Rh6AG270000

(-)-germacrene D synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
46258659 .. 46262711
4053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG270000.1

Sequence Viewer

Length: 1671 bp
ATGCCTCTCCAAGTTTTAGCATCTCAAGCTCAAGCGCCAAATACCGTTGCTAATGTTAAGCGACCTTTAGCTAATTTTGCCCCAAGCATTTGGGGTGATCATTTTCTCTCTTATTCTACCATGGAGGTAAACATTCAACTTGAGCAACACGTCCTAGAACTGAAAGAAGAGGTGAAGAGGATGCTAATGGATCCCGTTAAAAAACCTTCACAACAATTGGACTTGGTTGATGACATTCAACGCCTAGGCGTGTCATATCATTTTGAAAATGAGATTGAGGGAATTTTGAAACAAATTGACCACAACTACTCTTATGGCAGTGATGATGACCTTTACACTACTGCTCTTAGTTTTCGATTACTTAGGCAGCAAGGTTATAATGTTTCATGCAATATATTCAACAAGTTCAAGGAAGGAAATGATAAGAAATTTAAAGGGACACTTTTGAGTGATGTATCAGGACTATTAAGCTTGTACGAAGCCACCCATCTTAGGATACATGGAGAAGACATACTCGAAGAGGCACTAGCCTTCACCACCACTCATCTTGAGTCAATGAAACACAGTTTAAGCCCTCCACTTTCAGAACAAGTAGCCCATGCCTTAAACCAGCCACTTCGGAAGAGCTACCCGAGAGTGGAAGCAAGATATTACTTGTCAATCTACCCAAAACGTGATTCGCATTATGAAACTCTCCTCACTTTTGCAAAGTTGGATTTTAACCTACTGCAGCAAGTCCACCAAAAGGAATTATGTGAAATTACAAGGTGGTGGAAGGACTTGGACGTGAGAAACAATCTGCCTTTTGTAAGAGACAGAGTTACCGAATGTTACTTCTGCTGGGTTTTTCCTGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACATCGCTCAAAGTAACTGCCATGGCATCTATTATCGATGACATTTATGATAGCTATGGCACACTCAAAGAACTAGAGCTCTTTACTAAAGCTATTCAGAGGTGGGATATATGTGCCATAGATCCATTGCCAGATTATATGAAAGTCTGTTATAAGGCACTGTTAGAAATCTATACTGAAATTGAAAAAGAGCTTGCAAAGGAGGGAAAGTTGCATCGAATCCACTATGTCATAGATGGTATGAAAAAGCTAGTTAAAGGTTACTTCCTTGAGGCTCAATGGTTCCACCAGAATTACATACCAACAATGGATGAATATATGGCCCTATCATTACTGACCTCAGGCGCCCCACTGCTAGTAACCACCGCTTTTGTTGGAATGGGAGATACAGCTACAGAAGATTCCTTTGATTGGCTAGCCACTTATCCCAGGGCTCTAAAAGGGTCTGCAATAGTTTGCCGACTTCTTAATGACATAGTGTCCCACAAGTTTGAGCAAAAAAGAGGACATGTTGCGTCAGCTGTGGAGTGCTACATGAAAGAATTTGGTGCCACAGAAGAAGAAGCAATAATCGAATTGCGTAGACAAGTGAGTGATGCGTGGAAGGACATGAACAAATCGTTTCTCCTCCCTAATGCTGTTTCGAGGCCACTGCTAACTCGAATTTTCAATATGGCATGCGGCACAGATGCTGTTTACAAGTATGGAGATTGTTACACTACTCCGCATGATATGATCAAGGATCTTATAGCTTCTACACTTATCCAACAAGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

556

Amino Acids

64.15

Weight (kDa)

5.83

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 202 1.1e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 259 - 499 7.4e-97 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 300 - 499 1.1e-65 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 378, 1041
AccB1I GGYRCC 2 cut(s) 1232, 1436
AccI GTMKAC 1 cut(s) 1471
AciI CCGC 3 cut(s) 1254, 1569, 1613
AclWI GGATC 4 cut(s) 185, 198, 1004, 1638
AcsI RAATTY 4 cut(s) 282, 428, 1430, 1551
AcyI GRCGYC 1 cut(s) 1233
AfaI GTAC 2 cut(s) 476, 857
AfiI CCNNNNNNNGG 5 cut(s) 492, 637, 745, 882, 1299
AflIII ACRYGT 2 cut(s) 148, 1396
AgsI TTSAA 8 cut(s) 137, 239, 266, 289, 400, 409, 1073, 1558
AhdI GACNNNNNGTC 1 cut(s) 1366
AjiI CACGTC 2 cut(s) 151, 787
AjnI CCWGG 1 cut(s) 1316
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 807
AlwI GGATC 4 cut(s) 185, 198, 1004, 1638
AlwNI CAGNNNCTG 1 cut(s) 1580
Ama87I CYCGRG 1 cut(s) 631
AoxI GGCC 2 cut(s) 1209, 1535
ApeKI GCWGC 2 cut(s) 367, 730
ApoI RAATTY 4 cut(s) 282, 428, 1430, 1551
AspA2I CCTAGG 1 cut(s) 244
AspLEI GCGC 2 cut(s) 37, 1235
AspS9I GGNCC 1 cut(s) 1210
AsuHPI GGTGA 3 cut(s) 107, 184, 526
AsuII TTCGAA 1 cut(s) 861
AsuNHI GCTAGC 1 cut(s) 1303
AvaI CYCGRG 1 cut(s) 631
AvrII CCTAGG 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 1228
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 2 cut(s) 1232, 1436
BanII GRGCYC 2 cut(s) 969, 1324
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 2 cut(s) 379, 742
BccI CCATC 2 cut(s) 495, 1118
BcgI CGANNNNNNTGC 2 cut(s) 1522, 1556
BciT130I CCWGG 1 cut(s) 1318
BciVI GTATCC 1 cut(s) 489
BclI TGATCA 2 cut(s) 97, 1623
BcoDI GTCTC 1 cut(s) 807
BfaI CTAG 8 cut(s) 155, 245, 527, 882, 962, 1139, 1244, 1304
BfmI CTRYAG 2 cut(s) 728, 1281
BfoI RGCGCY 2 cut(s) 38, 1236
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 3 cut(s) 368, 731, 1570
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 3 cut(s) 369, 732, 1571
Bme1390I CCNGG 1 cut(s) 1318
BmeRI GACNNNNNGTC 1 cut(s) 1366
BmeT110I CYCGRG 1 cut(s) 631
BmgBI CACGTC 2 cut(s) 151, 787
BmgT120I GGNCC 1 cut(s) 1210
BmiI GGNNCC 4 cut(s) 192, 1172, 1234, 1438
BmrFI CCNGG 1 cut(s) 1318
BmsI GCATC 6 cut(s) 29, 171, 923, 1111, 1474, 1567
BmtI GCTAGC 1 cut(s) 1307
BpiI GAAGAC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 861
BpuEI CTTGAG 5 cut(s) 9, 15, 161, 569, 1178
Bsa29I ATCGAT 1 cut(s) 924
BsaHI GRCGYC 1 cut(s) 1233
BsaJI CCNNGG 5 cut(s) 120, 244, 909, 1316, 1317
BsaXI ACNNNNNCTCC 2 cut(s) 1082, 1112
Bsc4I CCNNNNNNNGG 5 cut(s) 492, 637, 745, 882, 1299
Bse21I CCTNAGG 1 cut(s) 1228
Bse3DI GCAATG 1 cut(s) 1013
BseBI CCWGG 1 cut(s) 1318
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 5 cut(s) 120, 244, 909, 1316, 1317
BseGI GGATG 2 cut(s) 186, 1204
BseLI CCNNNNNNNGG 5 cut(s) 492, 637, 745, 882, 1299
BseMI GCAATG 1 cut(s) 1013
BseMII CTCAG 1 cut(s) 1242
BseRI GAGGAG 2 cut(s) 686, 1505
BseXI GCAGC 2 cut(s) 379, 742
BseYI CCCAGC 1 cut(s) 840
BshFI GGCC 2 cut(s) 1211, 1537
BshNI GGYRCC 2 cut(s) 1232, 1436
BshVI ATCGAT 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 969
BsiHKCI CYCGRG 1 cut(s) 631
BslFI GGGAC 2 cut(s) 451, 1354
BslI CCNNNNNNNGG 5 cut(s) 492, 637, 745, 882, 1299
BsmAI GTCTC 1 cut(s) 807
BsmFI GGGAC 2 cut(s) 451, 1354
BsnI GGCC 2 cut(s) 1211, 1537
BsoBI CYCGRG 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 969, 1324
Bsp143I GATC 5 cut(s) 97, 190, 1009, 1623, 1630
Bsp19I CCATGG 2 cut(s) 120, 909
BspACI CCGC 3 cut(s) 1254, 1569, 1613
BspANI GGCC 2 cut(s) 1211, 1537
BspCNI CTCAG 1 cut(s) 1241
BspDI ATCGAT 1 cut(s) 924
BspLI GGNNCC 4 cut(s) 192, 1172, 1234, 1438
BspMAI CTGCAG 1 cut(s) 732
BspOI GCTAGC 1 cut(s) 1307
BspPI GGATC 4 cut(s) 185, 198, 1004, 1638
BspQI GCTCTTC 1 cut(s) 617
BspT104I TTCGAA 1 cut(s) 861
BspT107I GGYRCC 2 cut(s) 1232, 1436
BsrDI GCAATG 1 cut(s) 1013
BssECI CCNNGG 5 cut(s) 120, 244, 909, 1316, 1317
BssMI GATC 5 cut(s) 97, 190, 1009, 1623, 1630
BssNI GRCGYC 1 cut(s) 1233
BssT1I CCWWGG 3 cut(s) 120, 244, 909
Bst2UI CCWGG 1 cut(s) 1318
Bst4CI ACNGT 3 cut(s) 46, 566, 1050
Bst6I CTCTTC 4 cut(s) 162, 170, 513, 617
BstACI GRCGYC 1 cut(s) 1233
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 1083, 1305, 1567
BstDEI CTNAG 4 cut(s) 347, 362, 491, 1228
BstDSI CCRYGG 2 cut(s) 120, 909
BstENI CCTNNNNNAGG 1 cut(s) 880
BstF5I GGATG 2 cut(s) 186, 1204
BstH2I RGCGCY 2 cut(s) 38, 1236
BstHHI GCGC 2 cut(s) 37, 1235
BstKTI GATC 5 cut(s) 100, 193, 1012, 1626, 1633
BstMAI GTCTC 1 cut(s) 807
BstMBI GATC 5 cut(s) 97, 190, 1009, 1623, 1630
BstMWI GCNNNNNNNGC 2 cut(s) 26, 77
BstNI CCWGG 1 cut(s) 1318
BstNSI RCATGY 2 cut(s) 1400, 1569
BstSCI CCNGG 1 cut(s) 1316
BstSFI CTRYAG 2 cut(s) 728, 1281
BstV1I GCAGC 2 cut(s) 379, 742
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 3 cut(s) 190, 1009, 1630
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 3 cut(s) 190, 1009, 1630
Bsu15I ATCGAT 1 cut(s) 924
Bsu36I CCTNAGG 1 cut(s) 1228
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 1211, 1537
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 2 cut(s) 120, 909
BtgZI GCGATG 1 cut(s) 876
BtrI CACGTC 2 cut(s) 151, 787
BtsCI GGATG 2 cut(s) 186, 1204
BtsI GCAGTG 3 cut(s) 325, 1238, 1538
BtsIMutI CAGTG 4 cut(s) 325, 1046, 1238, 1538
Cac8I GCNNGC 3 cut(s) 1083, 1305, 1567
CaiI CAGNNNCTG 1 cut(s) 1580
CfoI GCGC 2 cut(s) 37, 1235
Cfr13I GGNCC 1 cut(s) 1210
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 1392
Csp6I GTAC 2 cut(s) 475, 856
CspCI CAANNNNNGTGG 4 cut(s) 529, 564, 1240, 1275
CviQI GTAC 2 cut(s) 475, 856
DdeI CTNAG 4 cut(s) 347, 362, 491, 1228
DinI GGCGCC 1 cut(s) 1234
DpnI GATC 5 cut(s) 99, 192, 1011, 1625, 1632
DpnII GATC 5 cut(s) 97, 190, 1009, 1623, 1630
DraI TTTAAA 1 cut(s) 433
DriI GACNNNNNGTC 1 cut(s) 1366
Eam1104I CTCTTC 4 cut(s) 162, 170, 513, 617
Eam1105I GACNNNNNGTC 1 cut(s) 1366
EarI CTCTTC 4 cut(s) 162, 170, 513, 617
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 3 cut(s) 120, 244, 909
Eco24I GRGCYC 2 cut(s) 969, 1324
Eco53kI GAGCTC 1 cut(s) 967
Eco81I CCTNAGG 1 cut(s) 1228
Eco88I CYCGRG 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 967
EcoNI CCTNNNNNAGG 1 cut(s) 880
EcoRII CCWGG 1 cut(s) 1316
EcoT14I CCWWGG 3 cut(s) 120, 244, 909
EcoT38I GRGCYC 2 cut(s) 969, 1324
EgeI GGCGCC 1 cut(s) 1234
EheI GGCGCC 1 cut(s) 1234
ErhI CCWWGG 3 cut(s) 120, 244, 909
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 451, 1354
FbaI TGATCA 2 cut(s) 97, 1623
FblI GTMKAC 1 cut(s) 1471
Fnu4HI GCNGC 3 cut(s) 368, 731, 1570
FokI GGATG 2 cut(s) 193, 1211
FriOI GRGCYC 2 cut(s) 969, 1324
Fsp4HI GCNGC 3 cut(s) 368, 731, 1570
FspBI CTAG 8 cut(s) 155, 245, 527, 882, 962, 1139, 1244, 1304
GlaI GCGC 2 cut(s) 36, 1234
GluI GCNGC 3 cut(s) 368, 731, 1570
GsaI CCCAGC 1 cut(s) 844
HaeII RGCGCY 2 cut(s) 38, 1236
HaeIII GGCC 2 cut(s) 1211, 1537
HgaI GACGC 1 cut(s) 1392
HhaI GCGC 2 cut(s) 37, 1235
Hin1I GRCGYC 1 cut(s) 1233
Hin6I GCGC 2 cut(s) 35, 1233
HinP1I GCGC 2 cut(s) 35, 1233
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 4 cut(s) 551, 677, 1107, 1289
HphI GGTGA 3 cut(s) 107, 184, 526
Hpy166II GTNNAC 5 cut(s) 130, 739, 856, 1472, 1585
Hpy188I TCNGA 3 cut(s) 586, 621, 987
Hpy188III TCNNGA 2 cut(s) 459, 548
Hpy8I GTNNAC 5 cut(s) 130, 739, 856, 1472, 1585
HpyAV CCTTC 5 cut(s) 216, 407, 541, 769, 1486
HpyCH4III ACNGT 3 cut(s) 46, 566, 1050
HpyCH4IV ACGT 3 cut(s) 150, 673, 786
HpyCH4V TGCA 6 cut(s) 390, 707, 730, 1085, 1102, 1337
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 77
HpyF3I CTNAG 4 cut(s) 347, 362, 491, 1228
HpySE526I ACGT 3 cut(s) 150, 673, 786
Hsp92I GRCGYC 1 cut(s) 1233
HspAI GCGC 2 cut(s) 35, 1233
KasI GGCGCC 1 cut(s) 1232
Ksp22I TGATCA 2 cut(s) 97, 1623
Kzo9I GATC 5 cut(s) 97, 190, 1009, 1623, 1630
LguI GCTCTTC 1 cut(s) 617
LpnPI CCDG 9 cut(s) 444, 623, 826, 864, 1032, 1190, 1215, 1303, 1330
Lsp1109I GCAGC 2 cut(s) 379, 742
LweI GCATC 6 cut(s) 29, 171, 923, 1111, 1474, 1567
MaeI CTAG 8 cut(s) 155, 245, 527, 882, 962, 1139, 1244, 1304
MaeII ACGT 3 cut(s) 150, 673, 786
MaeIII GTNAC 6 cut(s) 820, 830, 901, 1148, 1246, 1601
MalI GATC 5 cut(s) 99, 192, 1011, 1625, 1632
MboI GATC 5 cut(s) 97, 190, 1009, 1623, 1630
MboII GAAGA 8 cut(s) 179, 187, 518, 530, 634, 1298, 1457, 1460
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 3 cut(s) 190, 1009, 1630
MhlI GDGCHC 2 cut(s) 969, 1324
Mly113I GGCGCC 1 cut(s) 1233
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 693, 1243
MseI TTAA 9 cut(s) 57, 198, 432, 467, 569, 605, 720, 1143, 1356
MspA1I CMGCKG 1 cut(s) 1409
MspR9I CCNGG 1 cut(s) 1318
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 1318
MwoI GCNNNNNNNGC 2 cut(s) 26, 77
NarI GGCGCC 1 cut(s) 1233
NcoI CCATGG 2 cut(s) 120, 909
NdeII GATC 5 cut(s) 97, 190, 1009, 1623, 1630
NheI GCTAGC 1 cut(s) 1303
NlaIV GGNNCC 4 cut(s) 192, 1172, 1234, 1438
NspI RCATGY 2 cut(s) 1400, 1569
NspV TTCGAA 1 cut(s) 861
PaeI GCATGC 1 cut(s) 1569
PasI CCCWGGG 1 cut(s) 1317
PciI ACATGT 1 cut(s) 1396
PciSI GCTCTTC 1 cut(s) 617
PfeI GAWTC 3 cut(s) 677, 1107, 1289
PkrI GCNGC 3 cut(s) 369, 732, 1571
PleI GAGTC 1 cut(s) 559
PluTI GGCGCC 1 cut(s) 1236
PpsI GAGTC 1 cut(s) 559
PscI ACATGT 1 cut(s) 1396
PsiI TTATAA 2 cut(s) 378, 1041
Psp124BI GAGCTC 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 1316
PspFI CCCAGC 1 cut(s) 840
PspGI CCWGG 1 cut(s) 1316
PspN4I GGNNCC 4 cut(s) 192, 1172, 1234, 1438
PspPI GGNCC 1 cut(s) 1210
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 1580
PsuI RGATCY 3 cut(s) 190, 1009, 1630
PvuII CAGCTG 1 cut(s) 1409
RsaI GTAC 2 cut(s) 476, 857
RsaNI GTAC 2 cut(s) 475, 856
SacI GAGCTC 1 cut(s) 969
SapI GCTCTTC 1 cut(s) 617
SaqAI TTAA 9 cut(s) 57, 198, 432, 467, 569, 605, 720, 1143, 1356
SatI GCNGC 3 cut(s) 368, 731, 1570
Sau3AI GATC 5 cut(s) 97, 190, 1009, 1623, 1630
Sau96I GGNCC 1 cut(s) 1210
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 1318
SduI GDGCHC 2 cut(s) 969, 1324
SfaNI GCATC 6 cut(s) 29, 171, 923, 1111, 1474, 1567
SfcI CTRYAG 2 cut(s) 728, 1281
SfoI GGCGCC 1 cut(s) 1234
SfuI TTCGAA 1 cut(s) 861
SmlI CTYRAG 5 cut(s) 24, 30, 140, 548, 1157
SmoI CTYRAG 5 cut(s) 24, 30, 140, 548, 1157
SphI GCATGC 1 cut(s) 1569
SsiI CCGC 3 cut(s) 1254, 1569, 1613
SspDI GGCGCC 1 cut(s) 1232
SspI AATATT 1 cut(s) 872
SspMI CTAG 8 cut(s) 155, 245, 527, 882, 962, 1139, 1244, 1304
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 1 cut(s) 1316
StyI CCWWGG 3 cut(s) 120, 244, 909
TaaI ACNGT 3 cut(s) 46, 566, 1050
TaiI ACGT 3 cut(s) 153, 676, 789
TaqI TCGA 8 cut(s) 355, 516, 861, 924, 1105, 1461, 1532, 1549
TatI WGTACW 1 cut(s) 855
TauI GCSGC 1 cut(s) 1572
TfiI GAWTC 3 cut(s) 677, 1107, 1289
Tru1I TTAA 9 cut(s) 57, 198, 432, 467, 569, 605, 720, 1143, 1356
Tru9I TTAA 9 cut(s) 57, 198, 432, 467, 569, 605, 720, 1143, 1356
TscAI CASTG 4 cut(s) 325, 1053, 1245, 1545
TseI GCWGC 2 cut(s) 367, 730
TspDTI ATGAA 8 cut(s) 375, 572, 702, 1043, 1145, 1215, 1439, 1514
TspRI CASTG 4 cut(s) 325, 1053, 1245, 1545
XagI CCTNNNNNAGG 1 cut(s) 880
XapI RAATTY 4 cut(s) 282, 428, 1430, 1551
XceI RCATGY 2 cut(s) 1400, 1569
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 1471
XspI CTAG 8 cut(s) 155, 245, 527, 882, 962, 1139, 1244, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.