MD07G1269200.v1.1

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000053
Physical Location & Seq
Reverse (-)
33680945 .. 33684054
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1269200.v1.1.491

Sequence Viewer

Length: 1665 bp
ATGTCTTCTGTCGATGTTCCACCATCTCAATCTTCAAACCGAAATGACACTTTTAGTGTTCATCGGCCTTCAGCCACTTTTTATACTAGTATTTGGGGTGATCATTTTCTGTCGTATGGTTTTATGGAAGTGGATGCTGAACTTGAACAACATGTACAAGAACTGAAGGAAGAAGTGAGAAGGATGCTAACGACATCAGTTGAAAATGTTTCACAAAAGCTGAATTTGATTGATGACGTTCAACGCTTAGGTGTGTCTTACTATTTTGGAAATGAGATTGAAGAAATTTTACAGAAAATTCACGAGAACTCTTATGATTTGGATGACCTGTACACTGCTGCTCTTTGTTTTCGATTGCTTAGACAACAAGGTTATAACATTACATGTGATCTATTCAACAAGTTCAAGGACGGTGATGGAAAATTCAAGGAATCACTCGTTGATGATGTTGTAGGACTATTAAGCCTGTATGAAGCTACACACCTTAGGATCCATGGAGAGGAGATACTAGATGAGGCACTAACCTTCACCACCACTCATCTTGAGTCGGCTACAAACCGTTTAAGCCCCCCACTTGCAAAAACAGTAACCCATGCCCTCAATCAACAGCTCCGAAAGGGTTTACCAAGGGTTGAAGCAAGGTATTACTTGTCCGTCTACCAGGAACTAAGAGAATCACCGAATGAAACTCTCCTAACGTTCGCCAAGTTGGATTTCAACCGACTGCAACGAGTCCATCAGAAAGAACTAAGCGAACTCACAAGGTGGTGGAAGGATTTGGACATACCAAACAAGCTACCTTTTGTGAGAGACAGATTGGTTGAGGTTTACTTCTGCTGGAGTCTGTCAGTTTACTTTCAGCCCCAATATTCCTTTGCTAGGAGGACATTATGCAAAGTTACTGCTATAACATCCATTATCGATGACGTTTATGATGAATATGGCACAAATGAGGAACTAGAGCTCTTTACTGAAGCTATTGAGAGGTGGGATGTCTCAGCGATGGATCAACTACCAGAGTATATGAAAGTCTGCTATCGGGCGTTGTTGGATATATACAGTGAAATTCATGAAAAGCTTGTGCACGAGGGGAAATTATATCACATCCACCATGCAATAGAAGCGATGAAAAAACAAGTTAGAGGCTACTTCGTTGAAGGCAAATTGTTCCGCCAGAAGCACATACCATCACTGGATGATTACATGTCTATATCACTCGTGACCAGTGGCTACCCGTTGCTAATAACCACATCCTTTGTTGGAATGGAAGAAGCTACAATAGACTCCTTTGATTGGTTGTTAAATTCCCCTCAAGCAGTGAAGGCTGCATCAACAGTTGCCAGACTCATGGATGACATAGCGGACCACAAGCTTGAGCAAGAGAATGAACATCTGGTCTCAGCTGTGACCTGTTACATGATGAAATATGGGGCCACAAAAGAAGAAGCGGTAATCGAACTTAGAAGGCAAGTGAACAAAGCATGGAAGGACATAAACGAAGCGTGCCTCCACCCTACCGCTGTCCCCATGCCACTGCTAATTCGTATTCTCAATTTTGCTCGGGTCATGGATGTTGTGTACAAGTGTGAAGATGGCTACACTATTGCTCAGGGTGGGCTAAAAGATTTTATAGTTTCCACACTAGTGGAACCTGTGGCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

555

Amino Acids

64.05

Weight (kDa)

5.2

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 31 - 200 3e-60 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 258 - 497 3.4e-90 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 299 - 497 1.7e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 375, 1663
AccI GTMKAC 1 cut(s) 657
AciI CCGC 4 cut(s) 1171, 1361, 1448, 1518
AclI AACGTT 1 cut(s) 698
AclWI GGATC 3 cut(s) 484, 497, 1014
AcsI RAATTY 6 cut(s) 223, 285, 297, 422, 1065, 1303
AcuI CTGAAG 3 cut(s) 54, 185, 993
AdeI CACNNNGTG 1 cut(s) 765
AfaI GTAC 3 cut(s) 156, 332, 1580
AfiI CCNNNNNNNGG 3 cut(s) 499, 879, 1293
AflIII ACRYGT 3 cut(s) 151, 383, 1203
AhlI ACTAGT 2 cut(s) 86, 1642
AjnI CCWGG 1 cut(s) 660
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AleI CACNNNNGTG 1 cut(s) 1643
Alw21I GWGCWC 2 cut(s) 966, 1086
Alw26I GTCTC 3 cut(s) 804, 1000, 1402
Alw44I GTGCAC 1 cut(s) 1082
AlwI GGATC 3 cut(s) 484, 497, 1014
Ama87I CYCGRG 1 cut(s) 1560
AoxI GGCC 2 cut(s) 65, 1431
ApaLI GTGCAC 1 cut(s) 1082
ApeKI GCWGC 2 cut(s) 338, 1325
ApoI RAATTY 6 cut(s) 223, 285, 297, 422, 1065, 1303
AspS9I GGNCC 2 cut(s) 1363, 1431
AsuHPI GGTGA 4 cut(s) 110, 425, 520, 669
AvaI CYCGRG 1 cut(s) 1560
AvaII GGWCC 1 cut(s) 1363
AxyI CCTNAGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 1086
BamHI GGATCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 966
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BauI CACGAG 3 cut(s) 302, 1085, 1217
Bbv12I GWGCWC 2 cut(s) 966, 1086
BbvI GCAGC 2 cut(s) 325, 1312
BccI CCATC 6 cut(s) 31, 410, 744, 997, 1195, 1586
BciT130I CCWGG 1 cut(s) 662
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 3 cut(s) 804, 1000, 1402
BcuI ACTAGT 2 cut(s) 86, 1642
BfaI CTAG 5 cut(s) 87, 509, 879, 959, 1643
BisI GCNGC 2 cut(s) 339, 1326
BlsI GCNGC 2 cut(s) 340, 1327
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 1 cut(s) 1363
BmeT110I CYCGRG 1 cut(s) 1560
BmgT120I GGNCC 2 cut(s) 1363, 1431
BmiI GGNNCC 3 cut(s) 491, 1432, 1650
BmrFI CCNGG 1 cut(s) 662
BmsI GCATC 3 cut(s) 124, 174, 1337
BpmI CTGGAG 1 cut(s) 859
Bpu10I CCTNAGC 2 cut(s) 247, 1608
BpuEI CTTGAG 3 cut(s) 563, 1296, 1394
Bsa29I ATCGAT 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 1402
BsaJI CCNNGG 2 cut(s) 493, 626
Bsc4I CCNNNNNNNGG 3 cut(s) 499, 879, 1293
Bse1I ACTGG 2 cut(s) 1197, 1224
Bse21I CCTNAGG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 662
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 2 cut(s) 493, 626
BseLI CCNNNNNNNGG 3 cut(s) 499, 879, 1293
BseMII CTCAG 3 cut(s) 1011, 1413, 1622
BseNI ACTGG 2 cut(s) 1197, 1224
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 1086
BseXI GCAGC 2 cut(s) 325, 1312
BshFI GGCC 2 cut(s) 67, 1433
BshVI ATCGAT 1 cut(s) 921
BsiHKAI GWGCWC 2 cut(s) 966, 1086
BsiHKCI CYCGRG 1 cut(s) 1560
BslFI GGGAC 1 cut(s) 1508
BslI CCNNNNNNNGG 3 cut(s) 499, 879, 1293
BsmAI GTCTC 3 cut(s) 804, 1000, 1402
BsmFI GGGAC 1 cut(s) 1508
BsnI GGCC 2 cut(s) 67, 1433
Bso31I GGTCTC 1 cut(s) 1402
BsoBI CYCGRG 1 cut(s) 1560
Bsp1286I GDGCHC 2 cut(s) 966, 1086
Bsp1407I TGTACA 3 cut(s) 154, 330, 1578
Bsp143I GATC 4 cut(s) 100, 388, 489, 1006
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 4 cut(s) 1171, 1361, 1448, 1518
BspANI GGCC 2 cut(s) 67, 1433
BspCNI CTCAG 3 cut(s) 1010, 1412, 1621
BspDI ATCGAT 1 cut(s) 921
BspHI TCATGA 1 cut(s) 1069
BspLI GGNNCC 3 cut(s) 491, 1432, 1650
BspPI GGATC 3 cut(s) 484, 497, 1014
BspTNI GGTCTC 1 cut(s) 1402
BsrGI TGTACA 3 cut(s) 154, 330, 1578
BsrI ACTGG 2 cut(s) 1197, 1224
BssECI CCNNGG 2 cut(s) 493, 626
BssMI GATC 4 cut(s) 100, 388, 489, 1006
BssSI CACGAG 3 cut(s) 302, 1085, 1217
BssT1I CCWWGG 2 cut(s) 493, 626
Bst2BI CACGAG 3 cut(s) 302, 1085, 1217
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 5 cut(s) 413, 560, 586, 1061, 1336
BstAUI TGTACA 3 cut(s) 154, 330, 1578
BstC8I GCNNGC 1 cut(s) 1504
BstDEI CTNAG 9 cut(s) 247, 359, 485, 668, 749, 997, 1399, 1460, 1608
BstDSI CCRYGG 1 cut(s) 493
BstENI CCTNNNNNAGG 1 cut(s) 877
BstKTI GATC 4 cut(s) 103, 391, 492, 1009
BstMAI GTCTC 3 cut(s) 804, 1000, 1402
BstMBI GATC 4 cut(s) 100, 388, 489, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 1121, 1322
BstNI CCWGG 1 cut(s) 662
BstNSI RCATGY 3 cut(s) 155, 387, 1207
BstSCI CCNGG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 1086
BstV1I GCAGC 2 cut(s) 325, 1312
BstX2I RGATCY 1 cut(s) 489
BstXI CCANNNNNNTGG 2 cut(s) 1348, 1645
BstYI RGATCY 1 cut(s) 489
Bsu15I ATCGAT 1 cut(s) 921
Bsu36I CCTNAGG 1 cut(s) 485
BsuRI GGCC 2 cut(s) 67, 1433
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 1 cut(s) 493
BtgZI GCGATG 2 cut(s) 1016, 1139
BtsI GCAGTG 3 cut(s) 333, 1323, 1532
BtsIMutI CAGTG 6 cut(s) 333, 1066, 1190, 1231, 1323, 1532
Cac8I GCNNGC 1 cut(s) 1504
CciI TCATGA 1 cut(s) 1069
Cfr13I GGNCC 2 cut(s) 1363, 1431
ClaI ATCGAT 1 cut(s) 921
Csp6I GTAC 3 cut(s) 155, 331, 1579
CspCI CAANNNNNGTGG 4 cut(s) 523, 558, 1237, 1272
CviQI GTAC 3 cut(s) 155, 331, 1579
DdeI CTNAG 9 cut(s) 247, 359, 485, 668, 749, 997, 1399, 1460, 1608
DpnI GATC 4 cut(s) 102, 390, 491, 1008
DpnII GATC 4 cut(s) 100, 388, 489, 1006
DraIII CACNNNGTG 1 cut(s) 765
EciI GGCGGA 1 cut(s) 1160
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 2 cut(s) 493, 626
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 1402
Eco47I GGWCC 1 cut(s) 1363
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 3 cut(s) 54, 185, 993
Eco81I CCTNAGG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 1560
EcoICRI GAGCTC 1 cut(s) 964
EcoNI CCTNNNNNAGG 1 cut(s) 877
EcoRII CCWGG 1 cut(s) 660
EcoT14I CCWWGG 2 cut(s) 493, 626
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 2 cut(s) 493, 626
FaqI GGGAC 1 cut(s) 1508
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 339, 1326
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 2 cut(s) 339, 1326
FspBI CTAG 5 cut(s) 87, 509, 879, 959, 1643
GluI GCNGC 2 cut(s) 339, 1326
GsuI CTGGAG 1 cut(s) 859
HaeIII GGCC 2 cut(s) 67, 1433
HindIII AAGCTT 2 cut(s) 1076, 1370
HinfI GANTC 7 cut(s) 431, 545, 674, 732, 841, 1283, 1344
HphI GGTGA 4 cut(s) 110, 425, 520, 669
Hpy166II GTNNAC 8 cut(s) 333, 623, 658, 829, 853, 1084, 1474, 1579
Hpy188I TCNGA 2 cut(s) 614, 741
Hpy188III TCNNGA 4 cut(s) 302, 542, 1070, 1219
Hpy8I GTNNAC 8 cut(s) 333, 623, 658, 829, 853, 1084, 1474, 1579
HpyAV CCTTC 9 cut(s) 78, 160, 174, 535, 766, 1151, 1315, 1458, 1480
HpyCH4III ACNGT 5 cut(s) 413, 560, 586, 1061, 1336
HpyCH4IV ACGT 3 cut(s) 237, 698, 927
HpyCH4V TGCA 6 cut(s) 578, 727, 894, 1084, 1115, 1328
HpyF10VI GCNNNNNNNGC 2 cut(s) 1121, 1322
HpyF3I CTNAG 9 cut(s) 247, 359, 485, 668, 749, 997, 1399, 1460, 1608
HpySE526I ACGT 3 cut(s) 237, 698, 927
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 100, 388, 489, 1006
LmnI GCTCC 1 cut(s) 615
Lsp1109I GCAGC 2 cut(s) 325, 1312
LweI GCATC 3 cut(s) 124, 174, 1337
MaeI CTAG 5 cut(s) 87, 509, 879, 959, 1643
MaeII ACGT 3 cut(s) 237, 698, 927
MaeIII GTNAC 5 cut(s) 586, 898, 1219, 1405, 1412
MalI GATC 4 cut(s) 102, 390, 491, 1008
MboI GATC 4 cut(s) 100, 388, 489, 1006
MboII GAAGA 6 cut(s) 24, 182, 293, 1280, 1454, 1601
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 966, 1086
MlyI GAGTC 5 cut(s) 554, 741, 850, 1277, 1338
MmeI TCCRAC 3 cut(s) 690, 1029, 1240
MseI TTAA 3 cut(s) 461, 563, 1301
MslI CAYNNNNRTG 1 cut(s) 1643
MspA1I CMGCKG 2 cut(s) 1403, 1520
MspR9I CCNGG 1 cut(s) 662
MvaI CCWGG 1 cut(s) 662
MwoI GCNNNNNNNGC 2 cut(s) 1121, 1322
NcoI CCATGG 1 cut(s) 493
NdeII GATC 4 cut(s) 100, 388, 489, 1006
NlaIV GGNNCC 3 cut(s) 491, 1432, 1650
NmuCI GTSAC 2 cut(s) 1219, 1405
NspI RCATGY 3 cut(s) 155, 387, 1207
OliI CACNNNNGTG 1 cut(s) 1643
PagI TCATGA 1 cut(s) 1069
PciI ACATGT 3 cut(s) 151, 383, 1203
PfeI GAWTC 2 cut(s) 431, 674
PkrI GCNGC 2 cut(s) 340, 1327
PleI GAGTC 5 cut(s) 553, 740, 849, 1277, 1338
PpsI GAGTC 5 cut(s) 553, 740, 849, 1277, 1338
PscI ACATGT 3 cut(s) 151, 383, 1203
PsiI TTATAA 2 cut(s) 375, 1663
Psp124BI GAGCTC 1 cut(s) 966
Psp1406I AACGTT 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 660
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 3 cut(s) 491, 1432, 1650
PspPI GGNCC 2 cut(s) 1363, 1431
PsrI GAACNNNNNNTAC 2 cut(s) 138, 170
PsuI RGATCY 1 cut(s) 489
PvuII CAGCTG 1 cut(s) 1403
RsaI GTAC 3 cut(s) 156, 332, 1580
RsaNI GTAC 3 cut(s) 155, 331, 1579
RseI CAYNNNNRTG 1 cut(s) 1643
SacI GAGCTC 1 cut(s) 966
SaqAI TTAA 3 cut(s) 461, 563, 1301
SatI GCNGC 2 cut(s) 339, 1326
Sau3AI GATC 4 cut(s) 100, 388, 489, 1006
Sau96I GGNCC 2 cut(s) 1363, 1431
SchI GAGTC 5 cut(s) 554, 741, 850, 1277, 1338
ScrFI CCNGG 1 cut(s) 662
SduI GDGCHC 2 cut(s) 966, 1086
SfaNI GCATC 3 cut(s) 124, 174, 1337
SinI GGWCC 1 cut(s) 1363
SmiMI CAYNNNNRTG 1 cut(s) 1643
SmlI CTYRAG 3 cut(s) 542, 1311, 1373
SmoI CTYRAG 3 cut(s) 542, 1311, 1373
SpeI ACTAGT 2 cut(s) 86, 1642
SsiI CCGC 4 cut(s) 1171, 1361, 1448, 1518
SspI AATATT 1 cut(s) 869
SspMI CTAG 5 cut(s) 87, 509, 879, 959, 1643
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 1 cut(s) 660
StyI CCWWGG 2 cut(s) 493, 626
TaaI ACNGT 5 cut(s) 413, 560, 586, 1061, 1336
TaiI ACGT 3 cut(s) 240, 701, 930
TaqI TCGA 4 cut(s) 12, 352, 921, 1455
TatI WGTACW 3 cut(s) 154, 330, 1578
TfiI GAWTC 2 cut(s) 431, 674
Tru1I TTAA 3 cut(s) 461, 563, 1301
Tru9I TTAA 3 cut(s) 461, 563, 1301
TscAI CASTG 6 cut(s) 340, 1066, 1197, 1231, 1323, 1539
TseFI GTSAC 2 cut(s) 1219, 1405
TseI GCWGC 2 cut(s) 338, 1325
Tsp45I GTSAC 2 cut(s) 1219, 1405
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 6 cut(s) 340, 1066, 1197, 1231, 1323, 1539
VneI GTGCAC 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 1363
XagI CCTNNNNNAGG 1 cut(s) 877
XapI RAATTY 6 cut(s) 223, 285, 297, 422, 1065, 1303
XceI RCATGY 3 cut(s) 155, 387, 1207
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 5 cut(s) 87, 509, 879, 959, 1643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.