Rroxscaffold_4G00323790

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000053
Physical Location & Seq
Forward (+)
54875577 .. 54878357
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323790.1

Sequence Viewer

Length: 1797 bp
ATGTCTGTCCCTGATTTAGTGTCTGAGCTATCTCAAACCCCGAATATTACTGCCACTCCTGATGTTACTCGACATTCAGCTAATTTTTCCCCAAGCATTTGGGGTGATCATTTTCTGTCATATGCTTCCATCGAAGCGGCAGATAGTAAAAGTAAGAAACATGTCCAAGACTTGAAGGAAGAACTGAAGAGGATGATAATGGCTCCAGCGAAAAGGCCTTCACAAAAGTTGCACTTCGTCGACCACATTCAGCGCTTAGGTATCTCATACCATTTCGAAGATGAGATTGATCAAATTTTGCAGCAAGTTCACCTAGAAGAAGAATATGATGATCTTTGCACCACTGCTCTAAGCTTTCGATTGCTTAGACAACAAGGTTATAACGCTTCATGCAATATGTTTAACAAGTTCAAGGAAGATGATGGAAGATTTAAGGAATCGCTTATTGATGATGTACTTGGCCTGTTATGTTTGTATGAAGCCTCACATCTTCAGATGCCCGGGGAGGATATACTGAACGAGGCACTAACCTTCACCACCGCTCATCTCGAGTCTGCAGCACACCGCTTAAGCTCATCGTCTCTGCTTTGGAAACAAGTAACTCATGCCTTGTATCAGCCACTTTGGAAGGGCATGCCCAGGATTGAAGGGAGGCATCACTTGTCTATTTACCAAGAAGATGATTCACATAATGAAACTCTCCTGAATTTTGCAAAGATGGATTTCAACACTGTGCAGAAAGTTCATCAGAAAGAACTAAGTGAAATTACGAGGTGGTGGAAGGACTTGGACTTTGTAACCAAGCTCCCTTTTGCAAGAGACAAGGTAGTTGAGGCCTATTTTTGGGCTCTGGGAGTCTACTTTCAGCCTGAGTATTACTTTGCCAGGATGGTATTAGCCAAAGCTATTGCTATAATTACAGTCATTGACGACATATACGATGTACGTGGCACGTATGAAGAATTAGAGAGCTTTACTGAAGCTATTGAGAGGTGGGACATTTCTGCTGTTGATCAACTGCCAGATTATATGAAAGTGTGTTATAAAGCGCTGTTGAATTTCTTCACCGAGCTTGAAGAAAGTCTAACGAATAAGGGAATCTTATACCGCCTCCACTATGCGAGAGAAGGATTCAAAGTTCAAGTCAGAGCTTACTTCCAGGAAGCAAAATGGTTCAAACAAAAGTACACACCATCAATGGAAGAGTATATGTCTGTGGAACGCTATACATCCTTCTTCATGGTAGCAACAGTGTCATTTGCTGGAATGGGAGTTATTGTTACAAAAGACTCCATGGATTGGGTTTTCAGTGAACCTAAGCTTTTAAAGGCCACATCTATTATTGGCAGACTCATGAATGACCTTGTAGGCCATAAGTTTGAGCAAAAGAGAGAACACATTGCATCATCCGTGGAATGCTACATGAAGCAATATGGTGTCACAGAAGAAGAAGCAGAGGTCGAGCTAACTAAACAAGTGAATGACGCATGGAAAGACATAAACGAAGAGTGGCTCGATGCCACCTCTATCTCTAGGCCCCTACTCTTGCTGATTTTGAACTTTGCACGTTCTAGTGAAGTTCTATACAAGGGGGAAGATGTGTACACTCATTCTGGAAATGTGCTCAAGGGTCATGGTGATTTGGATACCTTTCACGCTCCTATTGGAAAGTATGGTGACGTTTCTGTGTCACTAGGAGGACCAGCAGCTTTTGGTGTAAAAGCTCCTGGCTTTTTCTTTCTCAGAGGATTTCGTCCTGGCTTTTCCTCTCTTTGGAGGGTTTCCTCTTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

598

Amino Acids

68.93

Weight (kDa)

5.5

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 204 1.5e-56 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 261 - 499 3.8e-96 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 301 - 499 2.1e-58 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 381, 1044
AccB7I CCANNNNNTGG 1 cut(s) 1299
AccBSI CCGCTC 1 cut(s) 542
AccI GTMKAC 2 cut(s) 240, 858
AciI CCGC 4 cut(s) 137, 540, 565, 1108
AcsI RAATTY 3 cut(s) 294, 706, 1057
AcuI CTGAAG 3 cut(s) 206, 476, 999
AfaI GTAC 4 cut(s) 456, 945, 1187, 1604
AfeI AGCGCT 2 cut(s) 254, 1050
AfiI CCNNNNNNNGG 3 cut(s) 843, 1299, 1773
AflII CTTAAG 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 160
AjnI CCWGG 5 cut(s) 638, 884, 1158, 1726, 1756
AloI GAACNNNNNNTCC 2 cut(s) 1122, 1154
Alw21I GWGCWC 1 cut(s) 1626
Alw26I GTCTC 2 cut(s) 585, 813
Ama87I CYCGRG 2 cut(s) 500, 548
Aor51HI AGCGCT 2 cut(s) 254, 1050
AoxI GGCC 6 cut(s) 215, 460, 834, 1329, 1369, 1535
ApeKI GCWGC 3 cut(s) 301, 557, 1706
ApoI RAATTY 3 cut(s) 294, 706, 1057
ArsI GACNNNNNNTTYG 4 cut(s) 776, 808, 1128, 1160
Asp700I GAANNNNTTC 1 cut(s) 1061
AspLEI GCGC 2 cut(s) 255, 1051
AspS9I GGNCC 2 cut(s) 1536, 1700
AsuC2I CCSGG 2 cut(s) 501, 502
AsuHPI GGTGA 6 cut(s) 116, 302, 526, 1057, 1649, 1688
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 2 cut(s) 500, 548
AvaII GGWCC 1 cut(s) 1700
BanII GRGCYC 1 cut(s) 850
Bbv12I GWGCWC 1 cut(s) 1626
BbvI GCAGC 3 cut(s) 313, 569, 1718
BccI CCATC 5 cut(s) 137, 416, 712, 883, 1201
BciT130I CCWGG 5 cut(s) 640, 886, 1160, 1728, 1758
BciVI GTATCC 1 cut(s) 1639
BclI TGATCA 3 cut(s) 106, 289, 1012
BcnI CCSGG 2 cut(s) 501, 502
BcoDI GTCTC 2 cut(s) 585, 813
BfaI CTAG 4 cut(s) 314, 1533, 1572, 1694
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 2 cut(s) 256, 1052
BfrI CTTAAG 1 cut(s) 568
BfuI GTATCC 1 cut(s) 1639
BisI GCNGC 4 cut(s) 138, 302, 558, 1707
BlsI GCNGC 4 cut(s) 139, 303, 559, 1708
Bme1390I CCNGG 7 cut(s) 501, 502, 640, 886, 1160, 1728, 1758
Bme18I GGWCC 1 cut(s) 1700
BmeT110I CYCGRG 2 cut(s) 500, 548
BmgT120I GGNCC 2 cut(s) 1536, 1700
BmiI GGNNCC 2 cut(s) 204, 1538
BmrFI CCNGG 7 cut(s) 501, 502, 640, 886, 1160, 1728, 1758
BmsI GCATC 4 cut(s) 486, 664, 1412, 1507
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 2 cut(s) 256, 1317
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 1610
BpuMI CCSGG 2 cut(s) 501, 502
BsaAI YACGTR 2 cut(s) 947, 954
BsaJI CCNNGG 5 cut(s) 500, 501, 638, 1293, 1410
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 1263, 1293
Bsc4I CCNNNNNNNGG 3 cut(s) 843, 1299, 1773
Bse3DI GCAATG 1 cut(s) 1398
BseBI CCWGG 5 cut(s) 640, 886, 1160, 1728, 1758
BseDI CCNNGG 5 cut(s) 500, 501, 638, 1293, 1410
BseGI GGATG 4 cut(s) 198, 894, 1229, 1406
BseLI CCNNNNNNNGG 3 cut(s) 843, 1299, 1773
BseMI GCAATG 1 cut(s) 1398
BseMII CTCAG 3 cut(s) 15, 861, 1756
BseXI GCAGC 3 cut(s) 313, 569, 1718
BsgI GTGCAG 1 cut(s) 755
BshFI GGCC 6 cut(s) 217, 462, 836, 1331, 1371, 1537
BsiHKAI GWGCWC 1 cut(s) 1626
BsiHKCI CYCGRG 2 cut(s) 500, 548
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 3 cut(s) 843, 1299, 1773
BsmAI GTCTC 2 cut(s) 585, 813
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 1010
BsmI GAATGC 1 cut(s) 1421
BsnI GGCC 6 cut(s) 217, 462, 836, 1331, 1371, 1537
BsoBI CYCGRG 2 cut(s) 500, 548
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 850, 1626
Bsp1407I TGTACA 1 cut(s) 1602
Bsp143I GATC 4 cut(s) 106, 289, 331, 1012
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 4 cut(s) 137, 540, 565, 1108
BspANI GGCC 6 cut(s) 217, 462, 836, 1331, 1371, 1537
BspCNI CTCAG 3 cut(s) 16, 862, 1755
BspHI TCATGA 1 cut(s) 1353
BspLI GGNNCC 2 cut(s) 204, 1538
BspMAI CTGCAG 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 276
BspTI CTTAAG 1 cut(s) 568
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 1398
BsrGI TGTACA 1 cut(s) 1602
BssECI CCNNGG 5 cut(s) 500, 501, 638, 1293, 1410
BssMI GATC 4 cut(s) 106, 289, 331, 1012
BssT1I CCWWGG 1 cut(s) 1293
Bst2UI CCWGG 5 cut(s) 640, 886, 1160, 1728, 1758
Bst4CI ACNGT 3 cut(s) 733, 922, 1252
Bst6I CTCTTC 4 cut(s) 182, 1197, 1500, 1792
BstAFI CTTAAG 1 cut(s) 568
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 2 cut(s) 947, 954
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 8 cut(s) 24, 256, 350, 365, 758, 870, 1317, 1742
BstDSI CCRYGG 2 cut(s) 1293, 1410
BstF5I GGATG 4 cut(s) 198, 894, 1229, 1406
BstH2I RGCGCY 2 cut(s) 256, 1052
BstHHI GCGC 2 cut(s) 255, 1051
BstKTI GATC 4 cut(s) 109, 292, 334, 1015
BstMAI GTCTC 2 cut(s) 585, 813
BstMBI GATC 4 cut(s) 106, 289, 331, 1012
BstNI CCWGG 5 cut(s) 640, 886, 1160, 1728, 1758
BstNSI RCATGY 2 cut(s) 164, 637
BstSCI CCNGG 7 cut(s) 499, 500, 638, 884, 1158, 1726, 1756
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 3 cut(s) 313, 569, 1718
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 1639
BsuRI GGCC 6 cut(s) 217, 462, 836, 1331, 1371, 1537
BtgI CCRYGG 2 cut(s) 1293, 1410
BtsCI GGATG 4 cut(s) 198, 894, 1229, 1406
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 4 cut(s) 342, 729, 1257, 1315
Cac8I GCNNGC 1 cut(s) 635
CciI TCATGA 1 cut(s) 1353
CfoI GCGC 2 cut(s) 255, 1051
Cfr13I GGNCC 2 cut(s) 1536, 1700
Cfr9I CCCGGG 1 cut(s) 500
CseI GACGC 1 cut(s) 1493
Csp6I GTAC 4 cut(s) 455, 944, 1186, 1603
CviQI GTAC 4 cut(s) 455, 944, 1186, 1603
DdeI CTNAG 8 cut(s) 24, 256, 350, 365, 758, 870, 1317, 1742
DpnI GATC 4 cut(s) 108, 291, 333, 1014
DpnII GATC 4 cut(s) 106, 289, 331, 1012
DraI TTTAAA 1 cut(s) 1326
Eam1104I CTCTTC 4 cut(s) 182, 1197, 1500, 1792
EarI CTCTTC 4 cut(s) 182, 1197, 1500, 1792
Eco130I CCWWGG 1 cut(s) 1293
Eco147I AGGCCT 2 cut(s) 217, 836
Eco24I GRGCYC 1 cut(s) 850
Eco47I GGWCC 1 cut(s) 1700
Eco47III AGCGCT 2 cut(s) 254, 1050
Eco57I CTGAAG 3 cut(s) 206, 476, 999
Eco88I CYCGRG 2 cut(s) 500, 548
EcoO109I RGGNCCY 1 cut(s) 1536
EcoRII CCWGG 5 cut(s) 638, 884, 1158, 1726, 1756
EcoT14I CCWWGG 1 cut(s) 1293
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 1293
Esp3I CGTCTC 1 cut(s) 585
FalI AAGNNNNNCTT 4 cut(s) 218, 250, 1085, 1117
FaqI GGGAC 1 cut(s) 1010
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 3 cut(s) 106, 289, 1012
FblI GTMKAC 2 cut(s) 240, 858
Fnu4HI GCNGC 4 cut(s) 138, 302, 558, 1707
FokI GGATG 4 cut(s) 205, 901, 1216, 1393
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 4 cut(s) 138, 302, 558, 1707
FspBI CTAG 4 cut(s) 314, 1533, 1572, 1694
GlaI GCGC 2 cut(s) 254, 1050
GluI GCNGC 4 cut(s) 138, 302, 558, 1707
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 2 cut(s) 256, 1052
HaeIII GGCC 6 cut(s) 217, 462, 836, 1331, 1371, 1537
HapII CCGG 1 cut(s) 501
HgaI GACGC 1 cut(s) 1493
HhaI GCGC 2 cut(s) 255, 1051
Hin6I GCGC 2 cut(s) 253, 1049
HinP1I GCGC 2 cut(s) 253, 1049
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 352, 1319
HinfI GANTC 8 cut(s) 437, 551, 683, 855, 1098, 1131, 1289, 1350
HpaII CCGG 1 cut(s) 501
HphI GGTGA 6 cut(s) 116, 302, 526, 1057, 1649, 1688
Hpy166II GTNNAC 7 cut(s) 241, 310, 859, 1188, 1313, 1603, 1605
Hpy188I TCNGA 5 cut(s) 25, 495, 750, 1148, 1745
Hpy188III TCNNGA 5 cut(s) 59, 548, 703, 1354, 1614
Hpy8I GTNNAC 7 cut(s) 241, 310, 859, 1188, 1313, 1603, 1605
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 8 cut(s) 169, 228, 541, 622, 641, 775, 1121, 1243
HpyCH4III ACNGT 3 cut(s) 733, 922, 1252
HpyCH4IV ACGT 4 cut(s) 946, 953, 1567, 1680
HpyF3I CTNAG 8 cut(s) 24, 256, 350, 365, 758, 870, 1317, 1742
HpySE526I ACGT 4 cut(s) 946, 953, 1567, 1680
HspAI GCGC 2 cut(s) 253, 1049
Ksp22I TGATCA 3 cut(s) 106, 289, 1012
Kzo9I GATC 4 cut(s) 106, 289, 331, 1012
LmnI GCTCC 4 cut(s) 208, 810, 1663, 1729
Lsp1109I GCAGC 3 cut(s) 313, 569, 1718
LweI GCATC 4 cut(s) 486, 664, 1412, 1507
MaeI CTAG 4 cut(s) 314, 1533, 1572, 1694
MaeII ACGT 4 cut(s) 946, 953, 1567, 1680
MaeIII GTNAC 7 cut(s) 64, 598, 796, 1279, 1438, 1676, 1689
MalI GATC 4 cut(s) 108, 291, 333, 1014
MbiI CCGCTC 1 cut(s) 542
MboI GATC 4 cut(s) 106, 289, 331, 1012
MhlI GDGCHC 2 cut(s) 850, 1626
MluCI AATT 7 cut(s) 82, 294, 706, 765, 915, 962, 1057
MlyI GAGTC 4 cut(s) 560, 864, 1283, 1344
MroXI GAANNNNTTC 1 cut(s) 1061
MseI TTAA 4 cut(s) 402, 432, 569, 1325
MspCI CTTAAG 1 cut(s) 568
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 7 cut(s) 501, 502, 640, 886, 1160, 1728, 1758
Mva1269I GAATGC 1 cut(s) 1421
MvaI CCWGG 5 cut(s) 640, 886, 1160, 1728, 1758
NciI CCSGG 2 cut(s) 501, 502
NcoI CCATGG 1 cut(s) 1293
NdeI CATATG 1 cut(s) 121
NdeII GATC 4 cut(s) 106, 289, 331, 1012
NlaIV GGNNCC 2 cut(s) 204, 1538
NmuCI GTSAC 3 cut(s) 1438, 1676, 1689
NspI RCATGY 2 cut(s) 164, 637
NspV TTCGAA 1 cut(s) 276
PaeI GCATGC 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 548
PagI TCATGA 1 cut(s) 1353
PceI AGGCCT 2 cut(s) 217, 836
PciI ACATGT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 1 cut(s) 1421
PdmI GAANNNNTTC 1 cut(s) 1061
PfeI GAWTC 4 cut(s) 437, 683, 1098, 1131
PflMI CCANNNNNTGG 1 cut(s) 1299
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 4 cut(s) 139, 303, 559, 1708
PleI GAGTC 4 cut(s) 559, 863, 1283, 1344
PpsI GAGTC 4 cut(s) 559, 863, 1283, 1344
Ppu21I YACGTR 2 cut(s) 947, 954
PscI ACATGT 1 cut(s) 160
PsiI TTATAA 2 cut(s) 381, 1044
Psp6I CCWGG 5 cut(s) 638, 884, 1158, 1726, 1756
PspGI CCWGG 5 cut(s) 638, 884, 1158, 1726, 1756
PspN4I GGNNCC 2 cut(s) 204, 1538
PspPI GGNCC 2 cut(s) 1536, 1700
PstI CTGCAG 1 cut(s) 559
RsaI GTAC 4 cut(s) 456, 945, 1187, 1604
RsaNI GTAC 4 cut(s) 455, 944, 1186, 1603
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 4 cut(s) 402, 432, 569, 1325
SatI GCNGC 4 cut(s) 138, 302, 558, 1707
Sau3AI GATC 4 cut(s) 106, 289, 331, 1012
Sau96I GGNCC 2 cut(s) 1536, 1700
SchI GAGTC 4 cut(s) 560, 864, 1283, 1344
ScrFI CCNGG 7 cut(s) 501, 502, 640, 886, 1160, 1728, 1758
SduI GDGCHC 2 cut(s) 850, 1626
SfaNI GCATC 4 cut(s) 486, 664, 1412, 1507
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 276
SinI GGWCC 1 cut(s) 1700
SlaI CTCGAG 1 cut(s) 548
SmaI CCCGGG 1 cut(s) 502
SmlI CTYRAG 3 cut(s) 548, 568, 1625
SmoI CTYRAG 3 cut(s) 548, 568, 1625
SphI GCATGC 1 cut(s) 637
Sse9I AATT 7 cut(s) 82, 294, 706, 765, 915, 962, 1057
SseBI AGGCCT 2 cut(s) 217, 836
SsiI CCGC 4 cut(s) 137, 540, 565, 1108
SspI AATATT 1 cut(s) 46
SspMI CTAG 4 cut(s) 314, 1533, 1572, 1694
StuI AGGCCT 2 cut(s) 217, 836
StyD4I CCNGG 7 cut(s) 499, 500, 638, 884, 1158, 1726, 1756
StyI CCWWGG 1 cut(s) 1293
TaaI ACNGT 3 cut(s) 733, 922, 1252
TaiI ACGT 4 cut(s) 949, 956, 1570, 1683
TaqI TCGA 8 cut(s) 70, 132, 240, 276, 358, 549, 1461, 1515
TasI AATT 7 cut(s) 82, 294, 706, 765, 915, 962, 1057
TatI WGTACW 3 cut(s) 454, 1185, 1602
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 4 cut(s) 437, 683, 1098, 1131
Tru1I TTAA 4 cut(s) 402, 432, 569, 1325
Tru9I TTAA 4 cut(s) 402, 432, 569, 1325
TscAI CASTG 4 cut(s) 349, 736, 1257, 1315
TseFI GTSAC 3 cut(s) 1438, 1676, 1689
TseI GCWGC 3 cut(s) 301, 557, 1706
Tsp45I GTSAC 3 cut(s) 1438, 1676, 1689
TspDTI ATGAA 9 cut(s) 378, 492, 708, 734, 972, 1046, 1228, 1370, 1439
TspGWI ACGGA 1 cut(s) 1399
TspMI CCCGGG 1 cut(s) 500
TspRI CASTG 4 cut(s) 349, 736, 1257, 1315
Van91I CCANNNNNTGG 1 cut(s) 1299
Vha464I CTTAAG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 1700
XapI RAATTY 3 cut(s) 294, 706, 1057
XceI RCATGY 2 cut(s) 164, 637
XhoI CTCGAG 1 cut(s) 548
XmaI CCCGGG 1 cut(s) 500
XmiI GTMKAC 2 cut(s) 240, 858
XmnI GAANNNNTTC 1 cut(s) 1061
XspI CTAG 4 cut(s) 314, 1533, 1572, 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.