RchiOBHm_Chr1g0326061

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000053
Physical Location & Seq
Forward (+)
14238991 .. 14242186
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55571

Sequence Viewer

Length: 1743 bp
ATGGATCAAGCACGAACAGCAAATGCCAGTAGCACTCTTGATGTTGATCGACGTTCAGCTAATTTTTCTCCCAGCATTTGGGGCGAGTATTTTCTGTCATATGCATCGATGGAAACTGCAGATATTGAATCCAACCAAAGTATCCAAGAACTGAAGGAAGAAGTGAAGAGGATGCTAGTGAGTTCTTTGTCTTTACAAAGATTACACTTGATTGATTACATTCAGCGCTTGGGGTTGTCCTACCATTTTGAGGATGAGATTTACCAACTTTTACATCAAATTTACAACCGGACCTGTTCTTCTTATGATGATGATGATGATGACGACGACGGCGACCTTCACACAGTTGCTCTCCGATTTCGGCTGCTTAGGCAACAAGGTTTTAAGGTTTCATGCAACATGTTCAACAAGTTCATCGATGTTGATGGGAAATTTAAGGAATCATGCGTTGCTGATGTAGTAGGATTGCTAAGTTTGTACGAAGCGACACATCTAAGGACACATGGAGATGATATATTAGATCGAGCACGGTCCTTCACCACCACTCATCTTGAGTTTGCAGTGGCAGAACACGGCCGTTTAAGCCCCCGCTTTCAAACAAGTAGCTCATGCCTTATATCAACCACTCTGGAAGGGAACCCAAGGATTGAAGCGAGGCATTACCTCTCTAGCTACCGGGAACTAAATACTTCACATTTTAGCGAAAGTCTTTTGACTTTTGCGAAGTTGGATTTCAATCAATTGCAGCGAATCCATCAAAAAGAACTAAGTCACATCACAAGGTGGTGGAAGGAGTTGGACTTTGTCAACAAACTACCTTTTGCAAGGGACAGAATAGTAGAGTGTTACTTTTGGTCTTTGGGAGTCTACTTTGAGCCCAAGTATCATTTTGGGAGGACAACATTATGCAAAGTTCTTGGCTTACTAACCATGATTGATGACACTTACGATACGTACGGCACACCTGAAGAACTAGAGCTCTTTACTGAAGCTATTGAGAGGTGGGATATCTCTGCCATGGATTCATTGCCTGACTATATGAAAGTTTGCTATGGGGCATTGTTGAATGTCTACACTGAAATTAAAGATGAGCTTGCAAAGGAGGGAAACTCGTATCGCATCAACTATGCAATAGAAGCAGTAAGCCTCATAAGGTCTCAGCGAGAGCTGACTGATTTAGTGTTTTATGGTTTATGGGAGCCATGTGGATCTTACTTAGAGGAAGCCAAATGGTTCCACCAAAAGTACACACCGAAAACCTTTGATGAGTATATGTCGGTGGCACTTGTATCATCCGGCATGTTTACGGTGGAAGCAACATTTATCGTTGCAATAGCTGGTGATATTGTTACAAGAGATTCCTTGGACTGGTTGTTCAGTGATCCTAAATTTGTAAAGGCTTCATCGATAATTGGGAGACTCTTGAATGACATCCGAAGCCACAAGCTTGAGCAAAAGAGAGGACATGTTGTCTCAGCTGTGGAATGCTATATGAAAGAACACTGTGCTACAGAAGAAGTAGCGGTGATTGAACTGACTAAACATGTAAATGATGCATGGGCGGATGTAAACGAAGGATTGCTTCACCCTATCGCTACTGTCCCTAGGCCACTACTATTGCTAATTCTCAATTTTCTACGCGTAACTGATGTTATATACAAGCGTGAAGATGGTTATACTCATGGTGGAGTTGCGCTCAAGGATTATATAACTTCTCTTCTTGTCGAACATGTTCCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

580

Amino Acids

66.9

Weight (kDa)

5.22

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 26 - 191 3.8e-55 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 264 - 381 6.5e-49 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 304 - 522 5.7e-48 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 402 - 522 1.2e-38 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 2 cut(s) 867, 1071
AccII CGCG 1 cut(s) 1641
AciI CCGC 3 cut(s) 589, 1523, 1562
AclWI GGATC 3 cut(s) 12, 1216, 1376
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 3 cut(s) 279, 431, 1388
AcuI CTGAAG 3 cut(s) 173, 987, 1008
AdeI CACNNNGTG 1 cut(s) 783
AfaI GTAC 3 cut(s) 479, 956, 1247
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 78, 250, 1368
AflIII ACRYGT 5 cut(s) 399, 1465, 1543, 1639, 1729
AgsI TTSAA 8 cut(s) 128, 406, 596, 650, 736, 1066, 1426, 1532
AhdI GACNNNNNGTC 1 cut(s) 1469
AloI GAACNNNNNNTCC 2 cut(s) 1358, 1390
Alw21I GWGCWC 2 cut(s) 529, 981
Alw26I GTCTC 3 cut(s) 1161, 1411, 1477
AlwI GGATC 3 cut(s) 12, 1216, 1376
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 2 cut(s) 574, 1607
ApeKI GCWGC 2 cut(s) 364, 745
ApoI RAATTY 3 cut(s) 279, 431, 1388
Asp700I GAANNNNTTC 1 cut(s) 1731
AspA2I CCTAGG 1 cut(s) 1604
AspLEI GCGC 2 cut(s) 228, 1696
AspS9I GGNCC 2 cut(s) 291, 531
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 4 cut(s) 529, 1352, 1537, 1577
AvaII GGWCC 2 cut(s) 291, 531
AvrII CCTAGG 1 cut(s) 1604
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BanII GRGCYC 2 cut(s) 879, 981
Bbv12I GWGCWC 2 cut(s) 529, 981
BbvI GCAGC 2 cut(s) 351, 757
BccI CCATC 4 cut(s) 103, 419, 762, 1664
BceAI ACGGC 4 cut(s) 346, 561, 589, 973
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 3 cut(s) 1161, 1411, 1477
BfaI CTAG 4 cut(s) 176, 669, 974, 1605
BfmI CTRYAG 2 cut(s) 117, 1509
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 2 cut(s) 365, 746
BlnI CCTAGG 1 cut(s) 1604
BlsI GCNGC 2 cut(s) 366, 747
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 2 cut(s) 291, 531
BmeRI GACNNNNNGTC 1 cut(s) 1469
BmgT120I GGNCC 2 cut(s) 291, 531
BmiI GGNNCC 3 cut(s) 638, 1200, 1235
BmrFI CCNGG 1 cut(s) 677
BmsI GCATC 4 cut(s) 113, 162, 1128, 1543
BplI GAGNNNNNCTC 4 cut(s) 1094, 1126, 1680, 1712
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 3 cut(s) 572, 1469, 1682
BpuMI CCSGG 1 cut(s) 677
Bsa29I ATCGAT 3 cut(s) 107, 417, 1406
BsaAI YACGTR 1 cut(s) 954
BsaBI GATNNNNATC 2 cut(s) 45, 735
BsaI GGTCTC 1 cut(s) 1161
BsaJI CCNNGG 4 cut(s) 641, 1017, 1362, 1604
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 250, 1368
Bse1I ACTGG 2 cut(s) 27, 1373
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 2 cut(s) 45, 735
BseCI ATCGAT 3 cut(s) 107, 417, 1406
BseDI CCNNGG 4 cut(s) 641, 1017, 1362, 1604
BseGI GGATG 5 cut(s) 177, 259, 1292, 1431, 1570
BseJI GATNNNNATC 2 cut(s) 45, 735
BseLI CCNNNNNNNGG 3 cut(s) 78, 250, 1368
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 2 cut(s) 1172, 1488
BseNI ACTGG 2 cut(s) 27, 1373
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 351, 757
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 1641
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 576, 1609
BshVI ATCGAT 3 cut(s) 107, 417, 1406
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 529, 981
BsiSI CCGG 3 cut(s) 289, 676, 1296
BsiWI CGTACG 1 cut(s) 954
BslFI GGGAC 2 cut(s) 842, 1586
BslI CCNNNNNNNGG 3 cut(s) 78, 250, 1368
BsmAI GTCTC 3 cut(s) 1161, 1411, 1477
BsmFI GGGAC 2 cut(s) 842, 1586
BsmI GAATGC 1 cut(s) 1490
BsnI GGCC 2 cut(s) 576, 1609
Bso31I GGTCTC 1 cut(s) 1161
Bsp1286I GDGCHC 3 cut(s) 529, 879, 981
Bsp143I GATC 5 cut(s) 4, 46, 520, 1208, 1381
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 3 cut(s) 589, 1523, 1562
BspANI GGCC 2 cut(s) 576, 1609
BspCNI CTCAG 2 cut(s) 1171, 1487
BspDI ATCGAT 3 cut(s) 107, 417, 1406
BspFNI CGCG 1 cut(s) 1641
BspLI GGNNCC 3 cut(s) 638, 1200, 1235
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 3 cut(s) 12, 1216, 1376
BspTNI GGTCTC 1 cut(s) 1161
BsrDI GCAATG 1 cut(s) 1025
BsrI ACTGG 2 cut(s) 27, 1373
BssECI CCNNGG 4 cut(s) 641, 1017, 1362, 1604
BssMI GATC 5 cut(s) 4, 46, 520, 1208, 1381
BssT1I CCWWGG 4 cut(s) 641, 1017, 1362, 1604
Bst4CI ACNGT 5 cut(s) 346, 531, 1309, 1505, 1600
Bst6I CTCTTC 2 cut(s) 161, 1722
BstBAI YACGTR 1 cut(s) 954
BstC8I GCNNGC 1 cut(s) 1095
BstDEI CTNAG 7 cut(s) 368, 470, 494, 767, 1158, 1216, 1474
BstDSI CCRYGG 1 cut(s) 1017
BstF5I GGATG 5 cut(s) 177, 259, 1292, 1431, 1570
BstFNI CGCG 1 cut(s) 1641
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 1696
BstKTI GATC 5 cut(s) 7, 49, 523, 1211, 1384
BstMAI GTCTC 3 cut(s) 1161, 1411, 1477
BstMBI GATC 5 cut(s) 4, 46, 520, 1208, 1381
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 5 cut(s) 17, 81, 370, 582, 1136
BstNSI RCATGY 5 cut(s) 403, 1303, 1469, 1547, 1733
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 2 cut(s) 117, 1509
BstSNI TACGTA 1 cut(s) 954
BstUI CGCG 1 cut(s) 1641
BstV1I GCAGC 2 cut(s) 351, 757
BstX2I RGATCY 1 cut(s) 1208
BstYI RGATCY 1 cut(s) 1208
BstZI CGGCCG 1 cut(s) 574
Bsu15I ATCGAT 3 cut(s) 107, 417, 1406
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 576, 1609
BsuTUI ATCGAT 3 cut(s) 107, 417, 1406
BtgI CCRYGG 1 cut(s) 1017
BtsCI GGATG 5 cut(s) 177, 259, 1292, 1431, 1570
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 4 cut(s) 567, 1074, 1384, 1501
Cac8I GCNNGC 1 cut(s) 1095
CfoI GCGC 2 cut(s) 228, 1696
Cfr13I GGNCC 2 cut(s) 291, 531
ClaI ATCGAT 3 cut(s) 107, 417, 1406
Csp6I GTAC 3 cut(s) 478, 955, 1246
CspCI CAANNNNNGTGG 4 cut(s) 532, 567, 1599, 1634
CviQI GTAC 3 cut(s) 478, 955, 1246
DdeI CTNAG 7 cut(s) 368, 470, 494, 767, 1158, 1216, 1474
DpnI GATC 5 cut(s) 6, 48, 522, 1210, 1383
DpnII GATC 5 cut(s) 4, 46, 520, 1208, 1381
DraIII CACNNNGTG 1 cut(s) 783
DriI GACNNNNNGTC 1 cut(s) 1469
EaeI YGGCCR 1 cut(s) 574
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 161, 1722
Eam1105I GACNNNNNGTC 1 cut(s) 1469
EarI CTCTTC 2 cut(s) 161, 1722
EciI GGCGGA 1 cut(s) 1577
Ecl136II GAGCTC 1 cut(s) 979
EclXI CGGCCG 1 cut(s) 574
Eco105I TACGTA 1 cut(s) 954
Eco130I CCWWGG 4 cut(s) 641, 1017, 1362, 1604
Eco24I GRGCYC 2 cut(s) 879, 981
Eco31I GGTCTC 1 cut(s) 1161
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 2 cut(s) 291, 531
Eco47III AGCGCT 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 574
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 3 cut(s) 173, 987, 1008
EcoICRI GAGCTC 1 cut(s) 979
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 4 cut(s) 641, 1017, 1362, 1604
EcoT22I ATGCAT 2 cut(s) 106, 1558
EcoT38I GRGCYC 2 cut(s) 879, 981
ErhI CCWWGG 4 cut(s) 641, 1017, 1362, 1604
FalI AAGNNNNNCTT 4 cut(s) 1077, 1109, 1566, 1598
FaqI GGGAC 2 cut(s) 842, 1586
FauI CCCGC 1 cut(s) 596
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 2 cut(s) 867, 1071
Fnu4HI GCNGC 2 cut(s) 365, 746
FokI GGATG 5 cut(s) 184, 266, 1279, 1418, 1577
FriOI GRGCYC 2 cut(s) 879, 981
Fsp4HI GCNGC 2 cut(s) 365, 746
FspBI CTAG 4 cut(s) 176, 669, 974, 1605
GlaI GCGC 2 cut(s) 227, 1695
GluI GCNGC 2 cut(s) 365, 746
GsaI CCCAGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 576, 1609
HapII CCGG 3 cut(s) 289, 676, 1296
HhaI GCGC 2 cut(s) 228, 1696
Hin6I GCGC 2 cut(s) 226, 1694
HinP1I GCGC 2 cut(s) 226, 1694
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 1445
HinfI GANTC 7 cut(s) 128, 440, 750, 864, 1022, 1358, 1419
HpaII CCGG 3 cut(s) 289, 676, 1296
HphI GGTGA 4 cut(s) 529, 1352, 1537, 1577
Hpy166II GTNNAC 6 cut(s) 808, 868, 1072, 1248, 1305, 1570
Hpy188I TCNGA 2 cut(s) 356, 1436
Hpy188III TCNNGA 4 cut(s) 38, 551, 629, 1423
Hpy8I GTNNAC 6 cut(s) 808, 868, 1072, 1248, 1305, 1570
Hpy99I CGWCG 3 cut(s) 54, 329, 332
HpyAV CCTTC 6 cut(s) 148, 347, 544, 626, 784, 1568
HpyCH4III ACNGT 5 cut(s) 346, 531, 1309, 1505, 1600
HpyCH4IV ACGT 2 cut(s) 52, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 81, 370, 582, 1136
HpyF3I CTNAG 7 cut(s) 368, 470, 494, 767, 1158, 1216, 1474
HpySE526I ACGT 2 cut(s) 52, 953
HspAI GCGC 2 cut(s) 226, 1694
Kzo9I GATC 5 cut(s) 4, 46, 520, 1208, 1381
LmnI GCTCC 1 cut(s) 1198
Lsp1109I GCAGC 2 cut(s) 351, 757
LweI GCATC 4 cut(s) 113, 162, 1128, 1543
MaeI CTAG 4 cut(s) 176, 669, 974, 1605
MaeII ACGT 2 cut(s) 52, 953
MaeIII GTNAC 4 cut(s) 770, 845, 1348, 1642
MalI GATC 5 cut(s) 6, 48, 522, 1210, 1383
MboI GATC 5 cut(s) 4, 46, 520, 1208, 1381
MboII GAAGA 7 cut(s) 170, 178, 291, 980, 1526, 1679, 1709
MfeI CAATTG 1 cut(s) 740
MflI RGATCY 1 cut(s) 1208
MhlI GDGCHC 3 cut(s) 529, 879, 981
MluCI AATT 9 cut(s) 61, 279, 431, 740, 1080, 1388, 1410, 1623, 1630
MluI ACGCGT 1 cut(s) 1639
MlyI GAGTC 2 cut(s) 873, 1413
MmeI TCCRAC 3 cut(s) 156, 708, 777
Mph1103I ATGCAT 2 cut(s) 106, 1558
MroXI GAANNNNTTC 1 cut(s) 1731
MseI TTAA 4 cut(s) 384, 435, 581, 1083
MslI CAYNNNNRTG 2 cut(s) 507, 1548
MspA1I CMGCKG 1 cut(s) 1478
MspI CCGG 3 cut(s) 289, 676, 1296
MspR9I CCNGG 1 cut(s) 677
MunI CAATTG 1 cut(s) 740
Mva1269I GAATGC 1 cut(s) 1490
MvnI CGCG 1 cut(s) 1641
MwoI GCNNNNNNNGC 5 cut(s) 17, 81, 370, 582, 1136
NciI CCSGG 1 cut(s) 677
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 1 cut(s) 100
NdeII GATC 5 cut(s) 4, 46, 520, 1208, 1381
NlaIV GGNNCC 3 cut(s) 638, 1200, 1235
NmuCI GTSAC 1 cut(s) 770
NsiI ATGCAT 2 cut(s) 106, 1558
NspI RCATGY 5 cut(s) 403, 1303, 1469, 1547, 1733
PciI ACATGT 4 cut(s) 399, 1465, 1543, 1729
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 1490
PdmI GAANNNNTTC 1 cut(s) 1731
PfeI GAWTC 5 cut(s) 128, 440, 750, 1022, 1358
Pfl23II CGTACG 1 cut(s) 954
PflFI GACNNNGTC 1 cut(s) 803
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 2 cut(s) 366, 747
PleI GAGTC 2 cut(s) 872, 1413
PpsI GAGTC 2 cut(s) 872, 1413
Ppu21I YACGTR 1 cut(s) 954
PscI ACATGT 4 cut(s) 399, 1465, 1543, 1729
Psp124BI GAGCTC 1 cut(s) 981
PspFI CCCAGC 1 cut(s) 71
PspLI CGTACG 1 cut(s) 954
PspN4I GGNNCC 3 cut(s) 638, 1200, 1235
PspPI GGNCC 2 cut(s) 291, 531
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 1208
PsyI GACNNNGTC 1 cut(s) 803
PvuII CAGCTG 1 cut(s) 1478
RsaI GTAC 3 cut(s) 479, 956, 1247
RsaNI GTAC 3 cut(s) 478, 955, 1246
RseI CAYNNNNRTG 2 cut(s) 507, 1548
SacI GAGCTC 1 cut(s) 981
SaqAI TTAA 4 cut(s) 384, 435, 581, 1083
SatI GCNGC 2 cut(s) 365, 746
Sau3AI GATC 5 cut(s) 4, 46, 520, 1208, 1381
Sau96I GGNCC 2 cut(s) 291, 531
SchI GAGTC 2 cut(s) 873, 1413
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 3 cut(s) 529, 879, 981
SfaNI GCATC 4 cut(s) 113, 162, 1128, 1543
SfcI CTRYAG 2 cut(s) 117, 1509
SinI GGWCC 2 cut(s) 291, 531
SmiMI CAYNNNNRTG 2 cut(s) 507, 1548
SmlI CTYRAG 3 cut(s) 551, 1448, 1697
SmoI CTYRAG 3 cut(s) 551, 1448, 1697
SnaBI TACGTA 1 cut(s) 954
Sse9I AATT 9 cut(s) 61, 279, 431, 740, 1080, 1388, 1410, 1623, 1630
SsiI CCGC 3 cut(s) 589, 1523, 1562
SspMI CTAG 4 cut(s) 176, 669, 974, 1605
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 4 cut(s) 641, 1017, 1362, 1604
TaaI ACNGT 5 cut(s) 346, 531, 1309, 1505, 1600
TaiI ACGT 2 cut(s) 55, 956
TaqI TCGA 6 cut(s) 49, 107, 417, 523, 1406, 1725
TasI AATT 9 cut(s) 61, 279, 431, 740, 1080, 1388, 1410, 1623, 1630
TatI WGTACW 1 cut(s) 1245
TfiI GAWTC 5 cut(s) 128, 440, 750, 1022, 1358
Tru1I TTAA 4 cut(s) 384, 435, 581, 1083
Tru9I TTAA 4 cut(s) 384, 435, 581, 1083
TscAI CASTG 4 cut(s) 567, 1081, 1384, 1508
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 2 cut(s) 364, 745
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 6 cut(s) 381, 403, 1014, 1055, 1392, 1508
TspRI CASTG 4 cut(s) 567, 1081, 1384, 1508
Tth111I GACNNNGTC 1 cut(s) 803
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 291, 531
XapI RAATTY 3 cut(s) 279, 431, 1388
XceI RCATGY 5 cut(s) 403, 1303, 1469, 1547, 1733
XmaJI CCTAGG 1 cut(s) 1604
XmiI GTMKAC 2 cut(s) 867, 1071
XmnI GAANNNNTTC 1 cut(s) 1731
XspI CTAG 4 cut(s) 176, 669, 974, 1605
Zsp2I ATGCAT 2 cut(s) 106, 1558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.