(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 29 - 200 | 1.7e-59 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 257 - 497 | 1e-94 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 298 - 497 | 5e-60 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1035 |
| AccI | GTMKAC | 1 cut(s) | 1578 |
| AciI | CCGC | 1 cut(s) | 1331 |
| AclWI | GGATC | 1 cut(s) | 998 |
| AcoI | YGGCCR | 1 cut(s) | 1299 |
| AcsI | RAATTY | 3 cut(s) | 279, 291, 422 |
| AcuI | CTGAAG | 2 cut(s) | 990, 1643 |
| AcyI | GRCGYC | 1 cut(s) | 933 |
| AfaI | GTAC | 4 cut(s) | 470, 851, 1097, 1603 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 486, 628, 739, 876, 1293, 1348 |
| AflIII | ACRYGT | 1 cut(s) | 145 |
| AhlI | ACTAGT | 1 cut(s) | 1132 |
| AjiI | CACGTC | 1 cut(s) | 148 |
| Alw21I | GWGCWC | 1 cut(s) | 1223 |
| Alw26I | GTCTC | 2 cut(s) | 9, 677 |
| AlwI | GGATC | 1 cut(s) | 998 |
| AoxI | GGCC | 5 cut(s) | 619, 1203, 1299, 1363, 1529 |
| ApeKI | GCWGC | 3 cut(s) | 361, 604, 1328 |
| ApoI | RAATTY | 3 cut(s) | 279, 291, 422 |
| AseI | ATTAAT | 1 cut(s) | 1214 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 975 |
| AspA2I | CCTAGG | 1 cut(s) | 1310 |
| AspS9I | GGNCC | 4 cut(s) | 187, 619, 1204, 1363 |
| AsuHPI | GGTGA | 2 cut(s) | 181, 520 |
| AsuII | TTCGAA | 3 cut(s) | 613, 855, 948 |
| AvaII | GGWCC | 1 cut(s) | 187 |
| AvrII | CCTAGG | 1 cut(s) | 1310 |
| BalI | TGGCCA | 1 cut(s) | 1301 |
| BbsI | GAAGAC | 1 cut(s) | 507 |
| Bbv12I | GWGCWC | 1 cut(s) | 1223 |
| BbvI | GCAGC | 3 cut(s) | 373, 616, 1315 |
| BccI | CCATC | 4 cut(s) | 269, 489, 741, 1586 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 593, 627 |
| BciVI | GTATCC | 1 cut(s) | 483 |
| BclI | TGATCA | 1 cut(s) | 415 |
| BcoDI | GTCTC | 2 cut(s) | 9, 677 |
| BcuI | ACTAGT | 1 cut(s) | 1132 |
| BfaI | CTAG | 8 cut(s) | 242, 521, 639, 876, 1113, 1133, 1208, 1311 |
| BfmI | CTRYAG | 2 cut(s) | 63, 1434 |
| BfuI | GTATCC | 1 cut(s) | 483 |
| BisI | GCNGC | 4 cut(s) | 362, 605, 1329, 1332 |
| BlnI | CCTAGG | 1 cut(s) | 1310 |
| BlsI | GCNGC | 4 cut(s) | 363, 606, 1330, 1333 |
| BmcAI | AGTACT | 1 cut(s) | 1603 |
| Bme18I | GGWCC | 1 cut(s) | 187 |
| BmgBI | CACGTC | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 4 cut(s) | 187, 619, 1204, 1363 |
| BmiI | GGNNCC | 1 cut(s) | 189 |
| BmsI | GCATC | 4 cut(s) | 26, 168, 440, 1177 |
| BpiI | GAAGAC | 1 cut(s) | 507 |
| BpmI | CTGGAG | 1 cut(s) | 977 |
| Bpu10I | CCTNAGC | 1 cut(s) | 356 |
| Bpu14I | TTCGAA | 3 cut(s) | 613, 855, 948 |
| BpuEI | CTTGAG | 2 cut(s) | 158, 563 |
| BsaHI | GRCGYC | 1 cut(s) | 933 |
| BsaJI | CCNNGG | 3 cut(s) | 117, 1310, 1526 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 461, 491 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 486, 628, 739, 876, 1293, 1348 |
| Bse1I | ACTGG | 1 cut(s) | 960 |
| BseDI | CCNNGG | 3 cut(s) | 117, 1310, 1526 |
| BseGI | GGATG | 7 cut(s) | 183, 887, 994, 1198, 1357, 1378, 1576 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 486, 628, 739, 876, 1293, 1348 |
| BseNI | ACTGG | 1 cut(s) | 960 |
| BseRI | GAGGAG | 1 cut(s) | 1499 |
| BseXI | GCAGC | 3 cut(s) | 373, 616, 1315 |
| BseYI | CCCAGC | 1 cut(s) | 834 |
| BsgI | GTGCAG | 1 cut(s) | 743 |
| BshFI | GGCC | 5 cut(s) | 621, 1205, 1301, 1365, 1531 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1223 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 486, 628, 739, 876, 1293, 1348 |
| BsmAI | GTCTC | 2 cut(s) | 9, 677 |
| BsnI | GGCC | 5 cut(s) | 621, 1205, 1301, 1365, 1531 |
| Bsp119I | TTCGAA | 3 cut(s) | 613, 855, 948 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1223 |
| Bsp143I | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| Bsp19I | CCATGG | 1 cut(s) | 117 |
| BspACI | CCGC | 1 cut(s) | 1331 |
| BspANI | GGCC | 5 cut(s) | 621, 1205, 1301, 1365, 1531 |
| BspHI | TCATGA | 2 cut(s) | 661, 1606 |
| BspLI | GGNNCC | 1 cut(s) | 189 |
| BspPI | GGATC | 1 cut(s) | 998 |
| BspT104I | TTCGAA | 3 cut(s) | 613, 855, 948 |
| BsrI | ACTGG | 1 cut(s) | 960 |
| BssECI | CCNNGG | 3 cut(s) | 117, 1310, 1526 |
| BssMI | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| BssNAI | GTATAC | 1 cut(s) | 1579 |
| BssNI | GRCGYC | 1 cut(s) | 933 |
| BssT1I | CCWWGG | 3 cut(s) | 117, 1310, 1526 |
| Bst1107I | GTATAC | 1 cut(s) | 1579 |
| Bst4CI | ACNGT | 3 cut(s) | 43, 1189, 1601 |
| Bst6I | CTCTTC | 2 cut(s) | 159, 507 |
| BstACI | GRCGYC | 1 cut(s) | 933 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1657 |
| BstBI | TTCGAA | 3 cut(s) | 613, 855, 948 |
| BstC8I | GCNNGC | 1 cut(s) | 1077 |
| BstDEI | CTNAG | 3 cut(s) | 356, 485, 718 |
| BstDSI | CCRYGG | 1 cut(s) | 117 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 874 |
| BstF5I | GGATG | 7 cut(s) | 183, 887, 994, 1198, 1357, 1378, 1576 |
| BstKTI | GATC | 5 cut(s) | 97, 325, 418, 552, 1006 |
| BstMAI | GTCTC | 2 cut(s) | 9, 677 |
| BstMBI | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 361, 1118, 1657 |
| BstNSI | RCATGY | 1 cut(s) | 1563 |
| BstSFI | CTRYAG | 2 cut(s) | 63, 1434 |
| BstV1I | GCAGC | 3 cut(s) | 373, 616, 1315 |
| BstV2I | GAAGAC | 1 cut(s) | 507 |
| BstX2I | RGATCY | 1 cut(s) | 1003 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 87 |
| BstYI | RGATCY | 1 cut(s) | 1003 |
| BstZ17I | GTATAC | 1 cut(s) | 1579 |
| BsuI | GTATCC | 1 cut(s) | 483 |
| BsuRI | GGCC | 5 cut(s) | 621, 1205, 1301, 1365, 1531 |
| BtgI | CCRYGG | 1 cut(s) | 117 |
| BtrI | CACGTC | 1 cut(s) | 148 |
| BtsCI | GGATG | 7 cut(s) | 183, 887, 994, 1198, 1357, 1378, 1576 |
| BtsI | GCAGTG | 1 cut(s) | 897 |
| BtsIMutI | CAGTG | 4 cut(s) | 852, 897, 986, 1194 |
| Cac8I | GCNNGC | 1 cut(s) | 1077 |
| CciI | TCATGA | 2 cut(s) | 661, 1606 |
| Cfr13I | GGNCC | 4 cut(s) | 187, 619, 1204, 1363 |
| CseI | GACGC | 2 cut(s) | 941, 1487 |
| Csp6I | GTAC | 4 cut(s) | 469, 850, 1096, 1602 |
| CviQI | GTAC | 4 cut(s) | 469, 850, 1096, 1602 |
| DdeI | CTNAG | 3 cut(s) | 356, 485, 718 |
| DpnI | GATC | 5 cut(s) | 96, 324, 417, 551, 1005 |
| DpnII | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| DraI | TTTAAA | 1 cut(s) | 195 |
| EaeI | YGGCCR | 1 cut(s) | 1299 |
| Eam1104I | CTCTTC | 2 cut(s) | 159, 507 |
| EarI | CTCTTC | 2 cut(s) | 159, 507 |
| Eco130I | CCWWGG | 3 cut(s) | 117, 1310, 1526 |
| Eco32I | GATATC | 1 cut(s) | 885 |
| Eco47I | GGWCC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 2 cut(s) | 990, 1643 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 874 |
| EcoO109I | RGGNCCY | 1 cut(s) | 619 |
| EcoRV | GATATC | 1 cut(s) | 885 |
| EcoT14I | CCWWGG | 3 cut(s) | 117, 1310, 1526 |
| ErhI | CCWWGG | 3 cut(s) | 117, 1310, 1526 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 309, 341, 1059, 1091 |
| FauNDI | CATATG | 1 cut(s) | 1200 |
| FbaI | TGATCA | 1 cut(s) | 415 |
| FblI | GTMKAC | 1 cut(s) | 1578 |
| Fnu4HI | GCNGC | 4 cut(s) | 362, 605, 1329, 1332 |
| FokI | GGATG | 7 cut(s) | 190, 874, 1001, 1205, 1364, 1385, 1583 |
| Fsp4HI | GCNGC | 4 cut(s) | 362, 605, 1329, 1332 |
| FspBI | CTAG | 8 cut(s) | 242, 521, 639, 876, 1113, 1133, 1208, 1311 |
| GluI | GCNGC | 4 cut(s) | 362, 605, 1329, 1332 |
| GsaI | CCCAGC | 1 cut(s) | 838 |
| GsuI | CTGGAG | 1 cut(s) | 977 |
| HaeIII | GGCC | 5 cut(s) | 621, 1205, 1301, 1365, 1531 |
| HgaI | GACGC | 2 cut(s) | 941, 1487 |
| Hin1I | GRCGYC | 1 cut(s) | 933 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HindIII | AAGCTT | 1 cut(s) | 463 |
| HinfI | GANTC | 8 cut(s) | 545, 671, 685, 976, 1101, 1283, 1344, 1499 |
| HphI | GGTGA | 2 cut(s) | 181, 520 |
| Hpy166II | GTNNAC | 4 cut(s) | 127, 801, 850, 1579 |
| Hpy188I | TCNGA | 3 cut(s) | 152, 420, 1173 |
| Hpy188III | TCNNGA | 6 cut(s) | 27, 453, 542, 662, 691, 1607 |
| Hpy8I | GTNNAC | 4 cut(s) | 127, 801, 850, 1579 |
| HpyAV | CCTTC | 9 cut(s) | 166, 401, 535, 579, 763, 815, 1079, 1297, 1618 |
| HpyCH4III | ACNGT | 3 cut(s) | 43, 1189, 1601 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 238, 667 |
| HpyCH4V | TGCA | 8 cut(s) | 384, 604, 701, 724, 1079, 1168, 1559, 1651 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 361, 1118, 1657 |
| HpyF3I | CTNAG | 3 cut(s) | 356, 485, 718 |
| HpySE526I | ACGT | 3 cut(s) | 147, 238, 667 |
| Hsp92I | GRCGYC | 1 cut(s) | 933 |
| Ksp22I | TGATCA | 1 cut(s) | 415 |
| Kzo9I | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| LmnI | GCTCC | 1 cut(s) | 958 |
| LpnPI | CCDG | 9 cut(s) | 438, 613, 704, 748, 820, 941, 1026, 1209, 1629 |
| Lsp1109I | GCAGC | 3 cut(s) | 373, 616, 1315 |
| LweI | GCATC | 4 cut(s) | 26, 168, 440, 1177 |
| MaeI | CTAG | 8 cut(s) | 242, 521, 639, 876, 1113, 1133, 1208, 1311 |
| MaeII | ACGT | 3 cut(s) | 147, 238, 667 |
| MaeIII | GTNAC | 6 cut(s) | 368, 824, 895, 1142, 1475, 1595 |
| MalI | GATC | 5 cut(s) | 96, 324, 417, 551, 1005 |
| MboI | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| MboII | GAAGA | 9 cut(s) | 176, 329, 512, 524, 892, 962, 1079, 1451, 1454 |
| MfeI | CAATTG | 1 cut(s) | 212 |
| MflI | RGATCY | 1 cut(s) | 1003 |
| MhlI | GDGCHC | 1 cut(s) | 1223 |
| MlsI | TGGCCA | 1 cut(s) | 1301 |
| MluNI | TGGCCA | 1 cut(s) | 1301 |
| MlyI | GAGTC | 2 cut(s) | 554, 679 |
| MmeI | TCCRAC | 2 cut(s) | 687, 736 |
| MnlI | CCTC | 7 cut(s) | 160, 487, 508, 870, 1075, 1517, 1520 |
| Mox20I | TGGCCA | 1 cut(s) | 1301 |
| MroXI | GAANNNNTTC | 1 cut(s) | 975 |
| MscI | TGGCCA | 1 cut(s) | 1301 |
| MslI | CAYNNNNRTG | 3 cut(s) | 666, 902, 1371 |
| Msp20I | TGGCCA | 1 cut(s) | 1301 |
| MunI | CAATTG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 361, 1118, 1657 |
| NcoI | CCATGG | 1 cut(s) | 117 |
| NdeI | CATATG | 1 cut(s) | 1200 |
| NdeII | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| NlaIV | GGNNCC | 1 cut(s) | 189 |
| NmuCI | GTSAC | 2 cut(s) | 895, 1475 |
| NspI | RCATGY | 1 cut(s) | 1563 |
| NspV | TTCGAA | 3 cut(s) | 613, 855, 948 |
| PagI | TCATGA | 2 cut(s) | 661, 1606 |
| PdmI | GAANNNNTTC | 1 cut(s) | 975 |
| PfeI | GAWTC | 6 cut(s) | 671, 976, 1101, 1283, 1344, 1499 |
| PkrI | GCNGC | 4 cut(s) | 363, 606, 1330, 1333 |
| PleI | GAGTC | 2 cut(s) | 553, 679 |
| PpsI | GAGTC | 2 cut(s) | 553, 679 |
| PshBI | ATTAAT | 1 cut(s) | 1214 |
| PsiI | TTATAA | 1 cut(s) | 1035 |
| PspFI | CCCAGC | 1 cut(s) | 834 |
| PspN4I | GGNNCC | 1 cut(s) | 189 |
| PspPI | GGNCC | 4 cut(s) | 187, 619, 1204, 1363 |
| PsuI | RGATCY | 1 cut(s) | 1003 |
| RsaI | GTAC | 4 cut(s) | 470, 851, 1097, 1603 |
| RsaNI | GTAC | 4 cut(s) | 469, 850, 1096, 1602 |
| RseI | CAYNNNNRTG | 3 cut(s) | 666, 902, 1371 |
| SatI | GCNGC | 4 cut(s) | 362, 605, 1329, 1332 |
| Sau3AI | GATC | 5 cut(s) | 94, 322, 415, 549, 1003 |
| Sau96I | GGNCC | 4 cut(s) | 187, 619, 1204, 1363 |
| ScaI | AGTACT | 1 cut(s) | 1603 |
| SchI | GAGTC | 2 cut(s) | 554, 679 |
| SduI | GDGCHC | 1 cut(s) | 1223 |
| SfaNI | GCATC | 4 cut(s) | 26, 168, 440, 1177 |
| SfcI | CTRYAG | 2 cut(s) | 63, 1434 |
| SfuI | TTCGAA | 3 cut(s) | 613, 855, 948 |
| SinI | GGWCC | 1 cut(s) | 187 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 666, 902, 1371 |
| SmlI | CTYRAG | 2 cut(s) | 137, 542 |
| SmoI | CTYRAG | 2 cut(s) | 137, 542 |
| SpeI | ACTAGT | 1 cut(s) | 1132 |
| SsiI | CCGC | 1 cut(s) | 1331 |
| SspI | AATATT | 1 cut(s) | 866 |
| SspMI | CTAG | 8 cut(s) | 242, 521, 639, 876, 1113, 1133, 1208, 1311 |
| StyI | CCWWGG | 3 cut(s) | 117, 1310, 1526 |
| TaaI | ACNGT | 3 cut(s) | 43, 1189, 1601 |
| TaiI | ACGT | 3 cut(s) | 150, 241, 670 |
| TatI | WGTACW | 2 cut(s) | 849, 1601 |
| TauI | GCSGC | 1 cut(s) | 1334 |
| TfiI | GAWTC | 6 cut(s) | 671, 976, 1101, 1283, 1344, 1499 |
| TscAI | CASTG | 4 cut(s) | 852, 904, 986, 1194 |
| TseFI | GTSAC | 2 cut(s) | 895, 1475 |
| TseI | GCWGC | 3 cut(s) | 361, 604, 1328 |
| Tsp45I | GTSAC | 2 cut(s) | 895, 1475 |
| TspDTI | ATGAA | 8 cut(s) | 369, 663, 678, 1037, 1139, 1209, 1433, 1512 |
| TspGWI | ACGGA | 2 cut(s) | 332, 510 |
| TspRI | CASTG | 4 cut(s) | 852, 904, 986, 1194 |
| VpaK11BI | GGWCC | 1 cut(s) | 187 |
| VspI | ATTAAT | 1 cut(s) | 1214 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 874 |
| XapI | RAATTY | 3 cut(s) | 279, 291, 422 |
| XceI | RCATGY | 1 cut(s) | 1563 |
| XmaJI | CCTAGG | 1 cut(s) | 1310 |
| XmiI | GTMKAC | 1 cut(s) | 1578 |
| XmnI | GAANNNNTTC | 1 cut(s) | 975 |
| XspI | CTAG | 8 cut(s) | 242, 521, 639, 876, 1113, 1133, 1208, 1311 |
| ZrmI | AGTACT | 1 cut(s) | 1603 |