RchiOBHm_Chr7g0212441

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000053
Physical Location & Seq
Reverse (-)
29706120 .. 29710601
4482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19009

Sequence Viewer

Length: 1677 bp
ATGTCCTTCCAAGTTTTAGCTTCTCAAGCTCAAGCACGAGATACCGTTGCTGATGTTAAGCGACATTCAGCTAATAATTATACCCCAAACATTTGGGGTGATCATTTTCTCCATTATGCTACCACGGAAGTTGACATTAAACTTGAGCAACACGTCCGAGAACTAAAAGATCAGGTGAAGAGGATGCTAATGGATCCCGTTAAAAAACCTTCACAACAATTGGACTTGGTTGATAACATTCAACGCCTAGGTGTGTCCTATCATTTTGAAAATGAGATTGATGGAATTTTGAAACAAATTCACCACAACTACTCAAATGGTAGTGATGATGACCTTTACACTACTGCTCTCATTTTTCGGCTACTTAGACAACAAGGTTATAGCGTTTCATGCGATATGTTCAACAAATTCAGGGAAGGAAATGATCAGAAATTCAAGGCATCTCTTCTGAGTGATGTATCAGGACTATTAAGCTTGTACGAAGCCACCCATCTTAGGATACGTGGAGAAGACCTACTTGAAGAGGCACTAGACTTCACCACCACTCATCTTGAGTCGATCAAACACAGTTTAAGCCCTTCACTTTCAAAACAAGTAGTCCATTCCTTAAATCAGGCACTTCGGAGGGGCATCCCGAGGGTGGAAGCAAGATATTACTTGTCAATCTACGCAGAACACGATTCACATAATGAAACTCTCCTGACTTTTGCAAAGTTAGATTTCAACCTACTGCAACAAGTCCATCAAAAGGAACTATGTGAAATTACAAGGTGGTGGAAGGACTTGGATGTCACAAACAAGCTGCCGTTCACCAGAGACAGAATTACCGAAATTTACTTCATTTGGGCTTTGTCAGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACAACATGCAAAGTCACTGCCATGATGGCTATCCTCGATGACATTTATGATACACGTGGCACACTCGAAGAACTAGAGCTTTTTACTGAAGTTATTCACAGGTGGGATATCTGTGCCATAGATCCATTGCCAGATTATATGAAAGTCTGTTATAAGGCATTGTTAGAAGTTTATACTGAAATTGAAGAAGAGCTTGCAAAGGAGGGAAAGTTGTATCGAATCCATTATGCCAGAGAAGCTATGAAAAAACAAGCTGAAGTTTACTTCCTTGAAGCTAAATGGCTGCACCACCAATACATACCAACGATGGATGAATATATGGCCCTATCATTATTGACCTCAGGCTACCCTCAACTAATAACAACATCTTTTGTTGCAATGGGAGATGTTGCTACACAAGACTCCTTCGATTGGTTGGACACTTATCCCAGGGCTGTAAAAGGGGCTGCAGTAGTTGCTCGACTCATGGATGATATAGCGGACCACAAGTTTGAGGAAAAGAGAGGACATGTTATCTCAGCTGTGCAGTGCTACATGAATGAATGTGGTGTCACAGAAGAAGAAGCAATAACTGTATTGCGTAGACAAGTGAGTGACGCATGGAAGGACATCAACGAATCATTCCTCCTTCCTAATGCTGTCCCGAGGCCACTACTAACCCGAATTCTTAATTTTGCATGTGCCATGGATGTTTCATACAAGTATGAAGATGGTTTCTCTACTCATCATGAGACTGTGCTCAAGGATTTTATAATTTCTACGCTTGTCCAACCCCTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

558

Amino Acids

64.77

Weight (kDa)

5.46

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 31 - 203 8e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 260 - 500 3.6e-93 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 301 - 500 5.2e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1044, 1643
AasI GACNNNNNNGTC 1 cut(s) 788
AccI GTMKAC 1 cut(s) 1474
AciI CCGC 1 cut(s) 1370
AclWI GGATC 3 cut(s) 188, 201, 1007
AcsI RAATTY 6 cut(s) 285, 297, 407, 431, 831, 1554
AcuI CTGAAG 2 cut(s) 999, 1167
AcvI CACGTG 1 cut(s) 947
AfaI GTAC 2 cut(s) 479, 860
AfiI CCNNNNNNNGG 5 cut(s) 495, 640, 748, 885, 1302
AflIII ACRYGT 3 cut(s) 151, 944, 1399
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 1319
Alw21I GWGCWC 1 cut(s) 1632
Alw26I GTCTC 2 cut(s) 810, 1616
AlwI GGATC 3 cut(s) 188, 201, 1007
Ama87I CYCGRG 2 cut(s) 634, 1534
AoxI GGCC 2 cut(s) 1212, 1538
ApeKI GCWGC 3 cut(s) 802, 1174, 1337
ApoI RAATTY 6 cut(s) 285, 297, 407, 431, 831, 1554
ArsI GACNNNNNNTTYG 2 cut(s) 1364, 1396
Asp700I GAANNNNTTC 1 cut(s) 984
AspA2I CCTAGG 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 1213, 1372
AsuHPI GGTGA 5 cut(s) 110, 187, 293, 529, 802
AsuII TTCGAA 1 cut(s) 864
AvaI CYCGRG 2 cut(s) 634, 1534
AvaII GGWCC 1 cut(s) 1372
AvrII CCTAGG 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 1231
BamHI GGATCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 36
BbrPI CACGTG 1 cut(s) 947
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 1632
BbvI GCAGC 3 cut(s) 789, 1161, 1324
BccI CCATC 6 cut(s) 275, 498, 750, 910, 1192, 1595
BceAI ACGGC 1 cut(s) 790
BciT130I CCWGG 1 cut(s) 1321
BciVI GTATCC 1 cut(s) 492
BclI TGATCA 2 cut(s) 100, 424
BcoDI GTCTC 2 cut(s) 810, 1616
BfaI CTAG 4 cut(s) 248, 530, 885, 965
BfmI CTRYAG 1 cut(s) 1338
BfuI GTATCC 1 cut(s) 492
BglI GCCNNNNNGGC 1 cut(s) 917
BisI GCNGC 3 cut(s) 803, 1175, 1338
BlnI CCTAGG 1 cut(s) 247
BlsI GCNGC 3 cut(s) 804, 1176, 1339
Bme1390I CCNGG 1 cut(s) 1321
Bme18I GGWCC 1 cut(s) 1372
BmeT110I CYCGRG 2 cut(s) 634, 1534
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 1213, 1372
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 1321
BmsI GCATC 3 cut(s) 174, 449, 639
BpiI GAAGAC 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 864
BpuEI CTTGAG 5 cut(s) 9, 15, 164, 572, 1616
BsaAI YACGTR 2 cut(s) 503, 947
BsaBI GATNNNNATC 1 cut(s) 920
BsaJI CCNNGG 7 cut(s) 123, 247, 635, 1319, 1320, 1535, 1575
BsaXI ACNNNNNCTCC 2 cut(s) 1085, 1115
Bsc4I CCNNNNNNNGG 5 cut(s) 495, 640, 748, 885, 1302
Bse21I CCTNAGG 1 cut(s) 1231
Bse3DI GCAATG 2 cut(s) 1016, 1275
Bse8I GATNNNNATC 1 cut(s) 920
BseBI CCWGG 1 cut(s) 1321
BseDI CCNNGG 7 cut(s) 123, 247, 635, 1319, 1320, 1535, 1575
BseGI GGATG 6 cut(s) 189, 630, 793, 1207, 1366, 1585
BseJI GATNNNNATC 1 cut(s) 920
BseLI CCNNNNNNNGG 5 cut(s) 495, 640, 748, 885, 1302
BseMI GCAATG 2 cut(s) 1016, 1275
BseMII CTCAG 3 cut(s) 440, 1245, 1422
BseXI GCAGC 3 cut(s) 789, 1161, 1324
BsgI GTGCAG 2 cut(s) 1160, 1436
BshFI GGCC 2 cut(s) 1214, 1540
BsiHKAI GWGCWC 1 cut(s) 1632
BsiHKCI CYCGRG 2 cut(s) 634, 1534
BslFI GGGAC 1 cut(s) 1517
BslI CCNNNNNNNGG 5 cut(s) 495, 640, 748, 885, 1302
BsmAI GTCTC 2 cut(s) 810, 1616
BsmFI GGGAC 1 cut(s) 1517
BsnI GGCC 2 cut(s) 1214, 1540
BsoBI CYCGRG 2 cut(s) 634, 1534
Bsp119I TTCGAA 1 cut(s) 864
Bsp1286I GDGCHC 1 cut(s) 1632
Bsp143I GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
Bsp19I CCATGG 1 cut(s) 1575
BspACI CCGC 1 cut(s) 1370
BspANI GGCC 2 cut(s) 1214, 1540
BspCNI CTCAG 3 cut(s) 441, 1244, 1421
BspHI TCATGA 1 cut(s) 1618
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 1342
BspPI GGATC 3 cut(s) 188, 201, 1007
BspQI GCTCTTC 1 cut(s) 1074
BspT104I TTCGAA 1 cut(s) 864
BsrDI GCAATG 2 cut(s) 1016, 1275
BssECI CCNNGG 7 cut(s) 123, 247, 635, 1319, 1320, 1535, 1575
BssMI GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 247, 1575
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 1321
Bst4CI ACNGT 4 cut(s) 46, 569, 1465, 1627
Bst6I CTCTTC 4 cut(s) 173, 450, 516, 1074
BstAPI GCANNNNNTGC 1 cut(s) 1346
BstBAI YACGTR 2 cut(s) 503, 947
BstBI TTCGAA 1 cut(s) 864
BstC8I GCNNGC 1 cut(s) 1086
BstDEI CTNAG 5 cut(s) 365, 449, 494, 1231, 1408
BstDSI CCRYGG 2 cut(s) 123, 1575
BstENI CCTNNNNNAGG 1 cut(s) 883
BstF5I GGATG 6 cut(s) 189, 630, 793, 1207, 1366, 1585
BstKTI GATC 6 cut(s) 103, 172, 196, 427, 561, 1015
BstMAI GTCTC 2 cut(s) 810, 1616
BstMBI GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 26, 390, 917, 1127, 1346
BstNI CCWGG 1 cut(s) 1321
BstNSI RCATGY 3 cut(s) 900, 1403, 1572
BstSCI CCNGG 1 cut(s) 1319
BstSFI CTRYAG 1 cut(s) 1338
BstV1I GCAGC 3 cut(s) 789, 1161, 1324
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 193, 1012
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 2 cut(s) 193, 1012
Bsu36I CCTNAGG 1 cut(s) 1231
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 2 cut(s) 1214, 1540
BtgI CCRYGG 2 cut(s) 123, 1575
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 6 cut(s) 189, 630, 793, 1207, 1366, 1585
BtsI GCAGTG 2 cut(s) 906, 1424
BtsIMutI CAGTG 3 cut(s) 861, 906, 1424
Cac8I GCNNGC 1 cut(s) 1086
CciI TCATGA 1 cut(s) 1618
Cfr13I GGNCC 2 cut(s) 1213, 1372
CseI GACGC 1 cut(s) 1496
Csp6I GTAC 2 cut(s) 478, 859
CspCI CAANNNNNGTGG 4 cut(s) 112, 147, 532, 567
CviQI GTAC 2 cut(s) 478, 859
DdeI CTNAG 5 cut(s) 365, 449, 494, 1231, 1408
DpnI GATC 6 cut(s) 102, 171, 195, 426, 560, 1014
DpnII GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
DrdI GACNNNNNNGTC 1 cut(s) 788
DseDI GACNNNNNNGTC 1 cut(s) 788
Eam1104I CTCTTC 4 cut(s) 173, 450, 516, 1074
EarI CTCTTC 4 cut(s) 173, 450, 516, 1074
Eco130I CCWWGG 2 cut(s) 247, 1575
Eco32I GATATC 1 cut(s) 1000
Eco47I GGWCC 1 cut(s) 1372
Eco57I CTGAAG 2 cut(s) 999, 1167
Eco72I CACGTG 1 cut(s) 947
Eco81I CCTNAGG 1 cut(s) 1231
Eco88I CYCGRG 2 cut(s) 634, 1534
EcoNI CCTNNNNNAGG 1 cut(s) 883
EcoRI GAATTC 1 cut(s) 1554
EcoRII CCWGG 1 cut(s) 1319
EcoRV GATATC 1 cut(s) 1000
EcoT14I CCWWGG 2 cut(s) 247, 1575
ErhI CCWWGG 2 cut(s) 247, 1575
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 1068, 1100
FaqI GGGAC 1 cut(s) 1517
FbaI TGATCA 2 cut(s) 100, 424
FblI GTMKAC 1 cut(s) 1474
Fnu4HI GCNGC 3 cut(s) 803, 1175, 1338
FokI GGATG 6 cut(s) 196, 617, 800, 1214, 1373, 1592
Fsp4HI GCNGC 3 cut(s) 803, 1175, 1338
FspBI CTAG 4 cut(s) 248, 530, 885, 965
GluI GCNGC 3 cut(s) 803, 1175, 1338
HaeIII GGCC 2 cut(s) 1214, 1540
HgaI GACGC 1 cut(s) 1496
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 6 cut(s) 554, 680, 1110, 1292, 1353, 1508
HphI GGTGA 5 cut(s) 110, 187, 293, 529, 802
Hpy166II GTNNAC 5 cut(s) 133, 810, 859, 1153, 1475
Hpy188I TCNGA 4 cut(s) 158, 429, 450, 624
Hpy188III TCNNGA 6 cut(s) 462, 551, 634, 700, 1534, 1619
Hpy8I GTNNAC 5 cut(s) 133, 810, 859, 1153, 1475
HpyAV CCTTC 8 cut(s) 16, 219, 410, 588, 772, 1306, 1489, 1529
HpyCH4III ACNGT 4 cut(s) 46, 569, 1465, 1627
HpyCH4IV ACGT 3 cut(s) 153, 502, 946
HpyCH4V TGCA 9 cut(s) 710, 733, 900, 1088, 1177, 1268, 1340, 1417, 1568
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 390, 917, 1127, 1346
HpyF3I CTNAG 5 cut(s) 365, 449, 494, 1231, 1408
HpySE526I ACGT 3 cut(s) 153, 502, 946
Ksp22I TGATCA 2 cut(s) 100, 424
Kzo9I GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
LguI GCTCTTC 1 cut(s) 1074
Lsp1109I GCAGC 3 cut(s) 789, 1161, 1324
LweI GCATC 3 cut(s) 174, 449, 639
MaeI CTAG 4 cut(s) 248, 530, 885, 965
MaeII ACGT 3 cut(s) 153, 502, 946
MaeIII GTNAC 4 cut(s) 790, 904, 1441, 1484
MalI GATC 6 cut(s) 102, 171, 195, 426, 560, 1014
MboI GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 2 cut(s) 193, 1012
MhlI GDGCHC 1 cut(s) 1632
MlyI GAGTC 3 cut(s) 563, 1286, 1347
MmeI TCCRAC 1 cut(s) 1287
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 7 cut(s) 57, 138, 201, 470, 572, 608, 1560
MslI CAYNNNNRTG 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 1412
MspR9I CCNGG 1 cut(s) 1321
MunI CAATTG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 1321
MwoI GCNNNNNNNGC 5 cut(s) 26, 390, 917, 1127, 1346
NcoI CCATGG 1 cut(s) 1575
NdeII GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 4 cut(s) 790, 904, 1441, 1484
NspI RCATGY 3 cut(s) 900, 1403, 1572
NspV TTCGAA 1 cut(s) 864
PagI TCATGA 1 cut(s) 1618
PasI CCCWGGG 1 cut(s) 1320
PciI ACATGT 1 cut(s) 1399
PciSI GCTCTTC 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 3 cut(s) 680, 1110, 1508
PkrI GCNGC 3 cut(s) 804, 1176, 1339
PleI GAGTC 3 cut(s) 562, 1286, 1347
PmaCI CACGTG 1 cut(s) 947
PmlI CACGTG 1 cut(s) 947
PpsI GAGTC 3 cut(s) 562, 1286, 1347
Ppu21I YACGTR 2 cut(s) 503, 947
PscI ACATGT 1 cut(s) 1399
PsiI TTATAA 2 cut(s) 1044, 1643
Psp6I CCWGG 1 cut(s) 1319
PspCI CACGTG 1 cut(s) 947
PspGI CCWGG 1 cut(s) 1319
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 1213, 1372
PstI CTGCAG 1 cut(s) 1342
PsuI RGATCY 2 cut(s) 193, 1012
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 2 cut(s) 479, 860
RsaNI GTAC 2 cut(s) 478, 859
RseI CAYNNNNRTG 1 cut(s) 911
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 7 cut(s) 57, 138, 201, 470, 572, 608, 1560
SatI GCNGC 3 cut(s) 803, 1175, 1338
Sau3AI GATC 6 cut(s) 100, 169, 193, 424, 558, 1012
Sau96I GGNCC 2 cut(s) 1213, 1372
SchI GAGTC 3 cut(s) 563, 1286, 1347
ScrFI CCNGG 1 cut(s) 1321
SduI GDGCHC 1 cut(s) 1632
SfaNI GCATC 3 cut(s) 174, 449, 639
SfcI CTRYAG 1 cut(s) 1338
SfuI TTCGAA 1 cut(s) 864
SinI GGWCC 1 cut(s) 1372
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 5 cut(s) 24, 30, 143, 551, 1631
SmoI CTYRAG 5 cut(s) 24, 30, 143, 551, 1631
SsiI CCGC 1 cut(s) 1370
SspI AATATT 1 cut(s) 875
SspMI CTAG 4 cut(s) 248, 530, 885, 965
StyD4I CCNGG 1 cut(s) 1319
StyI CCWWGG 2 cut(s) 247, 1575
TaaI ACNGT 4 cut(s) 46, 569, 1465, 1627
TaiI ACGT 3 cut(s) 156, 505, 949
TaqI TCGA 7 cut(s) 557, 864, 927, 957, 1108, 1299, 1351
TatI WGTACW 1 cut(s) 858
TfiI GAWTC 3 cut(s) 680, 1110, 1508
Tru1I TTAA 7 cut(s) 57, 138, 201, 470, 572, 608, 1560
Tru9I TTAA 7 cut(s) 57, 138, 201, 470, 572, 608, 1560
TscAI CASTG 3 cut(s) 861, 913, 1424
TseFI GTSAC 4 cut(s) 790, 904, 1441, 1484
TseI GCWGC 3 cut(s) 802, 1174, 1337
Tsp45I GTSAC 4 cut(s) 790, 904, 1441, 1484
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 3 cut(s) 861, 913, 1424
VpaK11BI GGWCC 1 cut(s) 1372
XagI CCTNNNNNAGG 1 cut(s) 883
XapI RAATTY 6 cut(s) 285, 297, 407, 431, 831, 1554
XceI RCATGY 3 cut(s) 900, 1403, 1572
XmaJI CCTAGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 1474
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 4 cut(s) 248, 530, 885, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.