Rh6AG032900

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000053
Physical Location & Seq
Reverse (-)
4058308 .. 4062493
4186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG032900.1

Sequence Viewer

Length: 1458 bp
ATGTCTCTCCAAGTTCTGGCATCTCAAGCTCAAAGGCCAGATACCGTTACTGATGTTAAGCGACCTTCAGCTAATTTTACCCCAAGCATTTGGGGTGATCATTTTCTCTCTTATGCTACCACGGAAGTTGACATTAAACTTGAGCAACATGTCCGAGAACTGAAAGAAGAGGTGAAAAGAATGCTAATAGACTCCTTCAAAAACCCTTCACAACAATTGGACTTGGTTGATGACATTCAACGCCTAGGCGTGTCCTATCATTTTGAAAATGAGATTGATGAAATTTTGAAACAAATTCACCACAACTACTCTTATGGTAGTGAAGATGACCTTTACACTACTGCTCTCCGTTTTCGATTGCTGAGACAACAAGGTTACAATGTTTCATGCAATATGTTCAACAAGTACATGGAAGCAAATGATCAAAAATTTAAGGCATCTCTCTTGAGTGATGTATCAGGACTATTAAGCTTGTATGAAGCCGCCCATCTTAGGATACACGGTGAAGACATACTTGAAGAGGCTCTAGCTTTCACCACCACTCATCTTGAGTCGATCAAACACAGTTTAAGCCCTCCACTTTCGAAACAAGTAGCTCATTCCTTAATTCAGCCACGTCGGAAGGGCATCACAAGGGTGGAAGCTAGATATAACTTGTCAATCTATCATGAACGCGATTCACATAACGAGACTCTCCTGACTTTTGCAAAGTTGGATTTCAACCTACTGCAGCAAGTCCATCAAAAGGAACTATGTGAAATTACAAGGTGGGACATCTATGCCATAGATCTGTTACCTGCAAATTATATGAAAGTCTGTTATAAGGCACTTTTAGAAGTCTACACTGAAATTGAAGAAGAGCTTGCAAAGGAAAGAAAGTTGTATCGAATCTACTACGCCAAAGAAGCTATGAAAAAGCAAGCTGAAAATTACTTCCTTGAAGCTAAATGGTTGCACCAGAAACACATACCAACAATGGATGAATACATGGCCCTAGCTTTAATGACCACAGGCTACCCTCTGCTAATGACAACATCTTTTGTTGGAATGGGAGATATTGCAACACAAGACTCCTTCGATTGGTTGGCCACTTATCCCAAGGCTGTAAAAGCGGCTGCAGTAGTTGGCCGACTCATGGATGACATAGCGGACCATAAGTTTGAGCAAAAGAGAGGACATGTTATAACCTCAGCTGTAGAGTGCTACATGAAAGAATATGGTGCCACAGAAGAAGAAGCAATAATCGAATTGCGTAGGAAAGTGAGTGACGCATGGAAGGACATAAATGAATCGTTCCTCCTCCCTAATGTTGTTCCAAGGCCATTGCTGACTCGAATTATTAACTTTGCATGTGCCACGGATGTTCTATACAAGTACGGAGACGGTTACACTACTCTTCATGATACTGTGCTCAAGGATTTTGTAATTTCTACACTTGTCCAACCCGTGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

485

Amino Acids

56.07

Weight (kDa)

5.73

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 202 1.4e-59 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 254 - 427 1.9e-62 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 254 - 427 7e-46 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 822, 1184
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 1220
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 840
AccII CGCG 1 cut(s) 675
AciI CCGC 3 cut(s) 483, 1112, 1148
AcoI YGGCCR 2 cut(s) 1086, 1126
AcsI RAATTY 3 cut(s) 282, 294, 428
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 407, 1376
AfiI CCNNNNNNNGG 5 cut(s) 16, 492, 745, 1080, 1135
AflIII ACRYGT 2 cut(s) 148, 1177
AgsI TTSAA 9 cut(s) 199, 239, 266, 289, 400, 518, 721, 854, 941
AjiI CACGTC 1 cut(s) 617
AleI CACNNNNGTG 1 cut(s) 635
Alw21I GWGCWC 1 cut(s) 1413
Alw26I GTCTC 4 cut(s) 9, 358, 683, 1374
AoxI GGCC 5 cut(s) 35, 990, 1086, 1126, 1319
ApeKI GCWGC 2 cut(s) 730, 1115
ApoI RAATTY 3 cut(s) 282, 294, 428
ArsI GACNNNNNNTTYG 2 cut(s) 1142, 1174
AspA2I CCTAGG 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 991, 1150
AsuHPI GGTGA 5 cut(s) 107, 184, 290, 515, 526
AsuII TTCGAA 1 cut(s) 584
AvaII GGWCC 1 cut(s) 1150
AvrII CCTAGG 1 cut(s) 244
BalI TGGCCA 1 cut(s) 1088
BanI GGYRCC 1 cut(s) 1220
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 1413
BbvCI CCTCAGC 1 cut(s) 1189
BbvI GCAGC 2 cut(s) 742, 1102
BccI CCATC 2 cut(s) 495, 747
BciVI GTATCC 1 cut(s) 489
BclI TGATCA 2 cut(s) 97, 421
BcoDI GTCTC 4 cut(s) 9, 358, 683, 1374
BfaI CTAG 4 cut(s) 245, 527, 645, 995
BfmI CTRYAG 3 cut(s) 728, 1116, 1194
BfuAI ACCTGC 1 cut(s) 805
BfuI GTATCC 1 cut(s) 489
BglII AGATCT 1 cut(s) 787
BisI GCNGC 4 cut(s) 483, 731, 1113, 1116
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 4 cut(s) 484, 732, 1114, 1117
Bme18I GGWCC 1 cut(s) 1150
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 991, 1150
BmiI GGNNCC 1 cut(s) 1222
BmsI GCATC 3 cut(s) 29, 446, 636
BpiI GAAGAC 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 1189
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 5 cut(s) 9, 161, 466, 569, 1397
BsaJI CCNNGG 5 cut(s) 120, 244, 1098, 1316, 1356
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 492, 745, 1080, 1135
Bse3DI GCAATG 1 cut(s) 1322
BseDI CCNNGG 5 cut(s) 120, 244, 1098, 1316, 1356
BseGI GGATG 3 cut(s) 985, 1144, 1366
BseLI CCNNNNNNNGG 5 cut(s) 16, 492, 745, 1080, 1135
BseMI GCAATG 1 cut(s) 1322
BseMII CTCAG 2 cut(s) 353, 1203
BseRI GAGGAG 1 cut(s) 1289
BseXI GCAGC 2 cut(s) 742, 1102
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 5 cut(s) 37, 992, 1088, 1128, 1321
BshNI GGYRCC 1 cut(s) 1220
BsiHKAI GWGCWC 1 cut(s) 1413
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 5 cut(s) 16, 492, 745, 1080, 1135
BsmAI GTCTC 4 cut(s) 9, 358, 683, 1374
BsmBI CGTCTC 1 cut(s) 1374
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 5 cut(s) 37, 992, 1088, 1128, 1321
Bsp119I TTCGAA 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 1413
Bsp143I GATC 4 cut(s) 97, 421, 555, 787
BspACI CCGC 3 cut(s) 483, 1112, 1148
BspANI GGCC 5 cut(s) 37, 992, 1088, 1128, 1321
BspCNI CTCAG 2 cut(s) 354, 1202
BspFNI CGCG 1 cut(s) 675
BspHI TCATGA 2 cut(s) 667, 1399
BspLI GGNNCC 1 cut(s) 1222
BspMAI CTGCAG 2 cut(s) 732, 1120
BspMI ACCTGC 1 cut(s) 805
BspQI GCTCTTC 1 cut(s) 852
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 1220
BsrDI GCAATG 1 cut(s) 1322
BssECI CCNNGG 5 cut(s) 120, 244, 1098, 1316, 1356
BssMI GATC 4 cut(s) 97, 421, 555, 787
BssT1I CCWWGG 3 cut(s) 244, 1098, 1316
Bst4CI ACNGT 5 cut(s) 46, 503, 566, 1385, 1408
Bst6I CTCTTC 4 cut(s) 162, 513, 852, 1401
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 864, 921
BstDEI CTNAG 3 cut(s) 362, 491, 1189
BstDSI CCRYGG 2 cut(s) 120, 1356
BstF5I GGATG 3 cut(s) 985, 1144, 1366
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 4 cut(s) 100, 424, 558, 790
BstMAI GTCTC 4 cut(s) 9, 358, 683, 1374
BstMBI GATC 4 cut(s) 97, 421, 555, 787
BstMWI GCNNNNNNNGC 3 cut(s) 26, 905, 1109
BstNSI RCATGY 3 cut(s) 152, 1181, 1353
BstSFI CTRYAG 3 cut(s) 728, 1116, 1194
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 742, 1102
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 787
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 1 cut(s) 787
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 5 cut(s) 37, 992, 1088, 1128, 1321
BtgI CCRYGG 2 cut(s) 120, 1356
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 3 cut(s) 985, 1144, 1366
BtsIMutI CAGTG 1 cut(s) 843
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 864, 921
CciI TCATGA 2 cut(s) 667, 1399
Cfr13I GGNCC 2 cut(s) 991, 1150
CseI GACGC 1 cut(s) 1277
Csp6I GTAC 2 cut(s) 406, 1375
CspCI CAANNNNNGTGG 4 cut(s) 109, 144, 529, 564
CviQI GTAC 2 cut(s) 406, 1375
DdeI CTNAG 3 cut(s) 362, 491, 1189
DpnI GATC 4 cut(s) 99, 423, 557, 789
DpnII GATC 4 cut(s) 97, 421, 555, 787
EaeI YGGCCR 2 cut(s) 1086, 1126
Eam1104I CTCTTC 4 cut(s) 162, 513, 852, 1401
EarI CTCTTC 4 cut(s) 162, 513, 852, 1401
Eco130I CCWWGG 3 cut(s) 244, 1098, 1316
Eco47I GGWCC 1 cut(s) 1150
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 3 cut(s) 244, 1098, 1316
ErhI CCWWGG 3 cut(s) 244, 1098, 1316
Esp3I CGTCTC 1 cut(s) 1374
FalI AAGNNNNNCTT 6 cut(s) 315, 347, 498, 530, 846, 878
FaqI GGGAC 1 cut(s) 785
FbaI TGATCA 2 cut(s) 97, 421
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 483, 731, 1113, 1116
FokI GGATG 3 cut(s) 992, 1151, 1373
Fsp4HI GCNGC 4 cut(s) 483, 731, 1113, 1116
FspBI CTAG 4 cut(s) 245, 527, 645, 995
GluI GCNGC 4 cut(s) 483, 731, 1113, 1116
HaeIII GGCC 5 cut(s) 37, 992, 1088, 1128, 1321
HgaI GACGC 1 cut(s) 1277
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 9 cut(s) 191, 551, 677, 691, 888, 1070, 1131, 1289, 1330
HphI GGTGA 5 cut(s) 107, 184, 290, 515, 526
Hpy166II GTNNAC 2 cut(s) 130, 841
Hpy188I TCNGA 2 cut(s) 155, 621
Hpy188III TCNNGA 6 cut(s) 445, 459, 548, 668, 697, 1400
Hpy8I GTNNAC 2 cut(s) 130, 841
Hpy99I CGWCG 1 cut(s) 621
HpyAV CCTTC 6 cut(s) 75, 205, 216, 616, 1084, 1270
HpyCH4III ACNGT 5 cut(s) 46, 503, 566, 1385, 1408
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 9 cut(s) 390, 707, 730, 800, 866, 955, 1061, 1118, 1349
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 905, 1109
HpyF3I CTNAG 3 cut(s) 362, 491, 1189
HpySE526I ACGT 1 cut(s) 616
Ksp22I TGATCA 2 cut(s) 97, 421
Kzo9I GATC 4 cut(s) 97, 421, 555, 787
LguI GCTCTTC 1 cut(s) 852
LpnPI CCDG 7 cut(s) 2, 51, 444, 710, 810, 971, 996
Lsp1109I GCAGC 2 cut(s) 742, 1102
LweI GCATC 3 cut(s) 29, 446, 636
MaeI CTAG 4 cut(s) 245, 527, 645, 995
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 5 cut(s) 46, 374, 792, 1265, 1385
MalI GATC 4 cut(s) 99, 423, 557, 789
MboI GATC 4 cut(s) 97, 421, 555, 787
MboII GAAGA 9 cut(s) 179, 335, 518, 530, 866, 869, 1241, 1244, 1388
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 1413
MlsI TGGCCA 1 cut(s) 1088
MluNI TGGCCA 1 cut(s) 1088
MlyI GAGTC 6 cut(s) 185, 560, 685, 1064, 1125, 1324
MmeI TCCRAC 3 cut(s) 599, 693, 1024
MnlI CCTC 8 cut(s) 163, 514, 585, 1029, 1166, 1198, 1307, 1310
Mox20I TGGCCA 1 cut(s) 1088
MscI TGGCCA 1 cut(s) 1088
MseI TTAA 8 cut(s) 57, 135, 432, 467, 569, 605, 1001, 1341
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 1088
MspA1I CMGCKG 1 cut(s) 1193
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 186
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 3 cut(s) 26, 905, 1109
NdeII GATC 4 cut(s) 97, 421, 555, 787
NlaIV GGNNCC 1 cut(s) 1222
NmuCI GTSAC 1 cut(s) 1265
NspI RCATGY 3 cut(s) 152, 1181, 1353
NspV TTCGAA 1 cut(s) 584
OliI CACNNNNGTG 1 cut(s) 635
PagI TCATGA 2 cut(s) 667, 1399
PciI ACATGT 2 cut(s) 148, 1177
PciSI GCTCTTC 1 cut(s) 852
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 677, 888, 1289
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 4 cut(s) 484, 732, 1114, 1117
PleI GAGTC 6 cut(s) 185, 559, 685, 1064, 1125, 1324
PpsI GAGTC 6 cut(s) 185, 559, 685, 1064, 1125, 1324
PscI ACATGT 2 cut(s) 148, 1177
PsiI TTATAA 2 cut(s) 822, 1184
PspN4I GGNNCC 1 cut(s) 1222
PspPI GGNCC 2 cut(s) 991, 1150
PstI CTGCAG 2 cut(s) 732, 1120
PsuI RGATCY 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 1193
RsaI GTAC 2 cut(s) 407, 1376
RsaNI GTAC 2 cut(s) 406, 1375
RseI CAYNNNNRTG 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 852
SaqAI TTAA 8 cut(s) 57, 135, 432, 467, 569, 605, 1001, 1341
SatI GCNGC 4 cut(s) 483, 731, 1113, 1116
Sau3AI GATC 4 cut(s) 97, 421, 555, 787
Sau96I GGNCC 2 cut(s) 991, 1150
SchI GAGTC 6 cut(s) 185, 560, 685, 1064, 1125, 1324
SduI GDGCHC 1 cut(s) 1413
SfaNI GCATC 3 cut(s) 29, 446, 636
SfcI CTRYAG 3 cut(s) 728, 1116, 1194
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 1 cut(s) 1150
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 5 cut(s) 24, 140, 445, 548, 1412
SmoI CTYRAG 5 cut(s) 24, 140, 445, 548, 1412
SsiI CCGC 3 cut(s) 483, 1112, 1148
SspMI CTAG 4 cut(s) 245, 527, 645, 995
StyI CCWWGG 3 cut(s) 244, 1098, 1316
TaaI ACNGT 5 cut(s) 46, 503, 566, 1385, 1408
TaiI ACGT 1 cut(s) 619
TaqI TCGA 7 cut(s) 355, 554, 584, 886, 1077, 1245, 1333
TatI WGTACW 1 cut(s) 405
TauI GCSGC 2 cut(s) 485, 1115
TfiI GAWTC 3 cut(s) 677, 888, 1289
Tru1I TTAA 8 cut(s) 57, 135, 432, 467, 569, 605, 1001, 1341
Tru9I TTAA 8 cut(s) 57, 135, 432, 467, 569, 605, 1001, 1341
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 1265
TseI GCWGC 2 cut(s) 730, 1115
Tsp45I GTSAC 1 cut(s) 1265
TspGWI ACGGA 4 cut(s) 137, 338, 1373, 1392
TspRI CASTG 1 cut(s) 850
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 1150
XapI RAATTY 3 cut(s) 282, 294, 428
XceI RCATGY 3 cut(s) 152, 1181, 1353
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 840
XspI CTAG 4 cut(s) 245, 527, 645, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.