synthase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 31 - 210 | 3.3e-56 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 274 - 505 | 1.7e-92 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 308 - 505 | 9.7e-56 | Terpene synthase family 2, C-terminal metal binding |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1520 |
| AccI | GTMKAC | 2 cut(s) | 683, 1083 |
| AccII | CGCG | 1 cut(s) | 588 |
| AciI | CCGC | 3 cut(s) | 586, 588, 1278 |
| AcsI | RAATTY | 3 cut(s) | 285, 449, 724 |
| AcuI | CTGAAG | 3 cut(s) | 48, 999, 1410 |
| AfaI | GTAC | 4 cut(s) | 398, 419, 497, 1208 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1320, 1399 |
| AflIII | ACRYGT | 2 cut(s) | 414, 613 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1387 |
| AleI | CACNNNNGTG | 1 cut(s) | 1591 |
| AluBI | AGCT | 8 cut(s) | 74, 225, 597, 991, 1004, 1105, 1529, 1645 |
| AluI | AGCT | 8 cut(s) | 74, 225, 597, 991, 1004, 1105, 1529, 1645 |
| Alw21I | GWGCWC | 2 cut(s) | 993, 1647 |
| Alw26I | GTCTC | 3 cut(s) | 13, 58, 1405 |
| AoxI | GGCC | 2 cut(s) | 490, 649 |
| ApeKI | GCWGC | 1 cut(s) | 1352 |
| ApoI | RAATTY | 3 cut(s) | 285, 449, 724 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 105, 1005, 1680 |
| AspS9I | GGNCC | 1 cut(s) | 649 |
| AsuHPI | GGTGA | 4 cut(s) | 110, 536, 547, 1127 |
| BanII | GRGCYC | 2 cut(s) | 993, 1647 |
| BbsI | GAAGAC | 2 cut(s) | 702, 806 |
| Bbv12I | GWGCWC | 2 cut(s) | 993, 1647 |
| BbvI | GCAGC | 1 cut(s) | 1339 |
| BccI | CCATC | 4 cut(s) | 437, 771, 1163, 1185 |
| BceAI | ACGGC | 1 cut(s) | 749 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 338, 372 |
| BciVI | GTATCC | 2 cut(s) | 265, 510 |
| BclI | TGATCA | 1 cut(s) | 816 |
| BcoDI | GTCTC | 3 cut(s) | 13, 58, 1405 |
| BfaI | CTAG | 4 cut(s) | 87, 488, 906, 986 |
| BfmI | CTRYAG | 1 cut(s) | 1461 |
| BfuI | GTATCC | 2 cut(s) | 265, 510 |
| BisI | GCNGC | 1 cut(s) | 1353 |
| BlsI | GCNGC | 1 cut(s) | 1354 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1387 |
| BmgT120I | GGNCC | 1 cut(s) | 649 |
| BmsI | GCATC | 5 cut(s) | 32, 174, 1364, 1495, 1609 |
| BpiI | GAAGAC | 2 cut(s) | 702, 806 |
| Bpu10I | CCTNAGC | 2 cut(s) | 35, 247 |
| BpuEI | CTTGAG | 3 cut(s) | 164, 590, 1631 |
| BsaAI | YACGTR | 1 cut(s) | 417 |
| BsaBI | GATNNNNATC | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 4 cut(s) | 123, 586, 656, 1314 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1320, 1399 |
| Bse1I | ACTGG | 1 cut(s) | 1559 |
| Bse3DI | GCAATG | 1 cut(s) | 1553 |
| Bse8I | GATNNNNATC | 1 cut(s) | 333 |
| BseDI | CCNNGG | 4 cut(s) | 123, 586, 656, 1314 |
| BseGI | GGATG | 3 cut(s) | 189, 1250, 1274 |
| BseJI | GATNNNNATC | 1 cut(s) | 333 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1320, 1399 |
| BseMI | GCAATG | 1 cut(s) | 1553 |
| BseMII | CTCAG | 1 cut(s) | 235 |
| BseNI | ACTGG | 1 cut(s) | 1559 |
| BseRI | GAGGAG | 1 cut(s) | 1655 |
| BseXI | GCAGC | 1 cut(s) | 1339 |
| BseYI | CCCAGC | 1 cut(s) | 1634 |
| Bsh1236I | CGCG | 1 cut(s) | 588 |
| BshFI | GGCC | 2 cut(s) | 492, 651 |
| BsiHKAI | GWGCWC | 2 cut(s) | 993, 1647 |
| BslFI | GGGAC | 3 cut(s) | 1031, 1305, 1375 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1320, 1399 |
| BsmAI | GTCTC | 3 cut(s) | 13, 58, 1405 |
| BsmFI | GGGAC | 3 cut(s) | 1031, 1305, 1375 |
| BsmI | GAATGC | 2 cut(s) | 1131, 1417 |
| BsnI | GGCC | 2 cut(s) | 492, 651 |
| Bsp1286I | GDGCHC | 2 cut(s) | 993, 1647 |
| Bsp143I | GATC | 3 cut(s) | 328, 816, 1033 |
| Bsp19I | CCATGG | 1 cut(s) | 123 |
| BspACI | CCGC | 3 cut(s) | 586, 588, 1278 |
| BspANI | GGCC | 2 cut(s) | 492, 651 |
| BspCNI | CTCAG | 1 cut(s) | 234 |
| BspFNI | CGCG | 1 cut(s) | 588 |
| BspQI | GCTCTTC | 1 cut(s) | 372 |
| BsrDI | GCAATG | 1 cut(s) | 1553 |
| BsrI | ACTGG | 1 cut(s) | 1559 |
| BssECI | CCNNGG | 4 cut(s) | 123, 586, 656, 1314 |
| BssMI | GATC | 3 cut(s) | 328, 816, 1033 |
| BssT1I | CCWWGG | 3 cut(s) | 123, 656, 1314 |
| Bst4CI | ACNGT | 1 cut(s) | 209 |
| Bst6I | CTCTTC | 2 cut(s) | 173, 372 |
| BstBAI | YACGTR | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 4 cut(s) | 653, 1107, 1111, 1531 |
| BstDEI | CTNAG | 4 cut(s) | 35, 221, 247, 383 |
| BstDSI | CCRYGG | 2 cut(s) | 123, 586 |
| BstEII | GGTNACC | 1 cut(s) | 937 |
| BstF5I | GGATG | 3 cut(s) | 189, 1250, 1274 |
| BstFNI | CGCG | 1 cut(s) | 588 |
| BstKTI | GATC | 3 cut(s) | 331, 819, 1036 |
| BstMAI | GTCTC | 3 cut(s) | 13, 58, 1405 |
| BstMBI | GATC | 3 cut(s) | 328, 816, 1033 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 29, 594, 911 |
| BstNSI | RCATGY | 1 cut(s) | 617 |
| BstPI | GGTNACC | 1 cut(s) | 937 |
| BstSFI | CTRYAG | 1 cut(s) | 1461 |
| BstUI | CGCG | 1 cut(s) | 588 |
| BstV1I | GCAGC | 1 cut(s) | 1339 |
| BstV2I | GAAGAC | 2 cut(s) | 702, 806 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 130, 1169 |
| BsuI | GTATCC | 2 cut(s) | 265, 510 |
| BsuRI | GGCC | 2 cut(s) | 492, 651 |
| BtgI | CCRYGG | 2 cut(s) | 123, 586 |
| BtsCI | GGATG | 3 cut(s) | 189, 1250, 1274 |
| BtsI | GCAGTG | 2 cut(s) | 48, 1437 |
| BtsIMutI | CAGTG | 3 cut(s) | 48, 1329, 1437 |
| Cac8I | GCNNGC | 4 cut(s) | 653, 1107, 1111, 1531 |
| Cfr13I | GGNCC | 1 cut(s) | 649 |
| Cfr42I | CCGCGG | 1 cut(s) | 589 |
| Csp6I | GTAC | 4 cut(s) | 397, 418, 496, 1207 |
| CviQI | GTAC | 4 cut(s) | 397, 418, 496, 1207 |
| DdeI | CTNAG | 4 cut(s) | 35, 221, 247, 383 |
| DpnI | GATC | 3 cut(s) | 330, 818, 1035 |
| DpnII | GATC | 3 cut(s) | 328, 816, 1033 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1387 |
| Eam1104I | CTCTTC | 2 cut(s) | 173, 372 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1387 |
| EarI | CTCTTC | 2 cut(s) | 173, 372 |
| Ecl136II | GAGCTC | 2 cut(s) | 991, 1645 |
| Eco130I | CCWWGG | 3 cut(s) | 123, 656, 1314 |
| Eco147I | AGGCCT | 1 cut(s) | 492 |
| Eco24I | GRGCYC | 2 cut(s) | 993, 1647 |
| Eco53kI | GAGCTC | 2 cut(s) | 991, 1645 |
| Eco57I | CTGAAG | 3 cut(s) | 48, 999, 1410 |
| Eco91I | GGTNACC | 1 cut(s) | 937 |
| EcoICRI | GAGCTC | 2 cut(s) | 991, 1645 |
| EcoO109I | RGGNCCY | 1 cut(s) | 649 |
| EcoO65I | GGTNACC | 1 cut(s) | 937 |
| EcoT14I | CCWWGG | 3 cut(s) | 123, 656, 1314 |
| EcoT22I | ATGCAT | 1 cut(s) | 1510 |
| EcoT38I | GRGCYC | 2 cut(s) | 993, 1647 |
| ErhI | CCWWGG | 3 cut(s) | 123, 656, 1314 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1089, 1121 |
| FaqI | GGGAC | 3 cut(s) | 1031, 1305, 1375 |
| FauNDI | CATATG | 1 cut(s) | 115 |
| FbaI | TGATCA | 1 cut(s) | 816 |
| FblI | GTMKAC | 2 cut(s) | 683, 1083 |
| Fnu4HI | GCNGC | 1 cut(s) | 1353 |
| FokI | GGATG | 3 cut(s) | 196, 1237, 1261 |
| FriOI | GRGCYC | 2 cut(s) | 993, 1647 |
| Fsp4HI | GCNGC | 1 cut(s) | 1353 |
| FspBI | CTAG | 4 cut(s) | 87, 488, 906, 986 |
| GluI | GCNGC | 1 cut(s) | 1353 |
| GsaI | CCCAGC | 1 cut(s) | 1638 |
| HaeIII | GGCC | 2 cut(s) | 492, 651 |
| HindIII | AAGCTT | 2 cut(s) | 1103, 1527 |
| HinfI | GANTC | 8 cut(s) | 458, 701, 876, 1148, 1216, 1310, 1371, 1548 |
| HphI | GGTGA | 4 cut(s) | 110, 536, 547, 1127 |
| Hpy166II | GTNNAC | 5 cut(s) | 212, 684, 1084, 1209, 1348 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 349, 516, 1011 |
| Hpy188III | TCNNGA | 6 cut(s) | 143, 569, 721, 814, 820, 1220 |
| Hpy8I | GTNNAC | 5 cut(s) | 212, 684, 1084, 1209, 1348 |
| HpyAV | CCTTC | 4 cut(s) | 160, 427, 640, 1507 |
| HpyCH4III | ACNGT | 1 cut(s) | 209 |
| HpyCH4IV | ACGT | 2 cut(s) | 416, 1588 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 29, 594, 911 |
| HpyF3I | CTNAG | 4 cut(s) | 35, 221, 247, 383 |
| HpySE526I | ACGT | 2 cut(s) | 416, 1588 |
| Ksp22I | TGATCA | 1 cut(s) | 816 |
| KspI | CCGCGG | 1 cut(s) | 589 |
| Kzo9I | GATC | 3 cut(s) | 328, 816, 1033 |
| LguI | GCTCTTC | 1 cut(s) | 372 |
| LmnI | GCTCC | 2 cut(s) | 602, 1642 |
| Lsp1109I | GCAGC | 1 cut(s) | 1339 |
| LweI | GCATC | 5 cut(s) | 32, 174, 1364, 1495, 1609 |
| MaeI | CTAG | 4 cut(s) | 87, 488, 906, 986 |
| MaeII | ACGT | 2 cut(s) | 416, 1588 |
| MaeIII | GTNAC | 8 cut(s) | 410, 524, 616, 937, 1172, 1194, 1323, 1657 |
| MalI | GATC | 3 cut(s) | 330, 818, 1035 |
| MboI | GATC | 3 cut(s) | 328, 816, 1033 |
| MfeI | CAATTG | 2 cut(s) | 161, 1037 |
| MhlI | GDGCHC | 2 cut(s) | 993, 1647 |
| MlyI | GAGTC | 3 cut(s) | 1210, 1304, 1365 |
| MmeI | TCCRAC | 2 cut(s) | 372, 1380 |
| MnlI | CCTC | 9 cut(s) | 174, 535, 648, 663, 1005, 1108, 1544, 1584, 1633 |
| Mph1103I | ATGCAT | 1 cut(s) | 1510 |
| MroXI | GAANNNNTTC | 3 cut(s) | 105, 1005, 1680 |
| MseI | TTAA | 7 cut(s) | 60, 81, 201, 593, 917, 996, 1376 |
| MslI | CAYNNNNRTG | 3 cut(s) | 128, 1167, 1591 |
| MspA1I | CMGCKG | 2 cut(s) | 588, 1280 |
| MunI | CAATTG | 2 cut(s) | 161, 1037 |
| Mva1269I | GAATGC | 2 cut(s) | 1131, 1417 |
| MvnI | CGCG | 1 cut(s) | 588 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 29, 594, 911 |
| NcoI | CCATGG | 1 cut(s) | 123 |
| NdeI | CATATG | 1 cut(s) | 115 |
| NdeII | GATC | 3 cut(s) | 328, 816, 1033 |
| NmuCI | GTSAC | 3 cut(s) | 410, 524, 1657 |
| NsiI | ATGCAT | 1 cut(s) | 1510 |
| NspI | RCATGY | 1 cut(s) | 617 |
| OliI | CACNNNNGTG | 1 cut(s) | 1591 |
| PceI | AGGCCT | 1 cut(s) | 492 |
| PciI | ACATGT | 1 cut(s) | 613 |
| PciSI | GCTCTTC | 1 cut(s) | 372 |
| PctI | GAATGC | 2 cut(s) | 1131, 1417 |
| PdmI | GAANNNNTTC | 3 cut(s) | 105, 1005, 1680 |
| PfeI | GAWTC | 5 cut(s) | 458, 701, 876, 1148, 1548 |
| PkrI | GCNGC | 1 cut(s) | 1354 |
| PleI | GAGTC | 3 cut(s) | 1210, 1304, 1365 |
| PpsI | GAGTC | 3 cut(s) | 1210, 1304, 1365 |
| Ppu21I | YACGTR | 1 cut(s) | 417 |
| PscI | ACATGT | 1 cut(s) | 613 |
| PsiI | TTATAA | 1 cut(s) | 1520 |
| Psp124BI | GAGCTC | 2 cut(s) | 993, 1647 |
| PspEI | GGTNACC | 1 cut(s) | 937 |
| PspFI | CCCAGC | 1 cut(s) | 1634 |
| PspPI | GGNCC | 1 cut(s) | 649 |
| RsaI | GTAC | 4 cut(s) | 398, 419, 497, 1208 |
| RsaNI | GTAC | 4 cut(s) | 397, 418, 496, 1207 |
| RseI | CAYNNNNRTG | 3 cut(s) | 128, 1167, 1591 |
| SacI | GAGCTC | 2 cut(s) | 993, 1647 |
| SacII | CCGCGG | 1 cut(s) | 589 |
| SapI | GCTCTTC | 1 cut(s) | 372 |
| SaqAI | TTAA | 7 cut(s) | 60, 81, 201, 593, 917, 996, 1376 |
| SatI | GCNGC | 1 cut(s) | 1353 |
| Sau3AI | GATC | 3 cut(s) | 328, 816, 1033 |
| Sau96I | GGNCC | 1 cut(s) | 649 |
| SchI | GAGTC | 3 cut(s) | 1210, 1304, 1365 |
| SduI | GDGCHC | 2 cut(s) | 993, 1647 |
| SfaNI | GCATC | 5 cut(s) | 32, 174, 1364, 1495, 1609 |
| SfcI | CTRYAG | 1 cut(s) | 1461 |
| Sfr303I | CCGCGG | 1 cut(s) | 589 |
| SgrBI | CCGCGG | 1 cut(s) | 589 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 128, 1167, 1591 |
| SmlI | CTYRAG | 3 cut(s) | 143, 569, 1646 |
| SmoI | CTYRAG | 3 cut(s) | 143, 569, 1646 |
| SseBI | AGGCCT | 1 cut(s) | 492 |
| SsiI | CCGC | 3 cut(s) | 586, 588, 1278 |
| SspI | AATATT | 3 cut(s) | 104, 300, 896 |
| SspMI | CTAG | 4 cut(s) | 87, 488, 906, 986 |
| SstI | GAGCTC | 2 cut(s) | 993, 1647 |
| StuI | AGGCCT | 1 cut(s) | 492 |
| StyI | CCWWGG | 3 cut(s) | 123, 656, 1314 |
| TaaI | ACNGT | 1 cut(s) | 209 |
| TaiI | ACGT | 2 cut(s) | 419, 1591 |
| TaqI | TCGA | 4 cut(s) | 376, 1167, 1202, 1674 |
| TatI | WGTACW | 1 cut(s) | 1206 |
| TfiI | GAWTC | 5 cut(s) | 458, 701, 876, 1148, 1548 |
| Tru1I | TTAA | 7 cut(s) | 60, 81, 201, 593, 917, 996, 1376 |
| Tru9I | TTAA | 7 cut(s) | 60, 81, 201, 593, 917, 996, 1376 |
| TscAI | CASTG | 3 cut(s) | 55, 1336, 1437 |
| TseFI | GTSAC | 3 cut(s) | 410, 524, 1657 |
| TseI | GCWGC | 1 cut(s) | 1352 |
| Tsp45I | GTSAC | 3 cut(s) | 410, 524, 1657 |
| TspDTI | ATGAA | 9 cut(s) | 324, 396, 726, 1014, 1067, 1169, 1239, 1460, 1629 |
| TspRI | CASTG | 3 cut(s) | 55, 1336, 1437 |
| XapI | RAATTY | 3 cut(s) | 285, 449, 724 |
| XceI | RCATGY | 1 cut(s) | 617 |
| XmiI | GTMKAC | 2 cut(s) | 683, 1083 |
| XmnI | GAANNNNTTC | 3 cut(s) | 105, 1005, 1680 |
| XspI | CTAG | 4 cut(s) | 87, 488, 906, 986 |
| Zsp2I | ATGCAT | 1 cut(s) | 1510 |