RLG00000018206

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000053
Physical Location & Seq
Reverse (-)
26831800 .. 26862586
30787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018206

Sequence Viewer

Length: 1491 bp
ATGTCTGTCCAAACTAGTCCAGCAGATGAATCCCAATTCAATGCCAAGACAGAAGTTGTTCGGCGCACAGCAAATTTTAAACCTAGCGTTTGGGGAGATCGGTTTGCCAACTATGCCGAAGACATTATAACTCAAGCTCATATGCAAGAACAAGTCGAGGAGCTGAAACAAGTAGTGAGAAAGAAAGTATTCACTGATGATGCTGGTGATTTTATACATCAACTGAAGCTAATTGATGCAATCCAGCGCCTCGGTGTGGCTTACCATTTTGAAATTGAAACAGAACAAGCCCTGAAATGTATACATGCTAACTATCAAGATATTCATGATGATGATAGTGATCTGTACAATGTTGCTCTTCGTTTTCGACTACTCAGACAACATGGATATAGTGTTTCTTGCGATGCTAATGGTGACTTCAAGGAAAGCTTAGCTACTGATGTTTCTAGTATGCTAAGCTTCTATGAGGCAGCCCATTTAATGGTGCATGGAGAAAAATTACTAGAAGAGGCTCTCGTTTTTACCACCACTCATCTCGAGACTGCATCAATTTTAACCGGACCAAGACTGAAAGCACAAATAATTGAAGCCCTAGAGAGACCTCTACTAAAAACTATAGAGAGGTTAGCTGCTCGGCGTTACATGTCAATATACCAAGATGAAGCTTCACACAATGAAGAGTTACTGAAACTTGCAAAGTTAAATTTTAATGTTGTTCAATGTTTACACAAAAATGAACTCAATGACATTATAAGATGGTATAAGGAAGTAGACTTTGCAAGGAGAATGCCTTTTGCTCGAGATAGGCTCGTGGAGTTGTTCTTTTGGATAATGGGGATATATTTTGAACCCCAATACGTGTTCGGGAGAAACATTCTGACGAAGCTAATTGAGATAGTAACAGTAATGGACGATATGTATGATGCATTCGGTACATTCGAAGAACTAATGAAGAATCAAGCTCGGCTCTACTTTGCCGAGGCCAGATGGTTCCACGAAGGATACACCCCAAGAATGGATGAGTATATGTGTGCTGCGGCATCTTCTGTCGGTAACACCATGCTTTCAATGGTATCTTTGGTAGGCATGGGAGACATTATAACAAAAGAGACATTTGAGTGGTTGACTAATGATCCGAAAATTCTTAGAGCTTCGAATACCATATTTAGGCTTATGGATGACATTGCTGGGCACAAGTTTGAGAAAGAGAGAGGGCATGTTGCTTCTAGTATTGATTGCTACATGAATGAATATGGGGTCTCAGAGCAAGAGACAATTGATGTCTTTAACAATCGAATTGTGGATTCGTGGAAGGATATCCACGAAGAGTTTCTGAGGTCTACTGCTGTGCCAATGCCTATGCTTAATCGTGTTCTTAACCTAACTCGAGTGGTTGATCTCCTTTACAAAAGGGGAGATGCCTCCACGCATGTTGGAAAACTGATGAAAGACACTATTGCTTCACTGTTTATTGATCCAGTGCCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

497

Amino Acids

57.36

Weight (kDa)

5.3

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 198 6.5e-47 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 255 - 317 1.3e-21 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 314 - 439 8.8e-36 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 316 - 439 3.1e-44 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 128, 752, 1100
AccB7I CCANNNNNTGG 1 cut(s) 481
AccI GTMKAC 3 cut(s) 301, 771, 1340
AciI CCGC 1 cut(s) 1037
AclWI GGATC 2 cut(s) 1127, 1469
AcsI RAATTY 3 cut(s) 73, 703, 1140
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 2 cut(s) 347, 934
AfiI CCNNNNNNNGG 4 cut(s) 256, 481, 1015, 1167
AflIII ACRYGT 2 cut(s) 642, 858
AgsI TTSAA 8 cut(s) 40, 272, 278, 421, 587, 719, 848, 1068
AhlI ACTAGT 1 cut(s) 14
Alw26I GTCTC 6 cut(s) 533, 592, 1086, 1103, 1264, 1265
AlwI GGATC 2 cut(s) 1127, 1469
Ama87I CYCGRG 3 cut(s) 536, 798, 1386
AoxI GGCC 1 cut(s) 981
ApeKI GCWGC 3 cut(s) 470, 629, 1034
ApoI RAATTY 3 cut(s) 73, 703, 1140
Asp700I GAANNNNTTC 3 cut(s) 57, 188, 1329
AspLEI GCGC 2 cut(s) 66, 249
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 218, 425
AsuII TTCGAA 2 cut(s) 939, 1154
AvaI CYCGRG 3 cut(s) 536, 798, 1386
AvaII GGWCC 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 1194
BauI CACGAG 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 3 cut(s) 482, 616, 1021
BccI CCATC 2 cut(s) 750, 981
BciVI GTATCC 1 cut(s) 995
BcoDI GTCTC 6 cut(s) 533, 592, 1086, 1103, 1264, 1265
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 6 cut(s) 15, 84, 447, 503, 593, 1227
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 250
BfuI GTATCC 1 cut(s) 995
BisI GCNGC 4 cut(s) 471, 630, 1035, 1038
BlpI GCTNAGC 2 cut(s) 430, 455
BlsI GCNGC 4 cut(s) 472, 631, 1036, 1039
Bme18I GGWCC 1 cut(s) 560
BmeT110I CYCGRG 3 cut(s) 536, 798, 1386
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 992
BmsI GCATC 7 cut(s) 190, 226, 394, 554, 913, 1049, 1408
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 792, 824
Bpu1102I GCTNAGC 2 cut(s) 430, 455
Bpu14I TTCGAA 2 cut(s) 939, 1154
BpuEI CTTGAG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 339
BsaI GGTCTC 2 cut(s) 592, 1264
BsaJI CCNNGG 2 cut(s) 250, 978
BsaWI WCCGGW 1 cut(s) 557
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 481, 1015, 1167
Bse1I ACTGG 1 cut(s) 1478
Bse3DI GCAATG 1 cut(s) 1182
Bse8I GATNNNNATC 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 250, 978
BseGI GGATG 2 cut(s) 1024, 1183
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 4 cut(s) 256, 481, 1015, 1167
BseMI GCAATG 1 cut(s) 1182
BseMII CTCAG 3 cut(s) 388, 1275, 1325
BseNI ACTGG 1 cut(s) 1478
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 1194
BseXI GCAGC 3 cut(s) 482, 616, 1021
BseYI CCCAGC 1 cut(s) 1187
BshFI GGCC 1 cut(s) 983
BsiHKCI CYCGRG 3 cut(s) 536, 798, 1386
BsiSI CCGG 1 cut(s) 558
BslI CCNNNNNNNGG 4 cut(s) 256, 481, 1015, 1167
BsmAI GTCTC 6 cut(s) 533, 592, 1086, 1103, 1264, 1265
BsmI GAATGC 2 cut(s) 792, 926
BsnI GGCC 1 cut(s) 983
Bso31I GGTCTC 2 cut(s) 592, 1264
BsoBI CYCGRG 3 cut(s) 536, 798, 1386
Bsp119I TTCGAA 2 cut(s) 939, 1154
Bsp1286I GDGCHC 1 cut(s) 1194
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 5 cut(s) 97, 340, 1132, 1396, 1474
Bsp1720I GCTNAGC 2 cut(s) 430, 455
BspACI CCGC 1 cut(s) 1037
BspANI GGCC 1 cut(s) 983
BspCNI CTCAG 3 cut(s) 387, 1274, 1326
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 992
BspPI GGATC 2 cut(s) 1127, 1469
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 2 cut(s) 939, 1154
BspTNI GGTCTC 2 cut(s) 592, 1264
BsrDI GCAATG 1 cut(s) 1182
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 1478
BssECI CCNNGG 2 cut(s) 250, 978
BssMI GATC 5 cut(s) 97, 340, 1132, 1396, 1474
BssNAI GTATAC 1 cut(s) 302
BssSI CACGAG 1 cut(s) 809
Bst1107I GTATAC 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 809
Bst4CI ACNGT 2 cut(s) 904, 1467
Bst6I CTCTTC 4 cut(s) 363, 501, 672, 1320
BstAUI TGTACA 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 859
BstBI TTCGAA 2 cut(s) 939, 1154
BstDEI CTNAG 6 cut(s) 374, 430, 455, 1145, 1261, 1334
BstF5I GGATG 2 cut(s) 1024, 1183
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 2 cut(s) 66, 249
BstKTI GATC 5 cut(s) 100, 343, 1135, 1399, 1477
BstMAI GTCTC 6 cut(s) 533, 592, 1086, 1103, 1264, 1265
BstMBI GATC 5 cut(s) 97, 340, 1132, 1396, 1474
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 4 cut(s) 308, 646, 1220, 1433
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 1194
BstV1I GCAGC 3 cut(s) 482, 616, 1021
BstV2I GAAGAC 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 302
BsuI GTATCC 1 cut(s) 995
BsuRI GGCC 1 cut(s) 983
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 1024, 1183
BtsIMutI CAGTG 3 cut(s) 192, 1463, 1485
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 66, 249
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 346, 933
CspCI CAANNNNNGTGG 2 cut(s) 1414, 1449
CviQI GTAC 2 cut(s) 346, 933
DdeI CTNAG 6 cut(s) 374, 430, 455, 1145, 1261, 1334
DpnI GATC 5 cut(s) 99, 342, 1134, 1398, 1476
DpnII GATC 5 cut(s) 97, 340, 1132, 1396, 1474
DraI TTTAAA 1 cut(s) 79
Eam1104I CTCTTC 4 cut(s) 363, 501, 672, 1320
EarI CTCTTC 4 cut(s) 363, 501, 672, 1320
Eco31I GGTCTC 2 cut(s) 592, 1264
Eco32I GATATC 1 cut(s) 1318
Eco47I GGWCC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 3 cut(s) 536, 798, 1386
EcoRV GATATC 1 cut(s) 1318
EcoT22I ATGCAT 1 cut(s) 928
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FauNDI CATATG 1 cut(s) 141
FblI GTMKAC 3 cut(s) 301, 771, 1340
Fnu4HI GCNGC 4 cut(s) 471, 630, 1035, 1038
FokI GGATG 2 cut(s) 1031, 1190
Fsp4HI GCNGC 4 cut(s) 471, 630, 1035, 1038
FspBI CTAG 6 cut(s) 15, 84, 447, 503, 593, 1227
GlaI GCGC 2 cut(s) 65, 248
GluI GCNGC 4 cut(s) 471, 630, 1035, 1038
GsaI CCCAGC 1 cut(s) 1191
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 1 cut(s) 983
HapII CCGG 1 cut(s) 558
HhaI GCGC 2 cut(s) 66, 249
Hin6I GCGC 2 cut(s) 64, 247
HinP1I GCGC 2 cut(s) 64, 247
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HindIII AAGCTT 3 cut(s) 427, 457, 663
HinfI GANTC 3 cut(s) 29, 955, 1304
HpaII CCGG 1 cut(s) 558
HphI GGTGA 2 cut(s) 218, 425
Hpy166II GTNNAC 5 cut(s) 302, 725, 772, 1125, 1341
Hpy188I TCNGA 6 cut(s) 377, 879, 1137, 1264, 1335, 1490
Hpy188III TCNNGA 6 cut(s) 317, 326, 536, 538, 800, 865
Hpy8I GTNNAC 5 cut(s) 302, 725, 772, 1125, 1341
HpyAV CCTTC 2 cut(s) 992, 1306
HpyCH4III ACNGT 2 cut(s) 904, 1467
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 7 cut(s) 145, 239, 487, 545, 695, 779, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 6 cut(s) 374, 430, 455, 1145, 1261, 1334
HpySE526I ACGT 1 cut(s) 858
HspAI GCGC 2 cut(s) 64, 247
Kzo9I GATC 5 cut(s) 97, 340, 1132, 1396, 1474
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 33, 189, 257, 305, 571, 997, 1173
Lsp1109I GCAGC 3 cut(s) 482, 616, 1021
LweI GCATC 7 cut(s) 190, 226, 394, 554, 913, 1049, 1408
MaeI CTAG 6 cut(s) 15, 84, 447, 503, 593, 1227
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 5 cut(s) 413, 638, 681, 898, 1052
MalI GATC 5 cut(s) 99, 342, 1134, 1398, 1476
MboI GATC 5 cut(s) 97, 340, 1132, 1396, 1474
MboII GAAGA 8 cut(s) 131, 350, 518, 689, 953, 964, 1035, 1337
MfeI CAATTG 1 cut(s) 1275
MhlI GDGCHC 1 cut(s) 1194
MmeI TCCRAC 1 cut(s) 1414
Mph1103I ATGCAT 1 cut(s) 928
MroXI GAANNNNTTC 3 cut(s) 57, 188, 1329
MseI TTAA 8 cut(s) 78, 479, 554, 701, 708, 1287, 1365, 1377
MslI CAYNNNNRTG 3 cut(s) 330, 732, 1117
MspI CCGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 1275
Mva1269I GAATGC 2 cut(s) 792, 926
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeI CATATG 1 cut(s) 141
NdeII GATC 5 cut(s) 97, 340, 1132, 1396, 1474
NlaIV GGNNCC 1 cut(s) 992
NmeAIII GCCGAG 3 cut(s) 613, 943, 1003
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 4 cut(s) 308, 646, 1220, 1433
NspV TTCGAA 2 cut(s) 939, 1154
PaeR7I CTCGAG 3 cut(s) 536, 798, 1386
PagI TCATGA 1 cut(s) 325
PciI ACATGT 1 cut(s) 642
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 2 cut(s) 792, 926
PdmI GAANNNNTTC 3 cut(s) 57, 188, 1329
PfeI GAWTC 3 cut(s) 29, 955, 1304
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 4 cut(s) 472, 631, 1036, 1039
Ppu21I YACGTR 1 cut(s) 859
PscI ACATGT 1 cut(s) 642
PsiI TTATAA 3 cut(s) 128, 752, 1100
PspFI CCCAGC 1 cut(s) 1187
PspN4I GGNNCC 1 cut(s) 992
PspPI GGNCC 1 cut(s) 560
PspXI VCTCGAGB 1 cut(s) 1386
RsaI GTAC 2 cut(s) 347, 934
RsaNI GTAC 2 cut(s) 346, 933
RseI CAYNNNNRTG 3 cut(s) 330, 732, 1117
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 8 cut(s) 78, 479, 554, 701, 708, 1287, 1365, 1377
SatI GCNGC 4 cut(s) 471, 630, 1035, 1038
Sau3AI GATC 5 cut(s) 97, 340, 1132, 1396, 1474
Sau96I GGNCC 1 cut(s) 560
SduI GDGCHC 1 cut(s) 1194
SfaNI GCATC 7 cut(s) 190, 226, 394, 554, 913, 1049, 1408
SfcI CTRYAG 1 cut(s) 615
Sfr274I CTCGAG 3 cut(s) 536, 798, 1386
SfuI TTCGAA 2 cut(s) 939, 1154
SinI GGWCC 1 cut(s) 560
SlaI CTCGAG 3 cut(s) 536, 798, 1386
SmiMI CAYNNNNRTG 3 cut(s) 330, 732, 1117
SmlI CTYRAG 4 cut(s) 132, 536, 798, 1386
SmoI CTYRAG 4 cut(s) 132, 536, 798, 1386
SpeI ACTAGT 1 cut(s) 14
SsiI CCGC 1 cut(s) 1037
SspMI CTAG 6 cut(s) 15, 84, 447, 503, 593, 1227
TaaI ACNGT 2 cut(s) 904, 1467
TaiI ACGT 1 cut(s) 861
TaqI TCGA 8 cut(s) 156, 367, 537, 799, 939, 1154, 1294, 1387
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 1040
TfiI GAWTC 3 cut(s) 29, 955, 1304
Tru1I TTAA 8 cut(s) 78, 479, 554, 701, 708, 1287, 1365, 1377
Tru9I TTAA 8 cut(s) 78, 479, 554, 701, 708, 1287, 1365, 1377
TscAI CASTG 3 cut(s) 199, 1470, 1485
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 3 cut(s) 470, 629, 1034
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 9 cut(s) 42, 314, 675, 690, 750, 965, 1259, 1263, 1460
TspRI CASTG 3 cut(s) 199, 1470, 1485
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 3 cut(s) 73, 703, 1140
XceI RCATGY 4 cut(s) 308, 646, 1220, 1433
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XhoI CTCGAG 3 cut(s) 536, 798, 1386
XmiI GTMKAC 3 cut(s) 301, 771, 1340
XmnI GAANNNNTTC 3 cut(s) 57, 188, 1329
XspI CTAG 6 cut(s) 15, 84, 447, 503, 593, 1227
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.