Rmu_ssc0000410.1_g000031

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000410.1
OG0000053
Physical Location & Seq
Forward (+)
158682 .. 170311
11630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000410.1_g000031.1.cds

Sequence Viewer

Length: 2370 bp
atggggacgaacccgtgtatcaacgaaattgctctctggagagcactgaatcagaatgatcgagaggaggttcaccgcatcattgcatgcaaggggaatgggaggtcgctcgattcgcatattggtctgactcgtaattcacatctgaccccgcctgaagcccaggggaggagctgccaaacacccaaaccagacaaaagttttcatggttttgataaagtggatgcccaaccagctgtaaacctcatcccagatgccaaaataccattagccccctcttgtttcaccatgacggcaaaacatttacagttaacgtgcaaacgtcgctcctccggcatcgatcgagcagcgacggtggcgtttctgtcgcctgacggaaccatgccacgacatggagcagttcagaagcggcttgactcgtcgacgaagggttcgaagtcaagctcgatgggtttccatggtttctggcgagctcgcctcacaccgctgagtttccaatcactttcactttcgccttcgccgcttgatcaaggccattcgggatgtccagaggctctgctcggggcgcgacgaagcggcgagggttgccggaaggacgccaggggtcgggcggagcggtctgcagtcggtggagtcgccggcgatgtcgttggagggctgcccagaaaacctgtagttgctggtcgggtagctgcccagaacctgcaaccccgacctcctccgaccttgaacactgcccagaacagtccaaaatgcctccggcctccctcctgcaagccgccgccgcctcctggaatgcttccgctgcatcgccgtctgcactttagcgaaataactcgtgcccatatgcaacagcaaatcgaccgactgaaagtattagtgagggaaggttttacagttgcatctggtttatcccatcagctgaaattaattgatgatatccagcgcctaggagtgtcatcccattttgaaacagaaatagaagaatcactggaacatattcatgttcagttgcatgatgttgatctggacctatacaatgactctcttcgttttcgtctattaagacaaaatggatataatgtttcacctggagatatattcaacaaattcaaagatgcaaatggttacttcaaggagagcttaattgccgatgttctggggatgctaagcttgtatgaagcaacgcatcttagggttcatggagaagaaatactagaagaggctctggttttcaccaccaatcaccttaagttggcgataagccaggtaagctatccactaacagcacagatatctcaagccctagaaatacctttgcggagaggtctagagagactctctgccaggaattacatgtcaatctaccaagccacgacttcacgtaatgaagcattactgaaacttgcaaagttagatttcaatttggttcaatctttacacaaagaggagcttagtgaggttaccaggtggtggaaagaactagactttgaaaggaacatcccttttgtaaggcataggattgtggagagtttcttttggattgtgggattgtattttgaacctcaatactcggttgcgagaaagattgcaacaaaactgggtgctttggctacaagtttggatgatatctacgattcatttgctacatttgaagaactcaagatatttcgtgaagcaattgacaggtgggatgtcaactattgcatgaatggcctaccaccatacatgaaagtatattatcattcacttttgaatattatgaatgaaattgaggaagagctggaaaatcaaggaatgtcataccgactccattatgcaaaacaagttgatcaagccagagactatctcgttgaggccgaatggctccacgaaggatgtatcccaagcatggaggagtacatgcctgttagattaaggtctgttggtgcttgtttgactatagtcatatctttacttggaatgggcgatgctgttaccaaggaaacatttgagtgggttttgaagtaccctaaaattgtcaaggcttcgagcctcatttttaggctcatggatgacattgggggtagcaagtttccgaaacagaaaggggacgttgcttctagtattgattgccacatgaaacaatatagggtctcagatgaagagacaatcgatgcgtttaacaaacaaattgtagattcatggaaagaaataaatgaggattttcttcgaccaactgctatgccaatgtctgtgctcatgcgtgttcttaatttcacaagagttgttgatctgatttacaaggaagaagatggctttacacatgttgggaaagtagtaaaacatggtgtcgctgcactttttgttgatccattgccactcgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

789

Amino Acids

88.95

Weight (kDa)

7.64

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 711
AccB7I CCANNNNNTGG 2 cut(s) 392, 1473
AccBSI CCGCTC 1 cut(s) 616
AccI GTMKAC 1 cut(s) 422
AccII CGCG 1 cut(s) 568
AclWI GGATC 1 cut(s) 2345
AcsI RAATTY 1 cut(s) 1109
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 2 cut(s) 1901, 2009
AfiI CCNNNNNNNGG 7 cut(s) 168, 392, 606, 791, 1255, 1473, 1891
AflII CTTAAG 1 cut(s) 1250
AflIII ACRYGT 2 cut(s) 1356, 2305
AjnI CCWGG 7 cut(s) 162, 599, 790, 1090, 1266, 1346, 1466
Alw21I GWGCWC 3 cut(s) 46, 475, 2241
Alw26I GTCTC 4 cut(s) 1330, 1836, 2140, 2141
AlwI GGATC 1 cut(s) 2345
AlwNI CAGNNNCTG 1 cut(s) 703
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 4 cut(s) 532, 761, 1714, 1857
ApeKI GCWGC 6 cut(s) 174, 347, 658, 692, 805, 2336
ApoI RAATTY 1 cut(s) 1109
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AseI ATTAAT 1 cut(s) 929
Asp700I GAANNNNTTC 1 cut(s) 999
AspA2I CCTAGG 1 cut(s) 949
AspLEI GCGC 2 cut(s) 568, 948
AspS9I GGNCC 1 cut(s) 1030
AsuHPI GGTGA 5 cut(s) 65, 277, 1080, 1228, 1238
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 1030
AvrII CCTAGG 1 cut(s) 949
BaeGI GKGCMC 1 cut(s) 844
BaeI ACNNNNGTAYC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 475
BauI CACGAG 1 cut(s) 837
Bbv12I GWGCWC 3 cut(s) 46, 475, 2241
BbvI GCAGC 6 cut(s) 161, 359, 645, 679, 792, 2323
BccI CCATC 3 cut(s) 442, 924, 2288
BceAI ACGGC 2 cut(s) 309, 798
BcgI CGANNNNNNTGC 2 cut(s) 1625, 1659
BciT130I CCWGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
BciVI GTATCC 1 cut(s) 1892
BclI TGATCA 2 cut(s) 526, 1831
BcoDI GTCTC 4 cut(s) 1330, 1836, 2140, 2141
BfaI CTAG 6 cut(s) 950, 1217, 1307, 1331, 1484, 2103
BfmI CTRYAG 3 cut(s) 621, 672, 1941
BfoI RGCGCY 1 cut(s) 949
BfrI CTTAAG 1 cut(s) 1250
BfuAI ACCTGC 1 cut(s) 711
BfuI GTATCC 1 cut(s) 1892
BlnI CCTAGG 1 cut(s) 949
BlpI GCTNAGC 1 cut(s) 1169
Bme1390I CCNGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
Bme18I GGWCC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 1030
BmiI GGNNCC 2 cut(s) 379, 1868
BmrFI CCNGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
BmrI ACTGGG 1 cut(s) 1610
BmuI ACTGGG 1 cut(s) 1610
BoxI GACNNNNGTC 1 cut(s) 1943
BplI GAGNNNNNCTC 6 cut(s) 462, 494, 1325, 1357, 1833, 1865
BpmI CTGGAG 2 cut(s) 58, 1113
Bpu1102I GCTNAGC 1 cut(s) 1169
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 2 cut(s) 1284, 1646
Bsa29I ATCGAT 2 cut(s) 339, 2154
BsaAI YACGTR 1 cut(s) 1385
BsaBI GATNNNNATC 1 cut(s) 1023
BsaHI GRCGYC 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 2140
BsaJI CCNNGG 6 cut(s) 162, 163, 457, 600, 949, 1980
Bsc4I CCNNNNNNNGG 7 cut(s) 168, 392, 606, 791, 1255, 1473, 1891
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 2 cut(s) 996, 1605
Bse3DI GCAATG 2 cut(s) 81, 2354
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
BseCI ATCGAT 2 cut(s) 339, 2154
BseDI CCNNGG 6 cut(s) 162, 163, 457, 600, 949, 1980
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 7 cut(s) 168, 392, 606, 791, 1255, 1473, 1891
BseMI GCAATG 2 cut(s) 81, 2354
BseMII CTCAG 2 cut(s) 479, 2151
BseNI ACTGG 2 cut(s) 996, 1605
BseRI GAGGAG 6 cut(s) 80, 184, 319, 708, 1463, 1910
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 6 cut(s) 161, 359, 645, 679, 792, 2323
BsgI GTGCAG 2 cut(s) 803, 2322
Bsh1236I CGCG 1 cut(s) 568
Bsh1285I CGRYCG 2 cut(s) 343, 865
BshFI GGCC 4 cut(s) 534, 763, 1716, 1859
BshVI ATCGAT 2 cut(s) 339, 2154
BsiEI CGRYCG 2 cut(s) 343, 865
BsiHKAI GWGCWC 3 cut(s) 46, 475, 2241
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 4 cut(s) 333, 589, 639, 760
BslFI GGGAC 2 cut(s) 19, 2105
BslI CCNNNNNNNGG 7 cut(s) 168, 392, 606, 791, 1255, 1473, 1891
BsmAI GTCTC 4 cut(s) 1330, 1836, 2140, 2141
BsmFI GGGAC 2 cut(s) 19, 2105
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 4 cut(s) 534, 763, 1716, 1859
Bso31I GGTCTC 1 cut(s) 2140
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 4 cut(s) 46, 475, 844, 2241
Bsp143I GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
Bsp1720I GCTNAGC 1 cut(s) 1169
Bsp19I CCATGG 1 cut(s) 457
BspANI GGCC 4 cut(s) 534, 763, 1716, 1859
BspCNI CTCAG 2 cut(s) 480, 2150
BspDI ATCGAT 2 cut(s) 339, 2154
BspFNI CGCG 1 cut(s) 568
BspLI GGNNCC 2 cut(s) 379, 1868
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 711
BspPI GGATC 1 cut(s) 2345
BspQI GCTCTTC 1 cut(s) 1773
BspT104I TTCGAA 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 1250
BspTNI GGTCTC 1 cut(s) 2140
BsrBI CCGCTC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 81, 2354
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 2 cut(s) 996, 1605
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 6 cut(s) 162, 163, 457, 600, 949, 1980
BssMI GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
BssNI GRCGYC 1 cut(s) 597
BssSI CACGAG 1 cut(s) 837
BssT1I CCWWGG 3 cut(s) 457, 949, 1980
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
Bst4CI ACNGT 4 cut(s) 309, 355, 746, 898
Bst6I CTCTTC 4 cut(s) 1053, 1215, 1773, 2139
BstACI GRCGYC 1 cut(s) 597
BstAFI CTTAAG 1 cut(s) 1250
BstBAI YACGTR 1 cut(s) 1385
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 88, 471, 475, 640, 776
BstDEI CTNAG 5 cut(s) 488, 1169, 1193, 1454, 2137
BstDSI CCRYGG 1 cut(s) 457
BstEII GGTNACC 1 cut(s) 1462
BstFNI CGCG 1 cut(s) 568
BstH2I RGCGCY 1 cut(s) 949
BstHHI GCGC 2 cut(s) 568, 948
BstKTI GATC 7 cut(s) 61, 343, 529, 1027, 1834, 2275, 2353
BstMAI GTCTC 4 cut(s) 1330, 1836, 2140, 2141
BstMBI GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
BstMCI CGRYCG 2 cut(s) 343, 865
BstNI CCWGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
BstNSI RCATGY 4 cut(s) 90, 1360, 1906, 2309
BstPAI GACNNNNGTC 1 cut(s) 1943
BstPI GGTNACC 1 cut(s) 1462
BstSCI CCNGG 7 cut(s) 162, 599, 790, 1090, 1266, 1346, 1466
BstSFI CTRYAG 3 cut(s) 621, 672, 1941
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 6 cut(s) 161, 359, 645, 679, 792, 2323
Bsu15I ATCGAT 2 cut(s) 339, 2154
BsuI GTATCC 1 cut(s) 1892
BsuRI GGCC 4 cut(s) 534, 763, 1716, 1859
BsuTUI ATCGAT 2 cut(s) 339, 2154
BtgI CCRYGG 1 cut(s) 457
BtgZI GCGATG 3 cut(s) 657, 794, 1983
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 3 cut(s) 44, 732, 989
BveI ACCTGC 1 cut(s) 711
Cac8I GCNNGC 5 cut(s) 88, 471, 475, 640, 776
CaiI CAGNNNCTG 1 cut(s) 703
CfoI GCGC 2 cut(s) 568, 948
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 1030
ClaI ATCGAT 2 cut(s) 339, 2154
CseI GACGC 1 cut(s) 605
CsiI ACCWGGT 1 cut(s) 1466
Csp6I GTAC 2 cut(s) 1900, 2008
CviQI GTAC 2 cut(s) 1900, 2008
DdeI CTNAG 5 cut(s) 488, 1169, 1193, 1454, 2137
DpnI GATC 7 cut(s) 60, 342, 528, 1026, 1833, 2274, 2352
DpnII GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
Eam1104I CTCTTC 4 cut(s) 1053, 1215, 1773, 2139
EarI CTCTTC 4 cut(s) 1053, 1215, 1773, 2139
EciI GGCGGA 1 cut(s) 626
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 3 cut(s) 457, 949, 1980
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 1 cut(s) 2140
Eco32I GATATC 3 cut(s) 940, 1296, 1630
Eco47I GGWCC 1 cut(s) 1030
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 560
Eco91I GGTNACC 1 cut(s) 1462
EcoICRI GAGCTC 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 1462
EcoRII CCWGG 7 cut(s) 162, 599, 790, 1090, 1266, 1346, 1466
EcoRV GATATC 3 cut(s) 940, 1296, 1630
EcoT14I CCWWGG 3 cut(s) 457, 949, 1980
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 3 cut(s) 457, 949, 1980
FalI AAGNNNNNCTT 4 cut(s) 1127, 1159, 1437, 1469
FaqI GGGAC 2 cut(s) 19, 2105
FauI CCCGC 1 cut(s) 159
FauNDI CATATG 1 cut(s) 846
FbaI TGATCA 2 cut(s) 526, 1831
FblI GTMKAC 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 475
FspBI CTAG 6 cut(s) 950, 1217, 1307, 1331, 1484, 2103
GlaI GCGC 2 cut(s) 567, 947
GsuI CTGGAG 2 cut(s) 58, 1113
HaeII RGCGCY 1 cut(s) 949
HaeIII GGCC 4 cut(s) 534, 763, 1716, 1859
HapII CCGG 4 cut(s) 333, 589, 639, 760
HgaI GACGC 1 cut(s) 605
HhaI GCGC 2 cut(s) 568, 948
Hin1I GRCGYC 1 cut(s) 597
Hin6I GCGC 2 cut(s) 566, 946
HinP1I GCGC 2 cut(s) 566, 946
HincII GTYRAC 3 cut(s) 312, 423, 1699
HindII GTYRAC 3 cut(s) 312, 423, 1699
HindIII AAGCTT 1 cut(s) 1171
HpaI GTTAAC 1 cut(s) 312
HpaII CCGG 4 cut(s) 333, 589, 639, 760
HphI GGTGA 5 cut(s) 65, 277, 1080, 1228, 1238
Hpy166II GTNNAC 5 cut(s) 73, 241, 312, 423, 1699
Hpy188I TCNGA 8 cut(s) 54, 129, 147, 405, 723, 2079, 2140, 2277
Hpy188III TCNNGA 8 cut(s) 37, 62, 540, 548, 1028, 1331, 1663, 1673
Hpy8I GTNNAC 5 cut(s) 73, 241, 312, 423, 1699
Hpy99I CGWCG 5 cut(s) 327, 355, 424, 427, 573
HpyAV CCTTC 5 cut(s) 421, 525, 586, 881, 1868
HpyCH4III ACNGT 4 cut(s) 309, 355, 746, 898
HpyCH4IV ACGT 4 cut(s) 314, 322, 1384, 2094
HpyF3I CTNAG 5 cut(s) 488, 1169, 1193, 1454, 2137
HpySE526I ACGT 4 cut(s) 314, 322, 1384, 2094
Hsp92I GRCGYC 1 cut(s) 597
HspAI GCGC 2 cut(s) 566, 946
KroI GCCGGC 1 cut(s) 638
KroNI GCCGGC 1 cut(s) 640
Ksp22I TGATCA 2 cut(s) 526, 1831
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
LguI GCTCTTC 1 cut(s) 1773
LmnI GCTCC 6 cut(s) 171, 332, 395, 613, 1450, 1872
Lsp1109I GCAGC 6 cut(s) 161, 359, 645, 679, 792, 2323
MabI ACCWGGT 1 cut(s) 1466
MaeI CTAG 6 cut(s) 950, 1217, 1307, 1331, 1484, 2103
MaeII ACGT 4 cut(s) 314, 322, 1384, 2094
MaeIII GTNAC 3 cut(s) 1127, 1462, 1975
MalI GATC 7 cut(s) 60, 342, 528, 1026, 1833, 2274, 2352
MbiI CCGCTC 1 cut(s) 616
MboI GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
MfeI CAATTG 1 cut(s) 1680
MhlI GDGCHC 4 cut(s) 46, 475, 844, 2241
MlyI GAGTC 6 cut(s) 124, 410, 642, 1037, 1332, 1803
MmeI TCCRAC 2 cut(s) 631, 746
MreI CGCCGGCG 1 cut(s) 638
MroNI GCCGGC 1 cut(s) 638
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 8 cut(s) 311, 929, 1064, 1145, 1251, 1916, 2163, 2253
MslI CAYNNNNRTG 3 cut(s) 1002, 1993, 2365
MspA1I CMGCKG 4 cut(s) 236, 487, 805, 922
MspCI CTTAAG 1 cut(s) 1250
MspI CCGG 4 cut(s) 333, 589, 639, 760
MspR9I CCNGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
MunI CAATTG 1 cut(s) 1680
Mva1269I GAATGC 1 cut(s) 801
MvaI CCWGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
MvnI CGCG 1 cut(s) 568
NaeI GCCGGC 1 cut(s) 640
NcoI CCATGG 1 cut(s) 457
NdeI CATATG 1 cut(s) 846
NdeII GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
NgoMIV GCCGGC 1 cut(s) 638
NlaIV GGNNCC 2 cut(s) 379, 1868
NspI RCATGY 4 cut(s) 90, 1360, 1906, 2309
NspV TTCGAA 1 cut(s) 434
PaeI GCATGC 1 cut(s) 90
PasI CCCWGGG 1 cut(s) 163
PciI ACATGT 2 cut(s) 1356, 2305
PciSI GCTCTTC 1 cut(s) 1773
PcsI WCGNNNNNNNCGW 2 cut(s) 431, 1857
PctI GAATGC 1 cut(s) 801
PdiI GCCGGC 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 5 cut(s) 49, 113, 986, 1637, 2180
PflMI CCANNNNNTGG 2 cut(s) 392, 1473
PfoI TCCNGGA 1 cut(s) 790
Ple19I CGATCG 1 cut(s) 343
PleI GAGTC 6 cut(s) 124, 410, 641, 1037, 1332, 1803
PpsI GAGTC 6 cut(s) 124, 410, 641, 1037, 1332, 1803
Ppu21I YACGTR 1 cut(s) 1385
PscI ACATGT 2 cut(s) 1356, 2305
PshAI GACNNNNGTC 1 cut(s) 1943
PshBI ATTAAT 1 cut(s) 929
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 7 cut(s) 162, 599, 790, 1090, 1266, 1346, 1466
PspEI GGTNACC 1 cut(s) 1462
PspGI CCWGG 7 cut(s) 162, 599, 790, 1090, 1266, 1346, 1466
PspN4I GGNNCC 2 cut(s) 379, 1868
PspPI GGNCC 1 cut(s) 1030
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 703
PvuI CGATCG 1 cut(s) 343
PvuII CAGCTG 2 cut(s) 236, 922
RsaI GTAC 2 cut(s) 1901, 2009
RsaNI GTAC 2 cut(s) 1900, 2008
RseI CAYNNNNRTG 3 cut(s) 1002, 1993, 2365
SacI GAGCTC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 1773
SaqAI TTAA 8 cut(s) 311, 929, 1064, 1145, 1251, 1916, 2163, 2253
Sau3AI GATC 7 cut(s) 58, 340, 526, 1024, 1831, 2272, 2350
Sau96I GGNCC 1 cut(s) 1030
SchI GAGTC 6 cut(s) 124, 410, 642, 1037, 1332, 1803
ScrFI CCNGG 7 cut(s) 164, 601, 792, 1092, 1268, 1348, 1468
SduI GDGCHC 4 cut(s) 46, 475, 844, 2241
SexAI ACCWGGT 1 cut(s) 1466
SfcI CTRYAG 3 cut(s) 621, 672, 1941
SfuI TTCGAA 1 cut(s) 434
SgrAI CRCCGGYG 1 cut(s) 638
SgrDI CGTCGACG 1 cut(s) 421
SinI GGWCC 1 cut(s) 1030
SmiMI CAYNNNNRTG 3 cut(s) 1002, 1993, 2365
SmlI CTYRAG 3 cut(s) 1250, 1299, 1661
SmoI CTYRAG 3 cut(s) 1250, 1299, 1661
SphI GCATGC 1 cut(s) 90
SspI AATATT 1 cut(s) 1759
SspMI CTAG 6 cut(s) 950, 1217, 1307, 1331, 1484, 2103
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 7 cut(s) 162, 599, 790, 1090, 1266, 1346, 1466
StyI CCWWGG 3 cut(s) 457, 949, 1980
TaaI ACNGT 4 cut(s) 309, 355, 746, 898
TaiI ACGT 4 cut(s) 317, 325, 1387, 2097
TaqII GACCGA 1 cut(s) 879
TatI WGTACW 1 cut(s) 1899
TauI GCSGC 6 cut(s) 412, 523, 579, 781, 784, 787
TfiI GAWTC 5 cut(s) 49, 113, 986, 1637, 2180
Tru1I TTAA 8 cut(s) 311, 929, 1064, 1145, 1251, 1916, 2163, 2253
Tru9I TTAA 8 cut(s) 311, 929, 1064, 1145, 1251, 1916, 2163, 2253
TscAI CASTG 3 cut(s) 51, 739, 996
TseI GCWGC 6 cut(s) 174, 347, 658, 692, 805, 2336
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 3 cut(s) 51, 739, 996
Van91I CCANNNNNTGG 2 cut(s) 392, 1473
Vha464I CTTAAG 1 cut(s) 1250
VpaK11BI GGWCC 1 cut(s) 1030
VspI ATTAAT 1 cut(s) 929
XapI RAATTY 1 cut(s) 1109
XbaI TCTAGA 1 cut(s) 1330
XceI RCATGY 4 cut(s) 90, 1360, 1906, 2309
XmaJI CCTAGG 1 cut(s) 949
XmiI GTMKAC 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 6 cut(s) 950, 1217, 1307, 1331, 1484, 2103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.