Rmu_sc0002281.1_g000021

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002281.1
OG0000053
Physical Location & Seq
Forward (+)
78526 .. 82048
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002281.1_g000021.1.cds

Sequence Viewer

Length: 1761 bp
atgtctcttcaagttttggcatctcaggctcaggctcagaggccagatagtgttgctgatgttaagcgaccgtcggctaattctaccccaagcatttggggtgatcattttctctcctatgctaccacggaagttgacactaaacttgagcaacatgtccgagaactgaaagaagaggtgaagaggatgctaatggactccttaaaaaacccttcacaacaattggacttggttgatgacattcaacgcctaggtgtgtactatcattttgaaaatgagattgatgaaattttgaaacaaattcaccacaactactcctatggtagtgaagatgacctttacactactgctctctgttttcgattgctgagacaacaaggttacaatgtttcatgcgataatatgatatatagaggctcgtataatggattccatggtgatgcagatatgttcaacaagtacatggaaggaaatgataaaaaatttaaggcatctctcttgagtgatgtatccgggctattaagcttgtatgaagccgcacatcttaggatacatggagaagacatacttgaagaggctctaaccttcaccatcactcatcttgagttgatcaaacatagtttaagccctccacttttgaaacaagtagctcattccttaactcagccacttcgaaagggcatcaatagggtggaagctaaatattacttgtcaatctatcatgaacgcgattcacataacgagactctcctgacttttgcaaagttggatttcaacctattgcagcaagtccatcaaaaggaactatgtgaaattactaggtggtggaaggacttggacgtgagaaacacgttgccgtttacaagagatagagttacagaagtatacttcggctgggctttgtcagtgtacttcgaacctcaatattcctttgctaggaggacatcatgcaaagtcgccgccatgacatctattatggatgacatttatgatacccatggcacactcgaagaattagagcattttactgaagctattcagagggctaacttttcaactgtctgcttgtcgattaggtgggacgtctatgctatagatttgttaccagattatatgaaagtctgttataaggcgctgttagaagtttatactgaaattgaagaagagcttgcaaaggaaggaaagttgcatcaaatccactacgccagagaagctatgaaaaagcaagctgaaaattacttccttgaagctaaatggttgcaccagaaacacataccaacaatggatgaatatatgtccctagcagtaatgacagcaggctaccctctgctaataacaacatcttttgttgtaatgggaaatattgctacacaagattccttcgattggttggccacttatcccaaggctgtaaaaggggctgcagtagttgcccgactcatggatgacatagcagaccataagtttgagcaaaagagaggacatgttacctcagctgtagggtgctacatgaaagaatatggtgccacagaagaagaagcaataatcggtttgcgtagagaattgagtgacgcatggaaggacataaatgaatcgttccacctccctaatgttgttccgaggccattgctaactcgaataattaattttgcatgtatcatggatgttgtatacaagtacgcagatggttacaatactcatgataatactgtgctcaaggattttatagtttctacccttgtccaacccgtgcctgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

586

Amino Acids

67.66

Weight (kDa)

5.54

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1128
AatII GACGTC 1 cut(s) 1086
AccB1I GGYRCC 1 cut(s) 1523
AccI GTMKAC 2 cut(s) 885, 1671
AccII CGCG 1 cut(s) 729
AciI CCGC 2 cut(s) 537, 960
AcoI YGGCCR 1 cut(s) 1392
AcsI RAATTY 3 cut(s) 288, 300, 482
AcuI CTGAAG 1 cut(s) 1050
AcyI GRCGYC 1 cut(s) 1083
AfaI GTAC 4 cut(s) 260, 461, 911, 1679
AfiI CCNNNNNNNGG 4 cut(s) 799, 936, 1386, 1441
AflIII ACRYGT 3 cut(s) 154, 849, 1483
AjiI CACGTC 1 cut(s) 841
AluBI AGCT 9 cut(s) 525, 650, 698, 1034, 1168, 1214, 1229, 1250, 1496
AluI AGCT 9 cut(s) 525, 650, 698, 1034, 1168, 1214, 1229, 1250, 1496
Alw21I GWGCWC 1 cut(s) 1716
Alw26I GTCTC 3 cut(s) 9, 364, 737
AoxI GGCC 3 cut(s) 41, 1392, 1622
ApeKI GCWGC 2 cut(s) 784, 1421
ApoI RAATTY 3 cut(s) 288, 300, 482
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
AseI ATTAAT 1 cut(s) 1644
Asp700I GAANNNNTTC 1 cut(s) 1035
AspA2I CCTAGG 1 cut(s) 250
AspLEI GCGC 1 cut(s) 1135
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 5 cut(s) 113, 190, 296, 449, 580
AsuII TTCGAA 2 cut(s) 673, 915
AvrII CCTAGG 1 cut(s) 250
BalI TGGCCA 1 cut(s) 1394
BanI GGYRCC 1 cut(s) 1523
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 1716
BbvCI CCTCAGC 1 cut(s) 1492
BbvI GCAGC 2 cut(s) 796, 1408
BccI CCATC 3 cut(s) 599, 801, 1679
BceAI ACGGC 1 cut(s) 841
BcgI CGANNNNNNTGC 2 cut(s) 1609, 1643
BciVI GTATCC 2 cut(s) 520, 543
BclI TGATCA 2 cut(s) 103, 609
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 9, 364, 737
BfaI CTAG 4 cut(s) 251, 819, 936, 1301
BfmI CTRYAG 3 cut(s) 1092, 1422, 1497
BfoI RGCGCY 1 cut(s) 1136
BfuI GTATCC 2 cut(s) 520, 543
BisI GCNGC 4 cut(s) 537, 785, 960, 1422
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 4 cut(s) 538, 786, 961, 1423
Bme1390I CCNGG 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 841
BmiI GGNNCC 1 cut(s) 1525
BmrFI CCNGG 1 cut(s) 514
BmsI GCATC 6 cut(s) 29, 177, 430, 500, 690, 1198
BpiI GAAGAC 1 cut(s) 567
Bpu10I CCTNAGC 2 cut(s) 30, 1492
Bpu14I TTCGAA 2 cut(s) 673, 915
BpuEI CTTGAG 4 cut(s) 167, 520, 623, 1700
BpuMI CCSGG 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 1083
BsaJI CCNNGG 6 cut(s) 126, 250, 433, 997, 1404, 1619
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 799, 936, 1386, 1441
Bse3DI GCAATG 1 cut(s) 1625
BseDI CCNNGG 6 cut(s) 126, 250, 433, 997, 1404, 1619
BseGI GGATG 5 cut(s) 192, 985, 1291, 1450, 1669
BseLI CCNNNNNNNGG 4 cut(s) 799, 936, 1386, 1441
BseMI GCAATG 1 cut(s) 1625
BseMII CTCAG 6 cut(s) 38, 44, 50, 359, 677, 1506
BseXI GCAGC 2 cut(s) 796, 1408
BseYI CCCAGC 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 729
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 43, 1394, 1624
BshNI GGYRCC 1 cut(s) 1523
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 1716
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 2 cut(s) 1094, 1282
BslI CCNNNNNNNGG 4 cut(s) 799, 936, 1386, 1441
BsmAI GTCTC 3 cut(s) 9, 364, 737
BsmFI GGGAC 2 cut(s) 1094, 1282
BsnI GGCC 3 cut(s) 43, 1394, 1624
Bsp119I TTCGAA 2 cut(s) 673, 915
Bsp1286I GDGCHC 1 cut(s) 1716
Bsp143I GATC 2 cut(s) 103, 609
Bsp19I CCATGG 2 cut(s) 433, 997
BspACI CCGC 2 cut(s) 537, 960
BspANI GGCC 3 cut(s) 43, 1394, 1624
BspCNI CTCAG 6 cut(s) 37, 43, 49, 360, 676, 1505
BspFNI CGCG 1 cut(s) 729
BspHI TCATGA 2 cut(s) 721, 1699
BspLI GGNNCC 1 cut(s) 1525
BspMAI CTGCAG 1 cut(s) 1426
BspQI GCTCTTC 1 cut(s) 1158
BspT104I TTCGAA 2 cut(s) 673, 915
BspT107I GGYRCC 1 cut(s) 1523
BsrDI GCAATG 1 cut(s) 1625
BssECI CCNNGG 6 cut(s) 126, 250, 433, 997, 1404, 1619
BssMI GATC 2 cut(s) 103, 609
BssNAI GTATAC 2 cut(s) 886, 1672
BssNI GRCGYC 1 cut(s) 1083
BssT1I CCWWGG 4 cut(s) 250, 433, 997, 1404
Bst1107I GTATAC 2 cut(s) 886, 1672
Bst4CI ACNGT 3 cut(s) 72, 1060, 1711
Bst6I CTCTTC 5 cut(s) 12, 168, 176, 567, 1158
BstACI GRCGYC 1 cut(s) 1083
BstAPI GCANNNNNTGC 1 cut(s) 1430
BstBI TTCGAA 2 cut(s) 673, 915
BstC8I GCNNGC 3 cut(s) 1170, 1227, 1318
BstDEI CTNAG 7 cut(s) 24, 30, 36, 368, 545, 663, 1492
BstDSI CCRYGG 3 cut(s) 126, 433, 997
BstENI CCTNNNNNAGG 1 cut(s) 934
BstF5I GGATG 5 cut(s) 192, 985, 1291, 1450, 1669
BstFNI CGCG 1 cut(s) 729
BstH2I RGCGCY 1 cut(s) 1136
BstHHI GCGC 1 cut(s) 1135
BstKTI GATC 2 cut(s) 106, 612
BstMAI GTCTC 3 cut(s) 9, 364, 737
BstMBI GATC 2 cut(s) 103, 609
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 26, 1211, 1430
BstNSI RCATGY 3 cut(s) 158, 1487, 1656
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 3 cut(s) 1092, 1422, 1497
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 796, 1408
BstV2I GAAGAC 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 96
BstZ17I GTATAC 2 cut(s) 886, 1672
BsuI GTATCC 2 cut(s) 520, 543
BsuRI GGCC 3 cut(s) 43, 1394, 1624
BtgI CCRYGG 3 cut(s) 126, 433, 997
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 5 cut(s) 192, 985, 1291, 1450, 1669
BtsIMutI CAGTG 1 cut(s) 912
Cac8I GCNNGC 3 cut(s) 1170, 1227, 1318
CciI TCATGA 2 cut(s) 721, 1699
CfoI GCGC 1 cut(s) 1135
CseI GACGC 1 cut(s) 1580
Csp6I GTAC 4 cut(s) 259, 460, 910, 1678
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviQI GTAC 4 cut(s) 259, 460, 910, 1678
DdeI CTNAG 7 cut(s) 24, 30, 36, 368, 545, 663, 1492
DpnI GATC 2 cut(s) 105, 611
DpnII GATC 2 cut(s) 103, 609
EaeI YGGCCR 1 cut(s) 1392
Eam1104I CTCTTC 5 cut(s) 12, 168, 176, 567, 1158
EarI CTCTTC 5 cut(s) 12, 168, 176, 567, 1158
Eco130I CCWWGG 4 cut(s) 250, 433, 997, 1404
Eco57I CTGAAG 1 cut(s) 1050
EcoNI CCTNNNNNAGG 1 cut(s) 934
EcoT14I CCWWGG 4 cut(s) 250, 433, 997, 1404
ErhI CCWWGG 4 cut(s) 250, 433, 997, 1404
FalI AAGNNNNNCTT 6 cut(s) 321, 353, 552, 584, 1152, 1184
FaqI GGGAC 2 cut(s) 1094, 1282
FbaI TGATCA 2 cut(s) 103, 609
FblI GTMKAC 2 cut(s) 885, 1671
Fnu4HI GCNGC 4 cut(s) 537, 785, 960, 1422
FokI GGATG 5 cut(s) 199, 992, 1298, 1457, 1676
Fsp4HI GCNGC 4 cut(s) 537, 785, 960, 1422
FspBI CTAG 4 cut(s) 251, 819, 936, 1301
GlaI GCGC 1 cut(s) 1134
GluI GCNGC 4 cut(s) 537, 785, 960, 1422
GsaI CCCAGC 1 cut(s) 898
HaeII RGCGCY 1 cut(s) 1136
HaeIII GGCC 3 cut(s) 43, 1394, 1624
HapII CCGG 1 cut(s) 513
HgaI GACGC 1 cut(s) 1580
HhaI GCGC 1 cut(s) 1135
Hin1I GRCGYC 1 cut(s) 1083
Hin6I GCGC 1 cut(s) 1133
HinP1I GCGC 1 cut(s) 1133
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 7 cut(s) 197, 429, 731, 745, 1376, 1437, 1592
HpaII CCGG 1 cut(s) 513
HphI GGTGA 5 cut(s) 113, 190, 296, 449, 580
Hpy166II GTNNAC 6 cut(s) 136, 259, 861, 886, 910, 1672
Hpy188I TCNGA 4 cut(s) 39, 161, 1041, 1620
Hpy188III TCNNGA 5 cut(s) 499, 602, 722, 751, 1700
Hpy8I GTNNAC 6 cut(s) 136, 259, 861, 886, 910, 1672
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 7 cut(s) 222, 461, 595, 823, 1172, 1390, 1573
HpyCH4III ACNGT 3 cut(s) 72, 1060, 1711
HpyCH4IV ACGT 3 cut(s) 840, 851, 1083
HpyCH4V TGCA 9 cut(s) 443, 761, 784, 951, 1172, 1189, 1261, 1424, 1652
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 1211, 1430
HpyF3I CTNAG 7 cut(s) 24, 30, 36, 368, 545, 663, 1492
HpySE526I ACGT 3 cut(s) 840, 851, 1083
Hsp92I GRCGYC 1 cut(s) 1083
HspAI GCGC 1 cut(s) 1133
Ksp22I TGATCA 2 cut(s) 103, 609
Kzo9I GATC 2 cut(s) 103, 609
LguI GCTCTTC 1 cut(s) 1158
Lsp1109I GCAGC 2 cut(s) 796, 1408
LweI GCATC 6 cut(s) 29, 177, 430, 500, 690, 1198
MaeI CTAG 4 cut(s) 251, 819, 936, 1301
MaeII ACGT 3 cut(s) 840, 851, 1083
MaeIII GTNAC 6 cut(s) 380, 874, 1101, 1486, 1568, 1688
MalI GATC 2 cut(s) 105, 611
MboI GATC 2 cut(s) 103, 609
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 1716
MlsI TGGCCA 1 cut(s) 1394
MluNI TGGCCA 1 cut(s) 1394
MlyI GAGTC 3 cut(s) 191, 739, 1431
MmeI TCCRAC 1 cut(s) 747
Mox20I TGGCCA 1 cut(s) 1394
MroXI GAANNNNTTC 1 cut(s) 1035
MscI TGGCCA 1 cut(s) 1394
MseI TTAA 7 cut(s) 63, 203, 486, 521, 623, 659, 1644
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 1394
MspA1I CMGCKG 1 cut(s) 1496
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 514
MunI CAATTG 1 cut(s) 221
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 3 cut(s) 26, 1211, 1430
NciI CCSGG 1 cut(s) 514
NcoI CCATGG 2 cut(s) 433, 997
NdeII GATC 2 cut(s) 103, 609
NlaIV GGNNCC 1 cut(s) 1525
NmuCI GTSAC 1 cut(s) 1568
NspI RCATGY 3 cut(s) 158, 1487, 1656
NspV TTCGAA 2 cut(s) 673, 915
PagI TCATGA 2 cut(s) 721, 1699
PciI ACATGT 2 cut(s) 154, 1483
PciSI GCTCTTC 1 cut(s) 1158
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 4 cut(s) 429, 731, 1376, 1592
PkrI GCNGC 4 cut(s) 538, 786, 961, 1423
PleI GAGTC 3 cut(s) 191, 739, 1431
PpsI GAGTC 3 cut(s) 191, 739, 1431
PscI ACATGT 2 cut(s) 154, 1483
PshBI ATTAAT 1 cut(s) 1644
PsiI TTATAA 1 cut(s) 1128
PspFI CCCAGC 1 cut(s) 894
PspN4I GGNNCC 1 cut(s) 1525
PstI CTGCAG 1 cut(s) 1426
PvuII CAGCTG 1 cut(s) 1496
RsaI GTAC 4 cut(s) 260, 461, 911, 1679
RsaNI GTAC 4 cut(s) 259, 460, 910, 1678
RseI CAYNNNNRTG 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 1158
SaqAI TTAA 7 cut(s) 63, 203, 486, 521, 623, 659, 1644
SatI GCNGC 4 cut(s) 537, 785, 960, 1422
Sau3AI GATC 2 cut(s) 103, 609
SchI GAGTC 3 cut(s) 191, 739, 1431
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 1 cut(s) 1716
SfaNI GCATC 6 cut(s) 29, 177, 430, 500, 690, 1198
SfcI CTRYAG 3 cut(s) 1092, 1422, 1497
SfuI TTCGAA 2 cut(s) 673, 915
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 4 cut(s) 146, 499, 602, 1715
SmoI CTYRAG 4 cut(s) 146, 499, 602, 1715
SsiI CCGC 2 cut(s) 537, 960
SspI AATATT 3 cut(s) 704, 926, 1363
SspMI CTAG 4 cut(s) 251, 819, 936, 1301
StyD4I CCNGG 1 cut(s) 512
StyI CCWWGG 4 cut(s) 250, 433, 997, 1404
TaaI ACNGT 3 cut(s) 72, 1060, 1711
TaiI ACGT 3 cut(s) 843, 854, 1086
TaqI TCGA 7 cut(s) 361, 673, 915, 1008, 1070, 1383, 1636
TatI WGTACW 3 cut(s) 258, 459, 909
TauI GCSGC 2 cut(s) 539, 962
TfiI GAWTC 4 cut(s) 429, 731, 1376, 1592
Tru1I TTAA 7 cut(s) 63, 203, 486, 521, 623, 659, 1644
Tru9I TTAA 7 cut(s) 63, 203, 486, 521, 623, 659, 1644
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 1 cut(s) 1568
TseI GCWGC 2 cut(s) 784, 1421
Tsp45I GTSAC 1 cut(s) 1568
TspDTI ATGAA 9 cut(s) 300, 381, 546, 738, 1130, 1232, 1302, 1526, 1605
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 912
VspI ATTAAT 1 cut(s) 1644
XagI CCTNNNNNAGG 1 cut(s) 934
XapI RAATTY 3 cut(s) 288, 300, 482
XceI RCATGY 3 cut(s) 158, 1487, 1656
XmaJI CCTAGG 1 cut(s) 250
XmiI GTMKAC 2 cut(s) 885, 1671
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 4 cut(s) 251, 819, 936, 1301
ZraI GACGTC 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.