Prupe.4G194200_v2.0.a1

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000053
Physical Location & Seq
Forward (+)
11749088 .. 11752076
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G194200.1

Sequence Viewer

Length: 1797 bp
ATGTCGCCAAACTTCACCTCTAGCTTTGCGCTCTATCCTTCCCCTTGTCCAAGCTTGCCCTTATCACCCAGCCTTCAATGTTTCTATAAACCAAAAAGAAAACAATCCGTATCATCTATCCGAGCTGGTCCAGAAGTAAGTCATAATCAAATTGCCAAGCCTCAAATTGCTCGGCCCACGGCAAACTATCACCCAAACATTTGGGGAGATCGGTTCATCAACTATGAGTATTCCGATGACAATATAACTCATGCCCAGAAGCAGGTTGACGAACTGAAAGAAATAGTGAGGAGGGAAGTGTTCACAAATCTTAAAGCTGGAGGTGATGGTTTTGCACATCAGCTCAAGTTAATTGAAGCAATCCAGCGTCTTGGCGTGGCATACCATTTTGAAAGAGAGATCGAAGAAGCACTGGAACGCATACATGGTACAACCTATCATGACAATTATGATGGCGATCTGCACAGTGTCGCTCTTGGCTTTCGGCTACTAAGGCAGCATGGATATAATGTTTCAAGTGATATATTCAATCAGTTCAAAGATGCAAATGGTAACTTCAAGGAAAGCTTGACTGCCAATGTGTCAGGTATGCTAAGCTTGTATGAAGCAACACATCTAAGGGTGCATGGAGAAGATATACTAGAAGAGGCTCTTGTTTTCACCACCGCTCACCTTGAGTCCAAAATAACCCATGTAAGGTATTCACTGGCAGCACAAATAAGTCAAGCCTTGGAGAGACCTCTGCTAAAATGTCTAGAGAGGTTAGGTGCCAGGAATTACTTGTCAATCTACCAAGACGAAGCTTCACATAATGAAACTCTACTAAAACTTGCAAAGTTAGATTTCAATCTTGTTCAGTCTTTGCACAAAAAGGAGCTCAGTGAGATTACTAGGTGGTGGAAAGAAGTGGACTTTGAAAGGAAGCTGCCGTTTGGAAGAGACAGGATAGTGGAATTGTACTTTTGGGCAATGGCAGTATATTTTGAACCTCACTACTCTGCCGCAAGAATAATTGTAAGCAAAATCATTGCCGTGGGAACAGTGATGGATGATATATACGATGCATATGGTACCTTCGAAGAACTCGAGATCTTTACAGAAGCAATTAGGAGGTGGGATGTTAATTGCATGGATGAACTGCCAGACTATATGCAAATATATTATCAAACACTTTTGAATCTTTTCAATGAAGTTGAGGATGAGATGGTGAAGCAAGGCAATTCATACCGAATTTACCATGCAAAAGAAGCTGCGAAAGCTTCATGCCAAGCTTACTTTGCTGAGGCTAGATGGTTACACGAAGGATGCATCCCAAGCATGGAGGAGTATATGCATGTTGCAACAACTACTGTTGGTAACCACTTACTTGCAACCATGTCTTTACTTGGGATGGGAGATGTTGTAACGAAGGAGGTATTTGAGTGGTTGTTCAGTAACCCTAAAATTCTTAGAGCTTCCAATATCATGTTTAGGCTCATGGATGACATTGCTGGGTCCAAGTTTGAGAAAGAGAGAGGGCATGTTGCTTCTAGTATTGATTGCTACATGAAGCAATATGGGGTCTCAGAGGAAGAGACACTTGATGTTTTCAACAAACAAGTTGTGGATTTGTGGAAGGATATAAACGAGGAGCTCCTTATAAAGCCAACTGCTGTGCCAAGGCCTGTCCTCATGTGCGTTCTCAATTTAACAAGAGTTGTGGATCTGCTTTACAAAAGGGGAGATGACTTCACACATGTTGGAAAACTCATGAAAGATATTGTTACTTCCCTTTATATTGATCCTGTGCCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

599

Amino Acids

68.82

Weight (kDa)

5.63

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1640
Acc36I ACCTGC 1 cut(s) 253
Acc65I GGTACC 1 cut(s) 1070
AccB1I GGYRCC 2 cut(s) 767, 1070
AccBSI CCGCTC 1 cut(s) 668
AciI CCGC 2 cut(s) 666, 1002
AclWI GGATC 2 cut(s) 1710, 1775
AcsI RAATTY 2 cut(s) 1230, 1443
AfaI GTAC 3 cut(s) 430, 959, 1072
AfiI CCNNNNNNNGG 3 cut(s) 262, 696, 1318
AflIII ACRYGT 1 cut(s) 1735
AjnI CCWGG 1 cut(s) 770
Alw21I GWGCWC 2 cut(s) 879, 1635
Alw26I GTCTC 4 cut(s) 730, 933, 1567, 1568
AlwI GGATC 2 cut(s) 1710, 1775
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 2 cut(s) 173, 1661
ApeKI GCWGC 4 cut(s) 496, 710, 925, 1250
ApoI RAATTY 2 cut(s) 1230, 1443
Asp700I GAANNNNTTC 1 cut(s) 1181
Asp718I GGTACC 1 cut(s) 1070
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 128, 174, 1494
AsuHPI GGTGA 7 cut(s) 7, 57, 182, 335, 652, 662, 1219
AsuII TTCGAA 1 cut(s) 1077
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 128, 1494
BanI GGYRCC 2 cut(s) 767, 1070
BanII GRGCYC 2 cut(s) 879, 1635
Bbv12I GWGCWC 2 cut(s) 879, 1635
BbvCI CCTCAGC 1 cut(s) 1281
BbvI GCAGC 4 cut(s) 508, 722, 912, 1237
BccI CCATC 6 cut(s) 320, 446, 1039, 1198, 1284, 1384
BceAI ACGGC 3 cut(s) 195, 913, 1016
BciT130I CCWGG 1 cut(s) 772
BcoDI GTCTC 4 cut(s) 730, 933, 1567, 1568
BfaI CTAG 6 cut(s) 21, 641, 755, 891, 1287, 1530
BfuAI ACCTGC 1 cut(s) 253
BglII AGATCT 1 cut(s) 1089
BisI GCNGC 5 cut(s) 497, 711, 926, 1002, 1251
BlpI GCTNAGC 1 cut(s) 593
BlsI GCNGC 5 cut(s) 498, 712, 927, 1003, 1252
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 2 cut(s) 128, 1494
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 3 cut(s) 128, 174, 1494
BmiI GGNNCC 3 cut(s) 769, 1072, 1495
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 4 cut(s) 532, 1051, 1295, 1317
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 1281
Bpu1102I GCTNAGC 1 cut(s) 593
Bpu14I TTCGAA 1 cut(s) 1077
BpuEI CTTGAG 2 cut(s) 329, 695
BsaBI GATNNNNATC 2 cut(s) 456, 846
BsaI GGTCTC 2 cut(s) 730, 1567
BsaJI CCNNGG 4 cut(s) 177, 729, 1032, 1658
BsaXI ACNNNNNCTCC 2 cut(s) 1386, 1416
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 696, 1318
Bse1I ACTGG 2 cut(s) 417, 711
Bse3DI GCAATG 3 cut(s) 975, 1026, 1485
Bse8I GATNNNNATC 2 cut(s) 456, 846
BseBI CCWGG 1 cut(s) 772
BseDI CCNNGG 4 cut(s) 177, 729, 1032, 1658
BseGI GGATG 8 cut(s) 1054, 1123, 1138, 1204, 1308, 1310, 1395, 1486
BseJI GATNNNNATC 2 cut(s) 456, 846
BseLI CCNNNNNNNGG 3 cut(s) 262, 696, 1318
BseMI GCAATG 3 cut(s) 975, 1026, 1485
BseMII CTCAG 3 cut(s) 892, 1272, 1578
BseNI ACTGG 2 cut(s) 417, 711
BseRI GAGGAG 3 cut(s) 304, 1337, 1643
BseXI GCAGC 4 cut(s) 508, 722, 912, 1237
BseYI CCCAGC 2 cut(s) 68, 1490
BsgI GTGCAG 1 cut(s) 446
BshFI GGCC 2 cut(s) 175, 1663
BshNI GGYRCC 2 cut(s) 767, 1070
BsiHKAI GWGCWC 2 cut(s) 879, 1635
BsiHKCI CYCGRG 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 262, 696, 1318
BsmAI GTCTC 4 cut(s) 730, 933, 1567, 1568
BsnI GGCC 2 cut(s) 175, 1663
Bso31I GGTCTC 2 cut(s) 730, 1567
BsoBI CYCGRG 1 cut(s) 1085
Bsp119I TTCGAA 1 cut(s) 1077
Bsp1286I GDGCHC 2 cut(s) 879, 1635
Bsp143I GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
Bsp1720I GCTNAGC 1 cut(s) 593
BspACI CCGC 2 cut(s) 666, 1002
BspANI GGCC 2 cut(s) 175, 1663
BspCNI CTCAG 3 cut(s) 891, 1273, 1577
BspHI TCATGA 2 cut(s) 439, 1749
BspLI GGNNCC 3 cut(s) 769, 1072, 1495
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 2 cut(s) 1710, 1775
BspT104I TTCGAA 1 cut(s) 1077
BspT107I GGYRCC 2 cut(s) 767, 1070
BspTNI GGTCTC 2 cut(s) 730, 1567
BsrBI CCGCTC 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 975, 1026, 1485
BsrI ACTGG 2 cut(s) 417, 711
BssECI CCNNGG 4 cut(s) 177, 729, 1032, 1658
BssMI GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
BssT1I CCWWGG 2 cut(s) 729, 1658
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 3 cut(s) 467, 1042, 1351
Bst6I CTCTTC 3 cut(s) 639, 931, 1566
BstBI TTCGAA 1 cut(s) 1077
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 7 cut(s) 491, 593, 617, 878, 1281, 1448, 1564
BstDSI CCRYGG 2 cut(s) 177, 1032
BstEII GGTNACC 1 cut(s) 1355
BstF5I GGATG 8 cut(s) 1054, 1123, 1138, 1204, 1308, 1310, 1395, 1486
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 6 cut(s) 211, 402, 460, 1092, 1705, 1783
BstMAI GTCTC 4 cut(s) 730, 933, 1567, 1568
BstMBI GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
BstMWI GCNNNNNNNGC 5 cut(s) 493, 1247, 1256, 1277, 1314
BstNI CCWGG 1 cut(s) 772
BstNSI RCATGY 3 cut(s) 1337, 1523, 1739
BstPI GGTNACC 1 cut(s) 1355
BstSCI CCNGG 1 cut(s) 770
BstV1I GCAGC 4 cut(s) 508, 722, 912, 1237
BstX2I RGATCY 2 cut(s) 1089, 1702
BstXI CCANNNNNNTGG 2 cut(s) 201, 371
BstYI RGATCY 2 cut(s) 1089, 1702
BsuRI GGCC 2 cut(s) 175, 1663
BtgI CCRYGG 2 cut(s) 177, 1032
BtsCI GGATG 8 cut(s) 1054, 1123, 1138, 1204, 1308, 1310, 1395, 1486
BtsIMutI CAGTG 5 cut(s) 410, 472, 704, 886, 1047
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 56
CciI TCATGA 2 cut(s) 439, 1749
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 3 cut(s) 128, 174, 1494
CseI GACGC 1 cut(s) 356
Csp6I GTAC 3 cut(s) 429, 958, 1071
CspCI CAANNNNNGTGG 2 cut(s) 1680, 1715
CviQI GTAC 3 cut(s) 429, 958, 1071
DdeI CTNAG 7 cut(s) 491, 593, 617, 878, 1281, 1448, 1564
DpnI GATC 6 cut(s) 210, 401, 459, 1091, 1704, 1782
DpnII GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
Eam1104I CTCTTC 3 cut(s) 639, 931, 1566
EarI CTCTTC 3 cut(s) 639, 931, 1566
Ecl136II GAGCTC 2 cut(s) 877, 1633
Eco130I CCWWGG 2 cut(s) 729, 1658
Eco147I AGGCCT 1 cut(s) 1663
Eco24I GRGCYC 2 cut(s) 879, 1635
Eco31I GGTCTC 2 cut(s) 730, 1567
Eco47I GGWCC 2 cut(s) 128, 1494
Eco53kI GAGCTC 2 cut(s) 877, 1633
Eco88I CYCGRG 1 cut(s) 1085
Eco91I GGTNACC 1 cut(s) 1355
EcoICRI GAGCTC 2 cut(s) 877, 1633
EcoO65I GGTNACC 1 cut(s) 1355
EcoRII CCWGG 1 cut(s) 770
EcoT14I CCWWGG 2 cut(s) 729, 1658
EcoT22I ATGCAT 3 cut(s) 1066, 1310, 1335
EcoT38I GRGCYC 2 cut(s) 879, 1635
ErhI CCWWGG 2 cut(s) 729, 1658
FalI AAGNNNNNCTT 6 cut(s) 551, 583, 636, 668, 1563, 1595
FauNDI CATATG 1 cut(s) 1066
Fnu4HI GCNGC 5 cut(s) 497, 711, 926, 1002, 1251
FokI GGATG 8 cut(s) 1061, 1130, 1145, 1211, 1295, 1317, 1402, 1493
FriOI GRGCYC 2 cut(s) 879, 1635
Fsp4HI GCNGC 5 cut(s) 497, 711, 926, 1002, 1251
FspBI CTAG 6 cut(s) 21, 641, 755, 891, 1287, 1530
GlaI GCGC 1 cut(s) 30
GluI GCNGC 5 cut(s) 497, 711, 926, 1002, 1251
GsaI CCCAGC 2 cut(s) 72, 1494
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 2 cut(s) 175, 1663
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 6 cut(s) 52, 565, 595, 801, 1257, 1269
HinfI GANTC 2 cut(s) 677, 1177
HphI GGTGA 7 cut(s) 7, 57, 182, 335, 652, 662, 1219
Hpy166II GTNNAC 3 cut(s) 268, 303, 910
Hpy188I TCNGA 3 cut(s) 122, 235, 1567
Hpy188III TCNNGA 5 cut(s) 131, 440, 755, 1087, 1750
Hpy8I GTNNAC 3 cut(s) 268, 303, 910
HpyAV CCTTC 6 cut(s) 48, 83, 1084, 1295, 1402, 1609
HpyCH4III ACNGT 3 cut(s) 467, 1042, 1351
HpyF10VI GCNNNNNNNGC 5 cut(s) 493, 1247, 1256, 1277, 1314
HpyF3I CTNAG 7 cut(s) 491, 593, 617, 878, 1281, 1448, 1564
HspAI GCGC 1 cut(s) 29
KpnI GGTACC 1 cut(s) 1074
Kzo9I GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
LmnI GCTCC 3 cut(s) 874, 1630, 1638
Lsp1109I GCAGC 4 cut(s) 508, 722, 912, 1237
LweI GCATC 4 cut(s) 532, 1051, 1295, 1317
MaeI CTAG 6 cut(s) 21, 641, 755, 891, 1287, 1530
MaeIII GTNAC 6 cut(s) 551, 1293, 1355, 1402, 1433, 1762
MalI GATC 6 cut(s) 210, 401, 459, 1091, 1704, 1782
MbiI CCGCTC 1 cut(s) 668
MboI GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
MboII GAAGA 6 cut(s) 416, 644, 656, 948, 1091, 1583
MflI RGATCY 2 cut(s) 1089, 1702
MhlI GDGCHC 2 cut(s) 879, 1635
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 1720
Mph1103I ATGCAT 3 cut(s) 1066, 1310, 1335
MroXI GAANNNNTTC 1 cut(s) 1181
MseI TTAA 5 cut(s) 312, 350, 1122, 1688, 1795
MslI CAYNNNNRTG 1 cut(s) 1031
MspR9I CCNGG 1 cut(s) 772
MvaI CCWGG 1 cut(s) 772
MwoI GCNNNNNNNGC 5 cut(s) 493, 1247, 1256, 1277, 1314
NdeI CATATG 1 cut(s) 1066
NdeII GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
NlaIV GGNNCC 3 cut(s) 769, 1072, 1495
NmeAIII GCCGAG 1 cut(s) 151
NsiI ATGCAT 3 cut(s) 1066, 1310, 1335
NspI RCATGY 3 cut(s) 1337, 1523, 1739
NspV TTCGAA 1 cut(s) 1077
PaeR7I CTCGAG 1 cut(s) 1085
PagI TCATGA 2 cut(s) 439, 1749
PceI AGGCCT 1 cut(s) 1663
PciI ACATGT 1 cut(s) 1735
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PdmI GAANNNNTTC 1 cut(s) 1181
PfeI GAWTC 1 cut(s) 1177
PkrI GCNGC 5 cut(s) 498, 712, 927, 1003, 1252
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
PscI ACATGT 1 cut(s) 1735
PsiI TTATAA 1 cut(s) 1640
Psp124BI GAGCTC 2 cut(s) 879, 1635
Psp6I CCWGG 1 cut(s) 770
PspEI GGTNACC 1 cut(s) 1355
PspFI CCCAGC 2 cut(s) 68, 1490
PspGI CCWGG 1 cut(s) 770
PspN4I GGNNCC 3 cut(s) 769, 1072, 1495
PspPI GGNCC 3 cut(s) 128, 174, 1494
PsuI RGATCY 2 cut(s) 1089, 1702
RsaI GTAC 3 cut(s) 430, 959, 1072
RsaNI GTAC 3 cut(s) 429, 958, 1071
RseI CAYNNNNRTG 1 cut(s) 1031
SacI GAGCTC 2 cut(s) 879, 1635
SaqAI TTAA 5 cut(s) 312, 350, 1122, 1688, 1795
SatI GCNGC 5 cut(s) 497, 711, 926, 1002, 1251
Sau3AI GATC 6 cut(s) 208, 399, 457, 1089, 1702, 1780
Sau96I GGNCC 3 cut(s) 128, 174, 1494
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 1 cut(s) 772
SduI GDGCHC 2 cut(s) 879, 1635
SfaNI GCATC 4 cut(s) 532, 1051, 1295, 1317
Sfr274I CTCGAG 1 cut(s) 1085
SfuI TTCGAA 1 cut(s) 1077
SinI GGWCC 2 cut(s) 128, 1494
SlaI CTCGAG 1 cut(s) 1085
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 3 cut(s) 344, 674, 1085
SmoI CTYRAG 3 cut(s) 344, 674, 1085
SseBI AGGCCT 1 cut(s) 1663
SsiI CCGC 2 cut(s) 666, 1002
SspMI CTAG 6 cut(s) 21, 641, 755, 891, 1287, 1530
SstI GAGCTC 2 cut(s) 879, 1635
StuI AGGCCT 1 cut(s) 1663
StyD4I CCNGG 1 cut(s) 770
StyI CCWWGG 2 cut(s) 729, 1658
TaaI ACNGT 3 cut(s) 467, 1042, 1351
TaqI TCGA 3 cut(s) 402, 1077, 1086
TatI WGTACW 1 cut(s) 957
TauI GCSGC 1 cut(s) 1004
TfiI GAWTC 1 cut(s) 1177
Tru1I TTAA 5 cut(s) 312, 350, 1122, 1688, 1795
Tru9I TTAA 5 cut(s) 312, 350, 1122, 1688, 1795
TscAI CASTG 5 cut(s) 417, 472, 711, 886, 1047
TseI GCWGC 4 cut(s) 496, 710, 925, 1250
TspDTI ATGAA 9 cut(s) 205, 618, 828, 1149, 1203, 1212, 1251, 1562, 1766
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 5 cut(s) 417, 472, 711, 886, 1047
VpaK11BI GGWCC 2 cut(s) 128, 1494
XapI RAATTY 2 cut(s) 1230, 1443
XbaI TCTAGA 1 cut(s) 754
XceI RCATGY 3 cut(s) 1337, 1523, 1739
XhoI CTCGAG 1 cut(s) 1085
XmnI GAANNNNTTC 1 cut(s) 1181
XspI CTAG 6 cut(s) 21, 641, 755, 891, 1287, 1530
Zsp2I ATGCAT 3 cut(s) 1066, 1310, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.