MD03G1206700.v1.1

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000053
Physical Location & Seq
Reverse (-)
28261537 .. 28265987
4451 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1206700.v1.1.491

Sequence Viewer

Length: 1686 bp
ATGTCATCACCATCTCAAGCTCATACCTCAAAAAAAATTCCTAGTGATGTTAATCGACGTTCAGCTAATTTTCCCCCCAACTTTTGGGGAGATTATTTTTTATCATATGCTTCAGTGGAAAAAAATATTGAAGCTGAGAAACTTGTCCAAGAATTAAAGGAAAATGTGAAGAGAATGATATTGGCTCCAACGCCTTGTAAGCATTCAGATAAGCTGGACTTGGTCGATACGATTCAGCGCTTAGGTGTCTCCTACCATTTTGAGGATGAGATTGATGAAGTTTTGCAGCAAATTCGCAAGGATTCTTATGATGGTAGTCACCAACACCAAGGGAGGGATGATGATCACAACCTTCACGCAGATGCTCTATATTTTCGATTGCTTAGACAACAAGGTTATGATATATCATGTGAAATGTTCAACAAGTTTAAGGACGATGAAGGCAAATTTAAGGAGTCACTTGTCAATGATGTCATCGGACTATTAAGCTTGTACGAAGCAACACAGCTAAGGGTACACGGTGAGGATATACTAGAAGAGGCATTAACCTTCACCACCACTCATTTGAAGTCGGTAGAAAATCGTTTGAGCTCCCCGCTTTCGAAACTCGTAACTCATGCATTGTACCAGCCGTTTTGGAAGGGCAACCCAAGGCTAGAAGCAAGGCGTTACTTGTCCATTTACCAGGAAGACGATTCACATAATGAAACTCTCTTAACTTCTGCAAAGTTGGATTTCAATCTCTTGCAGCAAGTCCATCAGAAAGAACTAAGTGAAATTTCAAGGTGGTCGAAGGACTTGGATTTTGTAAGCAAACTACCTTTTGCAAGAGACAGAATTGTTGAGAGCTACCTTTGGGGGTTAGGGTGCTACTTTGAACCTCAATATGACTTTGCTCGGATGACATTAAGCAAAGTAATTGGCCTTATTGTGGGTATTGATGACATCTATGATGTCTATGGCACATTTGAAGAACTAGAGCTCTTTACTAATGCTGTTGAGAGGTGGGATATCTCTGCCATGGATCGTCTGCCACAGTACATGAAAGTTTGCTATCAGGCAATGTTGGATTCATACACAGAAATGGAAGAAAAGCTTCGAAATGAGGGGAACTTATATCGAATCCACTATGCTAGAGAAGCAATGAAAGTTCTAGTTAGAGGGTACATGAGGGAAGCCAAATGGTTCCATCGCAAATACACACCTACATTGGATGAATATTTGTCAGCAGCACTTGATACATCCTCCTTTTCCCTAGCTGTCACGTCTTTTATTGGAATGGGAGATATTGTTACAAAAGACTCATTGGATTGGGTTTTCAATGACCCTAAGATTTTAAAGGCTGCATCCTTAATTGGTAGACTCAAGAATGACATCAAGTCCCACCAGTTTGAACAGAAGAGAGGACACGTTGCCTCGGCCGTGGAATGCTACATGAAACAATATGATGTCGCAGAAGAAGAAGCAACACTTGGACTAAGTAAACAAGTGAATAATGCATGGAAGGACATAAACGAAGCGTTGCTCCACCAAACCACCACAATCCCCATGCCTCTCCTGTTGCGAATTCTCAATCTTACACGAGTGGTCGAAGTGTTATACAAGCACGGTGACGCATTTACTAATACTGGAACTTTTCTCAAGGATATTGTAGTTTCTCTGTTTGTCGAACCGGTGCATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

562

Amino Acids

64.97

Weight (kDa)

5.56

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 29 - 208 7.6e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 265 - 503 1.7e-97 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 305 - 503 1.8e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 84
AccI GTMKAC 1 cut(s) 1360
AciI CCGC 1 cut(s) 596
AclWI GGATC 1 cut(s) 1032
AcoI YGGCCR 1 cut(s) 1419
AcsI RAATTY 5 cut(s) 36, 291, 446, 777, 1566
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 5 cut(s) 494, 516, 626, 1040, 1166
AfeI AGCGCT 1 cut(s) 239
AfiI CCNNNNNNNGG 4 cut(s) 84, 262, 334, 931
AflIII ACRYGT 1 cut(s) 1408
AgeI ACCGGT 1 cut(s) 1672
AgsI TTSAA 9 cut(s) 131, 421, 568, 739, 783, 878, 971, 1321, 1394
AhdI GACNNNNNGTC 1 cut(s) 1378
AjiI CACGTC 1 cut(s) 1266
AjnI CCWGG 1 cut(s) 684
AjuI GAANNNNNNNTTGG 2 cut(s) 1455, 1487
Alw21I GWGCWC 2 cut(s) 593, 984
Alw26I GTCTC 2 cut(s) 253, 825
AlwI GGATC 1 cut(s) 1032
Aor51HI AGCGCT 1 cut(s) 239
AoxI GGCC 2 cut(s) 922, 1419
ApeKI GCWGC 4 cut(s) 286, 748, 1229, 1343
ApoI RAATTY 5 cut(s) 36, 291, 446, 777, 1566
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AsiGI ACCGGT 1 cut(s) 1672
Asp700I GAANNNNTTC 1 cut(s) 1095
AspLEI GCGC 1 cut(s) 240
AsuHPI GGTGA 4 cut(s) 311, 533, 544, 1622
AsuII TTCGAA 2 cut(s) 602, 1099
BanII GRGCYC 2 cut(s) 593, 984
BauI CACGAG 1 cut(s) 1581
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 2 cut(s) 593, 984
BbvI GCAGC 4 cut(s) 298, 760, 1241, 1330
BccI CCATC 4 cut(s) 19, 305, 765, 1197
BceAI ACGGC 2 cut(s) 616, 1406
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 686
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 253, 825
BfaI CTAG 7 cut(s) 42, 533, 656, 977, 1134, 1154, 1256
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 4 cut(s) 287, 749, 1230, 1344
BlsI GCNGC 4 cut(s) 288, 750, 1231, 1345
Bme1390I CCNGG 1 cut(s) 686
BmeRI GACNNNNNGTC 1 cut(s) 1378
BmgBI CACGTC 1 cut(s) 1266
BmiI GGNNCC 2 cut(s) 186, 1187
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 2 cut(s) 352, 1355
BpiI GAAGAC 1 cut(s) 696
Bpu10I CCTNAGC 2 cut(s) 241, 509
Bpu14I TTCGAA 2 cut(s) 602, 1099
BpuEI CTTGAG 2 cut(s) 1349, 1625
BsaBI GATNNNNATC 3 cut(s) 51, 342, 738
BsaJI CCNNGG 5 cut(s) 328, 650, 1020, 1416, 1422
BsaWI WCCGGW 1 cut(s) 1672
BsaXI ACNNNNNCTCC 2 cut(s) 1275, 1305
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 262, 334, 931
Bse118I RCCGGY 1 cut(s) 1672
Bse1I ACTGG 2 cut(s) 1387, 1633
Bse3DI GCAATG 2 cut(s) 1068, 1149
Bse8I GATNNNNATC 3 cut(s) 51, 342, 738
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 5 cut(s) 328, 650, 1020, 1416, 1422
BseGI GGATG 6 cut(s) 271, 343, 906, 1219, 1241, 1346
BseJI GATNNNNATC 3 cut(s) 51, 342, 738
BseLI CCNNNNNNNGG 4 cut(s) 84, 262, 334, 931
BseMI GCAATG 2 cut(s) 1068, 1149
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 1387, 1633
BseX3I CGGCCG 1 cut(s) 1419
BseXI GCAGC 4 cut(s) 298, 760, 1241, 1330
Bsh1285I CGRYCG 1 cut(s) 1422
BshFI GGCC 2 cut(s) 924, 1421
BshTI ACCGGT 1 cut(s) 1672
BsiEI CGRYCG 1 cut(s) 1422
BsiHKAI GWGCWC 2 cut(s) 593, 984
BsiSI CCGG 1 cut(s) 1673
BslFI GGGAC 1 cut(s) 1366
BslI CCNNNNNNNGG 4 cut(s) 84, 262, 334, 931
BsmAI GTCTC 2 cut(s) 253, 825
BsmFI GGGAC 1 cut(s) 1366
BsmI GAATGC 2 cut(s) 202, 1433
BsnI GGCC 2 cut(s) 924, 1421
Bsp119I TTCGAA 2 cut(s) 602, 1099
Bsp1286I GDGCHC 2 cut(s) 593, 984
Bsp143I GATC 2 cut(s) 343, 1024
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 1 cut(s) 596
BspANI GGCC 2 cut(s) 924, 1421
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 186, 1187
BspPI GGATC 1 cut(s) 1032
BspT104I TTCGAA 2 cut(s) 602, 1099
BsrDI GCAATG 2 cut(s) 1068, 1149
BsrFI RCCGGY 1 cut(s) 1672
BsrI ACTGG 2 cut(s) 1387, 1633
BssAI RCCGGY 1 cut(s) 1672
BssECI CCNNGG 5 cut(s) 328, 650, 1020, 1416, 1422
BssMI GATC 2 cut(s) 343, 1024
BssSI CACGAG 1 cut(s) 1581
BssT1I CCWWGG 3 cut(s) 328, 650, 1020
Bst2BI CACGAG 1 cut(s) 1581
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 3 cut(s) 521, 1038, 1610
Bst6I CTCTTC 3 cut(s) 164, 531, 1394
BstBI TTCGAA 2 cut(s) 602, 1099
BstDEI CTNAG 7 cut(s) 135, 241, 383, 509, 770, 1329, 1478
BstDSI CCRYGG 2 cut(s) 1020, 1422
BstF5I GGATG 6 cut(s) 271, 343, 906, 1219, 1241, 1346
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 346, 1027
BstMAI GTCTC 2 cut(s) 253, 825
BstMBI GATC 2 cut(s) 343, 1024
BstMCI CGRYCG 1 cut(s) 1422
BstMWI GCNNNNNNNGC 2 cut(s) 199, 1139
BstNI CCWGG 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 684
BstV1I GCAGC 4 cut(s) 298, 760, 1241, 1330
BstV2I GAAGAC 1 cut(s) 696
BstZI CGGCCG 1 cut(s) 1419
BsuRI GGCC 2 cut(s) 924, 1421
BtgI CCRYGG 2 cut(s) 1020, 1422
BtgZI GCGATG 1 cut(s) 1175
BtrI CACGTC 1 cut(s) 1266
BtsCI GGATG 6 cut(s) 271, 343, 906, 1219, 1241, 1346
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 1672
CseI GACGC 1 cut(s) 1622
Csp6I GTAC 5 cut(s) 493, 515, 625, 1039, 1165
CspAI ACCGGT 1 cut(s) 1672
CviAII CATG 8 cut(s) 408, 617, 1021, 1042, 1168, 1435, 1500, 1549
CviQI GTAC 5 cut(s) 493, 515, 625, 1039, 1165
DdeI CTNAG 7 cut(s) 135, 241, 383, 509, 770, 1329, 1478
DpnI GATC 2 cut(s) 345, 1026
DpnII GATC 2 cut(s) 343, 1024
DraI TTTAAA 1 cut(s) 1338
DriI GACNNNNNGTC 1 cut(s) 1378
EaeI YGGCCR 1 cut(s) 1419
EagI CGGCCG 1 cut(s) 1419
Eam1104I CTCTTC 3 cut(s) 164, 531, 1394
Eam1105I GACNNNNNGTC 1 cut(s) 1378
EarI CTCTTC 3 cut(s) 164, 531, 1394
Ecl136II GAGCTC 2 cut(s) 591, 982
EclXI CGGCCG 1 cut(s) 1419
Eco130I CCWWGG 3 cut(s) 328, 650, 1020
Eco24I GRGCYC 2 cut(s) 593, 984
Eco32I GATATC 1 cut(s) 1012
Eco47III AGCGCT 1 cut(s) 239
Eco52I CGGCCG 1 cut(s) 1419
Eco53kI GAGCTC 2 cut(s) 591, 982
Eco57I CTGAAG 1 cut(s) 96
EcoICRI GAGCTC 2 cut(s) 591, 982
EcoRI GAATTC 1 cut(s) 1566
EcoRII CCWGG 1 cut(s) 684
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 3 cut(s) 328, 650, 1020
EcoT22I ATGCAT 2 cut(s) 622, 1501
EcoT38I GRGCYC 2 cut(s) 593, 984
ErhI CCWWGG 3 cut(s) 328, 650, 1020
FaeI CATG 8 cut(s) 411, 620, 1024, 1045, 1171, 1438, 1503, 1552
FalI AAGNNNNNCTT 6 cut(s) 203, 235, 1080, 1112, 1455, 1487
FaqI GGGAC 1 cut(s) 1366
FatI CATG 8 cut(s) 407, 616, 1020, 1041, 1167, 1434, 1499, 1548
FauI CCCGC 1 cut(s) 603
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 1360
Fnu4HI GCNGC 4 cut(s) 287, 749, 1230, 1344
FokI GGATG 6 cut(s) 278, 350, 913, 1226, 1228, 1333
FriOI GRGCYC 2 cut(s) 593, 984
Fsp4HI GCNGC 4 cut(s) 287, 749, 1230, 1344
FspBI CTAG 7 cut(s) 42, 533, 656, 977, 1134, 1154, 1256
GlaI GCGC 1 cut(s) 239
GluI GCNGC 4 cut(s) 287, 749, 1230, 1344
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 924, 1421
HapII CCGG 1 cut(s) 1673
HgaI GACGC 1 cut(s) 1622
HhaI GCGC 1 cut(s) 240
Hin1II CATG 8 cut(s) 411, 620, 1024, 1045, 1171, 1438, 1503, 1552
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 487, 1094
HinfI GANTC 8 cut(s) 232, 302, 455, 695, 1070, 1122, 1301, 1362
HpaII CCGG 1 cut(s) 1673
HphI GGTGA 4 cut(s) 311, 533, 544, 1622
Hpy166II GTNNAC 3 cut(s) 517, 1361, 1484
Hpy188I TCNGA 4 cut(s) 208, 479, 762, 900
Hpy188III TCNNGA 1 cut(s) 1366
Hpy8I GTNNAC 3 cut(s) 517, 1361, 1484
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 6 cut(s) 362, 434, 559, 634, 787, 1498
HpyCH4III ACNGT 3 cut(s) 521, 1038, 1610
HpyCH4IV ACGT 3 cut(s) 58, 1265, 1410
HpyCH4V TGCA 8 cut(s) 286, 620, 725, 748, 827, 1346, 1499, 1678
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 1139
HpyF3I CTNAG 7 cut(s) 135, 241, 383, 509, 770, 1329, 1478
HpySE526I ACGT 3 cut(s) 58, 1265, 1410
Hsp92II CATG 8 cut(s) 411, 620, 1024, 1045, 1171, 1438, 1503, 1552
HspAI GCGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 343, 1024
LmnI GCTCC 3 cut(s) 190, 596, 1530
LpnPI CCDG 8 cut(s) 200, 641, 671, 698, 1043, 1400, 1571, 1614
Lsp1109I GCAGC 4 cut(s) 298, 760, 1241, 1330
LweI GCATC 2 cut(s) 352, 1355
MaeI CTAG 7 cut(s) 42, 533, 656, 977, 1134, 1154, 1256
MaeII ACGT 3 cut(s) 58, 1265, 1410
MaeIII GTNAC 7 cut(s) 317, 456, 610, 668, 1261, 1291, 1610
MalI GATC 2 cut(s) 345, 1026
MboI GATC 2 cut(s) 343, 1024
MboII GAAGA 8 cut(s) 181, 548, 701, 983, 1100, 1411, 1469, 1472
MhlI GDGCHC 2 cut(s) 593, 984
MlyI GAGTC 3 cut(s) 464, 1295, 1356
MmeI TCCRAC 3 cut(s) 212, 711, 1047
Mph1103I ATGCAT 2 cut(s) 622, 1501
MroXI GAANNNNTTC 1 cut(s) 1095
MslI CAYNNNNRTG 2 cut(s) 360, 1082
MspI CCGG 1 cut(s) 1673
MspR9I CCNGG 1 cut(s) 686
Mva1269I GAATGC 2 cut(s) 202, 1433
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 2 cut(s) 199, 1139
NcoI CCATGG 1 cut(s) 1020
NdeI CATATG 1 cut(s) 106
NdeII GATC 2 cut(s) 343, 1024
NlaIII CATG 8 cut(s) 411, 620, 1024, 1045, 1171, 1438, 1503, 1552
NlaIV GGNNCC 2 cut(s) 186, 1187
NmeAIII GCCGAG 1 cut(s) 1397
NmuCI GTSAC 4 cut(s) 317, 456, 1261, 1610
NsiI ATGCAT 2 cut(s) 622, 1501
NspV TTCGAA 2 cut(s) 602, 1099
PctI GAATGC 2 cut(s) 202, 1433
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 5 cut(s) 232, 302, 695, 1070, 1122
PflFI GACNNNGTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 1672
PkrI GCNGC 4 cut(s) 288, 750, 1231, 1345
PleI GAGTC 3 cut(s) 463, 1295, 1356
PpsI GAGTC 3 cut(s) 463, 1295, 1356
Psp124BI GAGCTC 2 cut(s) 593, 984
Psp6I CCWGG 1 cut(s) 684
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 186, 1187
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 5 cut(s) 494, 516, 626, 1040, 1166
RsaNI GTAC 5 cut(s) 493, 515, 625, 1039, 1165
RseI CAYNNNNRTG 2 cut(s) 360, 1082
SacI GAGCTC 2 cut(s) 593, 984
SatI GCNGC 4 cut(s) 287, 749, 1230, 1344
Sau3AI GATC 2 cut(s) 343, 1024
SchI GAGTC 3 cut(s) 464, 1295, 1356
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 2 cut(s) 593, 984
SfaNI GCATC 2 cut(s) 352, 1355
SfuI TTCGAA 2 cut(s) 602, 1099
SmiMI CAYNNNNRTG 2 cut(s) 360, 1082
SmlI CTYRAG 3 cut(s) 15, 1364, 1640
SmoI CTYRAG 3 cut(s) 15, 1364, 1640
SsiI CCGC 1 cut(s) 596
SspI AATATT 2 cut(s) 127, 1220
SspMI CTAG 7 cut(s) 42, 533, 656, 977, 1134, 1154, 1256
SstI GAGCTC 2 cut(s) 593, 984
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 3 cut(s) 328, 650, 1020
TaaI ACNGT 3 cut(s) 521, 1038, 1610
TaiI ACGT 3 cut(s) 61, 1268, 1413
TaqI TCGA 9 cut(s) 55, 225, 376, 602, 791, 1099, 1120, 1590, 1668
TatI WGTACW 1 cut(s) 1038
TfiI GAWTC 5 cut(s) 232, 302, 695, 1070, 1122
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 4 cut(s) 317, 456, 1261, 1610
TseI GCWGC 4 cut(s) 286, 748, 1229, 1343
Tsp45I GTSAC 4 cut(s) 317, 456, 1261, 1610
TspDTI ATGAA 8 cut(s) 291, 453, 720, 1058, 1062, 1160, 1230, 1451
TspRI CASTG 1 cut(s) 120
Tth111I GACNNNGTC 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 84
XapI RAATTY 5 cut(s) 36, 291, 446, 777, 1566
XmiI GTMKAC 1 cut(s) 1360
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 7 cut(s) 42, 533, 656, 977, 1134, 1154, 1256
Zsp2I ATGCAT 2 cut(s) 622, 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.