Rh7CG283600

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000053
Physical Location & Seq
Reverse (-)
28844607 .. 28849673
5067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG283600.1

Sequence Viewer

Length: 1485 bp
ATGCGTAGCTATTCGGCTATTCCATGCATTATAAATAGCAAGGCAGCTCTTTTCATCAACTCAAGCAAGCCATTCATTCCTGTACGTAATGATAAAATGTCCTTCCAAGTTTTAGCTTCTCAAGCTCAAGCGCGAGATACAGTTGCTGATGTTAAGCGACATTCAGCTAATAATTATACCCCAAACATTTGGGGTGATCATTTTCTCTATTATGCTACCACGGAAGTTGACATTAAACTTGAGCAACACGTCCGAGAACTAAAAGATCAGGTGAAGAGGATGCTAATGGATCCCGTTAAAAAACCTTCACAACAATTGGACTTGGTTGATAACATTCAACGCCTAGGTGTGTCCTATCATTTTGAAAATGAGATTGATGGAATTTTGAAACAAATTCACCACAACTACTCAAATGGTAGTGATGATGACCTTTACACTACTGCTCTCATTTTTCGGCTACTTAGACAACAAGGTTATAGCGTTTCATGCGATATGTTCAACAAATTCAGGGAAGGAAATGATCAGAAATTCAAGGCATCTCTTCTGAGTGATGTATCAGGACTATTAAGCTTGTACGAAGCCACCCATCTTAGGATACGTGGAGAAGACCTACTTGAAGAGGCACTAGACTTCACCACCACTCATCTTGAGTCGATCAAACACAGTTTAAGCCCTTCACTTTCAAAACAAGTAGTCCATTCCTTAAATCAGGCACTTCGGAGGGGCATCCCGAGGGTGGAAGCAAGATATTACTTGTCAATCTACACAGAACACGATTCACATAATGAAACTCTCCTGACTTTTGCAAAGTTAGATTTCAACCTACTGCAACAAGTCCATCAAAAGGAACTATGTGAAATTACAAGGTGGTGGAAGGACTTGGACGTCACAAACAAGCTGCCGTTCACAAGAGACAGAATTACCGAAATTTACTTCATTTGGACTTTGTCAGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACAACATGCAAAGTCACTGCCATGATGGCTATCCTCGATGACATTTATGATACACGTGGCACACTCGAAGAACTAGAGCTCTTTACTGAAGTTATTCACAGGTGGGATATCTGTGCCATAGATCCATTGCCAAATTATATGAAAGTCTGTTATAAGGCATTGTTAGAAGTTTATACTGAAATTGAAGAAGAGCTTGCAAAGGAGGGAAAGTTGTATCGAATCCATTATGCCAGAGAAGCTATGAAAAAACAAGCTGAAGTTTACTTCCTTGAAGCTAAATGGCTGCACCACCAATACATACCAACGATGGATGAATATATGGCCCTATCATTATTGACCTCAGGCTACCCTCAACTAATAACAACATCTTTTGTTGCAATGGGAGATGTTGCTACACAAGACTCCTTCGATTGGTTGGACACTTATCCCAGGGCTGTAAAAGGGGCTGCAGTAGTTGCTCGACTCATGGATGATATAGCGGACCACAAGAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

494

Amino Acids

57.5

Weight (kDa)

5.92

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 63 - 235 7e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 292 - 492 1.1e-74 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 333 - 493 2e-41 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 32, 1140
AasI GACNNNNNNGTC 1 cut(s) 884
AatII GACGTC 1 cut(s) 888
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 1466
AclWI GGATC 3 cut(s) 284, 297, 1103
AcsI RAATTY 5 cut(s) 381, 393, 503, 527, 927
AcuI CTGAAG 2 cut(s) 1095, 1263
AcvI CACGTG 1 cut(s) 1043
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 3 cut(s) 84, 575, 956
AfiI CCNNNNNNNGG 5 cut(s) 591, 736, 844, 981, 1398
AflIII ACRYGT 2 cut(s) 247, 1040
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 1415
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 1 cut(s) 906
AlwI GGATC 3 cut(s) 284, 297, 1103
AlwNI CAGNNNCTG 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 730
AoxI GGCC 1 cut(s) 1308
ApeKI GCWGC 4 cut(s) 44, 898, 1270, 1433
ApoI RAATTY 5 cut(s) 381, 393, 503, 527, 927
Asp700I GAANNNNTTC 1 cut(s) 1080
AspA2I CCTAGG 1 cut(s) 343
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 1309, 1468
AsuHPI GGTGA 4 cut(s) 206, 283, 389, 625
AsuII TTCGAA 1 cut(s) 960
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 1 cut(s) 1468
AvrII CCTAGG 1 cut(s) 343
AxyI CCTNAGG 1 cut(s) 1327
BamHI GGATCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 1068
BbrPI CACGTG 1 cut(s) 1043
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 4 cut(s) 56, 885, 1257, 1420
BccI CCATC 5 cut(s) 371, 594, 846, 1006, 1288
BceAI ACGGC 1 cut(s) 886
BciT130I CCWGG 1 cut(s) 1417
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 2 cut(s) 196, 520
BcoDI GTCTC 1 cut(s) 906
BfaI CTAG 4 cut(s) 344, 626, 981, 1061
BfmI CTRYAG 1 cut(s) 1434
BfuI GTATCC 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 1013
BisI GCNGC 4 cut(s) 45, 899, 1271, 1434
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 4 cut(s) 46, 900, 1272, 1435
Bme1390I CCNGG 1 cut(s) 1417
Bme18I GGWCC 1 cut(s) 1468
BmeT110I CYCGRG 1 cut(s) 730
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 1309, 1468
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 1417
BmsI GCATC 3 cut(s) 270, 545, 735
BpiI GAAGAC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 960
BpuEI CTTGAG 5 cut(s) 46, 105, 111, 260, 668
BsaAI YACGTR 3 cut(s) 86, 599, 1043
BsaBI GATNNNNATC 1 cut(s) 1016
BsaHI GRCGYC 1 cut(s) 885
BsaJI CCNNGG 5 cut(s) 219, 343, 731, 1415, 1416
BsaXI ACNNNNNCTCC 2 cut(s) 1181, 1211
Bsc4I CCNNNNNNNGG 5 cut(s) 591, 736, 844, 981, 1398
Bse21I CCTNAGG 1 cut(s) 1327
Bse3DI GCAATG 2 cut(s) 1112, 1371
Bse8I GATNNNNATC 1 cut(s) 1016
BseBI CCWGG 1 cut(s) 1417
BseDI CCNNGG 5 cut(s) 219, 343, 731, 1415, 1416
BseGI GGATG 4 cut(s) 285, 726, 1303, 1462
BseJI GATNNNNATC 1 cut(s) 1016
BseLI CCNNNNNNNGG 5 cut(s) 591, 736, 844, 981, 1398
BseMI GCAATG 2 cut(s) 1112, 1371
BseMII CTCAG 2 cut(s) 536, 1341
BseXI GCAGC 4 cut(s) 56, 885, 1257, 1420
BsgI GTGCAG 1 cut(s) 1256
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 1310
BsiHKAI GWGCWC 1 cut(s) 1068
BsiHKCI CYCGRG 1 cut(s) 730
BslI CCNNNNNNNGG 5 cut(s) 591, 736, 844, 981, 1398
BsmAI GTCTC 1 cut(s) 906
BsnI GGCC 1 cut(s) 1310
BsoBI CYCGRG 1 cut(s) 730
Bsp119I TTCGAA 1 cut(s) 960
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
BspACI CCGC 1 cut(s) 1466
BspANI GGCC 1 cut(s) 1310
BspCNI CTCAG 2 cut(s) 537, 1340
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 291
BspMAI CTGCAG 1 cut(s) 1438
BspPI GGATC 3 cut(s) 284, 297, 1103
BspQI GCTCTTC 1 cut(s) 1170
BspT104I TTCGAA 1 cut(s) 960
BsrDI GCAATG 2 cut(s) 1112, 1371
BssECI CCNNGG 5 cut(s) 219, 343, 731, 1415, 1416
BssMI GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
BssNI GRCGYC 1 cut(s) 885
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 1417
Bst4CI ACNGT 2 cut(s) 142, 665
Bst6I CTCTTC 4 cut(s) 269, 546, 612, 1170
BstACI GRCGYC 1 cut(s) 885
BstAPI GCANNNNNTGC 1 cut(s) 1442
BstBAI YACGTR 3 cut(s) 86, 599, 1043
BstBI TTCGAA 1 cut(s) 960
BstC8I GCNNGC 2 cut(s) 68, 1182
BstDEI CTNAG 4 cut(s) 461, 545, 590, 1327
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 979
BstF5I GGATG 4 cut(s) 285, 726, 1303, 1462
BstFNI CGCG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 6 cut(s) 199, 268, 292, 523, 657, 1111
BstMAI GTCTC 1 cut(s) 906
BstMBI GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
BstMWI GCNNNNNNNGC 5 cut(s) 122, 486, 1013, 1223, 1442
BstNI CCWGG 1 cut(s) 1417
BstNSI RCATGY 1 cut(s) 996
BstSCI CCNGG 1 cut(s) 1415
BstSFI CTRYAG 1 cut(s) 1434
BstSNI TACGTA 1 cut(s) 86
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 4 cut(s) 56, 885, 1257, 1420
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 2 cut(s) 289, 1108
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 2 cut(s) 289, 1108
Bsu36I CCTNAGG 1 cut(s) 1327
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 1 cut(s) 1310
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 4 cut(s) 285, 726, 1303, 1462
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 2 cut(s) 957, 1002
Cac8I GCNNGC 2 cut(s) 68, 1182
CaiI CAGNNNCTG 1 cut(s) 146
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 1309, 1468
Csp6I GTAC 3 cut(s) 83, 574, 955
CspCI CAANNNNNGTGG 4 cut(s) 208, 243, 628, 663
CviAII CATG 5 cut(s) 24, 486, 993, 1009, 1453
CviQI GTAC 3 cut(s) 83, 574, 955
DdeI CTNAG 4 cut(s) 461, 545, 590, 1327
DpnI GATC 6 cut(s) 198, 267, 291, 522, 656, 1110
DpnII GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
Eam1104I CTCTTC 4 cut(s) 269, 546, 612, 1170
EarI CTCTTC 4 cut(s) 269, 546, 612, 1170
Ecl136II GAGCTC 1 cut(s) 1066
Eco105I TACGTA 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 1068
Eco32I GATATC 1 cut(s) 1096
Eco47I GGWCC 1 cut(s) 1468
Eco53kI GAGCTC 1 cut(s) 1066
Eco57I CTGAAG 2 cut(s) 1095, 1263
Eco72I CACGTG 1 cut(s) 1043
Eco81I CCTNAGG 1 cut(s) 1327
Eco88I CYCGRG 1 cut(s) 730
EcoICRI GAGCTC 1 cut(s) 1066
EcoNI CCTNNNNNAGG 1 cut(s) 979
EcoRII CCWGG 1 cut(s) 1415
EcoRV GATATC 1 cut(s) 1096
EcoT14I CCWWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 1068
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 5 cut(s) 27, 489, 996, 1012, 1456
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 1164, 1196
FatI CATG 5 cut(s) 23, 485, 992, 1008, 1452
FbaI TGATCA 2 cut(s) 196, 520
Fnu4HI GCNGC 4 cut(s) 45, 899, 1271, 1434
FokI GGATG 4 cut(s) 292, 713, 1310, 1469
FriOI GRGCYC 1 cut(s) 1068
Fsp4HI GCNGC 4 cut(s) 45, 899, 1271, 1434
FspBI CTAG 4 cut(s) 344, 626, 981, 1061
GlaI GCGC 1 cut(s) 132
GluI GCNGC 4 cut(s) 45, 899, 1271, 1434
HaeIII GGCC 1 cut(s) 1310
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 885
Hin1II CATG 5 cut(s) 27, 489, 996, 1012, 1456
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 5 cut(s) 650, 776, 1206, 1388, 1449
HphI GGTGA 4 cut(s) 206, 283, 389, 625
Hpy166II GTNNAC 4 cut(s) 229, 906, 955, 1249
Hpy188I TCNGA 4 cut(s) 254, 525, 546, 720
Hpy188III TCNNGA 4 cut(s) 558, 647, 730, 796
Hpy8I GTNNAC 4 cut(s) 229, 906, 955, 1249
HpyAV CCTTC 6 cut(s) 112, 315, 506, 684, 868, 1402
HpyCH4III ACNGT 2 cut(s) 142, 665
HpyCH4IV ACGT 5 cut(s) 85, 249, 598, 885, 1042
HpyCH4V TGCA 8 cut(s) 27, 806, 829, 996, 1184, 1273, 1364, 1436
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 486, 1013, 1223, 1442
HpyF3I CTNAG 4 cut(s) 461, 545, 590, 1327
HpySE526I ACGT 5 cut(s) 85, 249, 598, 885, 1042
Hsp92I GRCGYC 1 cut(s) 885
Hsp92II CATG 5 cut(s) 27, 489, 996, 1012, 1456
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 2 cut(s) 196, 520
Kzo9I GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
LguI GCTCTTC 1 cut(s) 1170
Lsp1109I GCAGC 4 cut(s) 56, 885, 1257, 1420
LweI GCATC 3 cut(s) 270, 545, 735
MaeI CTAG 4 cut(s) 344, 626, 981, 1061
MaeII ACGT 5 cut(s) 85, 249, 598, 885, 1042
MaeIII GTNAC 2 cut(s) 886, 1000
MalI GATC 6 cut(s) 198, 267, 291, 522, 656, 1110
MboI GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
MboII GAAGA 7 cut(s) 286, 533, 617, 629, 1067, 1184, 1187
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 2 cut(s) 289, 1108
MhlI GDGCHC 1 cut(s) 1068
MlyI GAGTC 3 cut(s) 659, 1382, 1443
MmeI TCCRAC 1 cut(s) 1383
Mph1103I ATGCAT 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 1080
MseI TTAA 6 cut(s) 153, 234, 297, 566, 668, 704
MslI CAYNNNNRTG 1 cut(s) 1007
MspR9I CCNGG 1 cut(s) 1417
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 1417
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 5 cut(s) 122, 486, 1013, 1223, 1442
NdeII GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
NlaIII CATG 5 cut(s) 27, 489, 996, 1012, 1456
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 2 cut(s) 886, 1000
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 996
NspV TTCGAA 1 cut(s) 960
PasI CCCWGGG 1 cut(s) 1416
PciSI GCTCTTC 1 cut(s) 1170
PdmI GAANNNNTTC 1 cut(s) 1080
PfeI GAWTC 2 cut(s) 776, 1206
PflFI GACNNNGTC 1 cut(s) 946
PkrI GCNGC 4 cut(s) 46, 900, 1272, 1435
PleI GAGTC 3 cut(s) 658, 1382, 1443
PmaCI CACGTG 1 cut(s) 1043
PmlI CACGTG 1 cut(s) 1043
PpsI GAGTC 3 cut(s) 658, 1382, 1443
Ppu21I YACGTR 3 cut(s) 86, 599, 1043
PsiI TTATAA 2 cut(s) 32, 1140
Psp124BI GAGCTC 1 cut(s) 1068
Psp6I CCWGG 1 cut(s) 1415
PspCI CACGTG 1 cut(s) 1043
PspGI CCWGG 1 cut(s) 1415
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 1309, 1468
PstI CTGCAG 1 cut(s) 1438
PstNI CAGNNNCTG 1 cut(s) 146
PsuI RGATCY 2 cut(s) 289, 1108
PsyI GACNNNGTC 1 cut(s) 946
RsaI GTAC 3 cut(s) 84, 575, 956
RsaNI GTAC 3 cut(s) 83, 574, 955
RseI CAYNNNNRTG 1 cut(s) 1007
SacI GAGCTC 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 1170
SaqAI TTAA 6 cut(s) 153, 234, 297, 566, 668, 704
SatI GCNGC 4 cut(s) 45, 899, 1271, 1434
Sau3AI GATC 6 cut(s) 196, 265, 289, 520, 654, 1108
Sau96I GGNCC 2 cut(s) 1309, 1468
SchI GAGTC 3 cut(s) 659, 1382, 1443
ScrFI CCNGG 1 cut(s) 1417
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 3 cut(s) 270, 545, 735
SfcI CTRYAG 1 cut(s) 1434
SfuI TTCGAA 1 cut(s) 960
SinI GGWCC 1 cut(s) 1468
SmiMI CAYNNNNRTG 1 cut(s) 1007
SmlI CTYRAG 5 cut(s) 61, 120, 126, 239, 647
SmoI CTYRAG 5 cut(s) 61, 120, 126, 239, 647
SnaBI TACGTA 1 cut(s) 86
SsiI CCGC 1 cut(s) 1466
SspI AATATT 1 cut(s) 971
SspMI CTAG 4 cut(s) 344, 626, 981, 1061
SstI GAGCTC 1 cut(s) 1068
StyD4I CCNGG 1 cut(s) 1415
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 142, 665
TaiI ACGT 5 cut(s) 88, 252, 601, 888, 1045
TaqI TCGA 7 cut(s) 653, 960, 1023, 1053, 1204, 1395, 1447
TatI WGTACW 1 cut(s) 954
TfiI GAWTC 2 cut(s) 776, 1206
Tru1I TTAA 6 cut(s) 153, 234, 297, 566, 668, 704
Tru9I TTAA 6 cut(s) 153, 234, 297, 566, 668, 704
TscAI CASTG 2 cut(s) 957, 1009
TseFI GTSAC 2 cut(s) 886, 1000
TseI GCWGC 4 cut(s) 44, 898, 1270, 1433
Tsp45I GTSAC 2 cut(s) 886, 1000
TspDTI ATGAA 8 cut(s) 43, 64, 474, 801, 925, 1142, 1244, 1314
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 957, 1009
Tth111I GACNNNGTC 1 cut(s) 946
VpaK11BI GGWCC 1 cut(s) 1468
XagI CCTNNNNNAGG 1 cut(s) 979
XapI RAATTY 5 cut(s) 381, 393, 503, 527, 927
XceI RCATGY 1 cut(s) 996
XmaJI CCTAGG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 1080
XspI CTAG 4 cut(s) 344, 626, 981, 1061
ZraI GACGTC 1 cut(s) 886
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.