MD03G1218400.v1.1

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000053
Physical Location & Seq
Reverse (-)
30314419 .. 30318857
4439 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1218400.v1.1.491

Sequence Viewer

Length: 1602 bp
ATGTCTGCACCTCAAGCACATCAAACCCCAAAAACGACGACTAATGATGTTAATCGACGTTCAGCAAATTTCTCTTCCACCATTTGGGGCGATTATTTCTTATCATATGCTTCTATTGTGCGAAATTCATTTAGACTAATAGAAACAAATATAGAAGAAGAGCAACGTATTCAAGAACTGAAGGAAAGAGTGACGAGGATGATAATGGCTCCAACGCCTAGTAAATCTTTGAAAAAATTGGAATTGATTGATGCCATTCAGCGCTTAGGCGTCTCCCGTCATTTTGAAAATGAGATTGATCAAGTTTTGCTACAAATTCACAACAACTCATATCACTGTTATTACCAAGGAAACATGTTCAACAAGTTCAAGGACGTCAATGATGCGAAATTTAAGGGATCACTCACGAATGATATCGTCGGACTACTAAGCTTGTACGAAGCTACGCATCTGAGGGTACACGGAGAAGATATACTAGAAGAGGCATTAAACTTCACCACCACTCATCTCGAGTCAGCAGCACATAGTTTAAGCCCCGGGCCACTTTTGCAACAAGTAAAGCATGCATTGTACCAGCCATTCTGGAAGGGCAACCCAAGGCTAGAAGCAAGGCAGTACTTGTCCATCTACCGCGAAAATAATTCACATAATGAGACTCTCCTAACTTTTGCAAAGTTGGATTTCAACCTCTTGCAGAAAGTCCATCAGAAGGAACTAAGTGAAATTACAAGATGGTGGAAGGAGTTGGACTTTGTAAACAAGTTACCGTTTGCAAGGGACAAAGTAGTTGAGAGCTACCTTTGGGCTTTAGGGTGCTACTATGAACCTGAATACTCCTTTGCTAGGATGATATTTGGAAAAGTTACTGCCATCATGGTCGTTATTGATGATATTTATGACGTGTACGGCACATTTGGAGAACTAGAGCTGTTTACTGAAGCTGTTGAAAGGTGGGACATCTCTGCCATGGTTCATCTGCCTGAGCAGTACATGAAAGTCTGTTATCAAGCATTGTTGGATCTCTACGCTGAAATTGAGGAAAAGCTTGGAAACGAGGGAAACTCATATCGCATCCACTATGCGAGAGAAGCACCGCTTATTCTCACAGCACAGCCGCTTATTCTCACAGCAGCTTTTTTTCAAAGCACAGCAATACCAAACCAGCCCTTCACGCTAGCAACCACATCCCTTGTTGGAATGGGAAGTGTTGTTACAAAAGACTCCTTGGATTGGGTGTTTAGTGACCCTCAGATTGTAAAGGCAGCATCATTAATTGGTAGACTCGTGGATGATATGAAGTCTCACAAGTTTGAGCAGAAGAGAGGGCATGTTGCCTCATCTGTGGAATGCTACATGAAAGAACATGAAGCCACGGAGGAACAAGCAATAATCGAACTAAGCAAGCAAGTGAATAATGCATGGAAGGACGTAAACGAAACGTGCCACCGCCCTACCATTTTCCCCATGCAGATAATACTACGAATTGTCAATCTTGCACGAATGATTGAAGTTTTATACAAGCATGACGATGGCTTTACTCATGCTGGAATCTTTCTCAAGGATGTTGTGGTTTCACTCCTTGTCGAATCCGTGCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

534

Amino Acids

61.33

Weight (kDa)

5.78

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 112 2.3e-17 Terpene synthase, N-terminal domain
Terpene_synth PF01397 118 - 190 1.9e-20 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 247 - 476 1.9e-75 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 287 - 356 3.2e-16 Terpene synthase family 2, C-terminal metal binding
Terpene_syn_C_2 PF19086 392 - 476 3.2e-21 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 84
AccI GTMKAC 1 cut(s) 1279
AccII CGCG 1 cut(s) 633
AciI CCGC 4 cut(s) 631, 1094, 1115, 1447
AclWI GGATC 2 cut(s) 406, 1026
AcsI RAATTY 4 cut(s) 67, 124, 315, 389
AcuI CTGAAG 2 cut(s) 200, 957
AcyI GRCGYC 2 cut(s) 270, 375
AfaI GTAC 6 cut(s) 437, 459, 572, 617, 905, 989
AfeI AGCGCT 1 cut(s) 263
AfiI CCNNNNNNNGG 4 cut(s) 84, 709, 843, 1230
AflIII ACRYGT 2 cut(s) 354, 900
AgsI TTSAA 9 cut(s) 173, 232, 287, 361, 370, 685, 947, 1142, 1508
AjiI CACGTC 1 cut(s) 901
AluBI AGCT 7 cut(s) 432, 443, 795, 928, 941, 1045, 1133
AluI AGCT 7 cut(s) 432, 443, 795, 928, 941, 1045, 1133
Alw26I GTCTC 3 cut(s) 277, 647, 1305
AlwI GGATC 2 cut(s) 406, 1026
Ama87I CYCGRG 2 cut(s) 509, 536
Aor51HI AGCGCT 1 cut(s) 263
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 3 cut(s) 518, 1130, 1262
ApoI RAATTY 4 cut(s) 67, 124, 315, 389
AseI ATTAAT 1 cut(s) 1271
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 539
AsuC2I CCSGG 2 cut(s) 537, 538
AsuHPI GGTGA 1 cut(s) 487
AsuNHI GCTAGC 1 cut(s) 1174
AvaI CYCGRG 2 cut(s) 509, 536
BarI GAAGNNNNNNTAC 2 cut(s) 1195, 1227
BauI CACGAG 1 cut(s) 1283
BbvI GCAGC 3 cut(s) 530, 1142, 1274
BccI CCATC 5 cut(s) 632, 711, 726, 878, 1523
BceAI ACGGC 1 cut(s) 922
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 2 cut(s) 537, 538
BcoDI GTCTC 3 cut(s) 277, 647, 1305
BfaI CTAG 6 cut(s) 219, 476, 602, 843, 923, 1175
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 4 cut(s) 519, 1115, 1131, 1263
BlsI GCNGC 4 cut(s) 520, 1116, 1132, 1264
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 2 cut(s) 537, 538
BmeT110I CYCGRG 2 cut(s) 509, 536
BmgBI CACGTC 1 cut(s) 901
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 537, 538
BmsI GCATC 5 cut(s) 241, 373, 457, 1080, 1274
BmtI GCTAGC 1 cut(s) 1178
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
Bpu10I CCTNAGC 2 cut(s) 265, 981
BpuEI CTTGAG 1 cut(s) 1541
BpuMI CCSGG 2 cut(s) 537, 538
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 270, 375
BsaJI CCNNGG 7 cut(s) 346, 535, 536, 596, 966, 1224, 1371
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 709, 843, 1230
Bse8I GATNNNNATC 1 cut(s) 51
BseDI CCNNGG 7 cut(s) 346, 535, 536, 596, 966, 1224, 1371
BseGI GGATG 6 cut(s) 204, 852, 1071, 1184, 1294, 1567
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 4 cut(s) 84, 709, 843, 1230
BseMII CTCAG 3 cut(s) 443, 972, 1262
BseXI GCAGC 3 cut(s) 530, 1142, 1274
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 1 cut(s) 541
BsiHKCI CYCGRG 2 cut(s) 509, 536
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 791, 968
BslI CCNNNNNNNGG 4 cut(s) 84, 709, 843, 1230
BsmAI GTCTC 3 cut(s) 277, 647, 1305
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 2 cut(s) 791, 968
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 1 cut(s) 541
BsoBI CYCGRG 2 cut(s) 509, 536
Bsp143I GATC 3 cut(s) 298, 398, 1018
Bsp19I CCATGG 1 cut(s) 966
BspACI CCGC 4 cut(s) 631, 1094, 1115, 1447
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 3 cut(s) 444, 973, 1261
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 210
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 2 cut(s) 406, 1026
BspQI GCTCTTC 1 cut(s) 153
BssECI CCNNGG 7 cut(s) 346, 535, 536, 596, 966, 1224, 1371
BssMI GATC 3 cut(s) 298, 398, 1018
BssNI GRCGYC 2 cut(s) 270, 375
BssSI CACGAG 1 cut(s) 1283
BssT1I CCWWGG 4 cut(s) 346, 596, 966, 1224
Bst2BI CACGAG 1 cut(s) 1283
Bst4CI ACNGT 2 cut(s) 338, 768
Bst6I CTCTTC 4 cut(s) 79, 153, 474, 1313
BstACI GRCGYC 2 cut(s) 270, 375
BstC8I GCNNGC 3 cut(s) 564, 1176, 1403
BstDEI CTNAG 7 cut(s) 265, 428, 452, 716, 981, 1248, 1397
BstDSI CCRYGG 2 cut(s) 966, 1371
BstENI CCTNNNNNAGG 1 cut(s) 841
BstF5I GGATG 6 cut(s) 204, 852, 1071, 1184, 1294, 1567
BstFNI CGCG 1 cut(s) 633
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 3 cut(s) 301, 401, 1021
BstMAI GTCTC 3 cut(s) 277, 647, 1305
BstMBI GATC 3 cut(s) 298, 398, 1018
BstMWI GCNNNNNNNGC 4 cut(s) 14, 547, 1088, 1171
BstNSI RCATGY 3 cut(s) 358, 566, 1331
BstSCI CCNGG 2 cut(s) 535, 536
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 3 cut(s) 530, 1142, 1274
BstX2I RGATCY 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1018
BsuRI GGCC 1 cut(s) 541
BtgI CCRYGG 2 cut(s) 966, 1371
BtrI CACGTC 1 cut(s) 901
BtsCI GGATG 6 cut(s) 204, 852, 1071, 1184, 1294, 1567
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 564, 1176, 1403
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 539
Cfr9I CCCGGG 1 cut(s) 536
CseI GACGC 1 cut(s) 259
Csp6I GTAC 6 cut(s) 436, 458, 571, 616, 904, 988
CspCI CAANNNNNGTGG 2 cut(s) 1171, 1206
CviQI GTAC 6 cut(s) 436, 458, 571, 616, 904, 988
DdeI CTNAG 7 cut(s) 265, 428, 452, 716, 981, 1248, 1397
DpnI GATC 3 cut(s) 300, 400, 1020
DpnII GATC 3 cut(s) 298, 398, 1018
Eam1104I CTCTTC 4 cut(s) 79, 153, 474, 1313
EarI CTCTTC 4 cut(s) 79, 153, 474, 1313
Eco130I CCWWGG 4 cut(s) 346, 596, 966, 1224
Eco32I GATATC 1 cut(s) 415
Eco47III AGCGCT 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 200, 957
Eco88I CYCGRG 2 cut(s) 509, 536
EcoNI CCTNNNNNAGG 1 cut(s) 841
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 4 cut(s) 346, 596, 966, 1224
EcoT22I ATGCAT 2 cut(s) 568, 1420
ErhI CCWWGG 4 cut(s) 346, 596, 966, 1224
Esp3I CGTCTC 1 cut(s) 277
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FaqI GGGAC 2 cut(s) 791, 968
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 1279
Fnu4HI GCNGC 4 cut(s) 519, 1115, 1131, 1263
FokI GGATG 6 cut(s) 211, 859, 1058, 1171, 1301, 1574
Fsp4HI GCNGC 4 cut(s) 519, 1115, 1131, 1263
FspBI CTAG 6 cut(s) 219, 476, 602, 843, 923, 1175
GlaI GCGC 1 cut(s) 263
GluI GCNGC 4 cut(s) 519, 1115, 1131, 1263
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 1 cut(s) 541
HapII CCGG 1 cut(s) 537
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 2 cut(s) 270, 375
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 430, 1043
HinfI GANTC 6 cut(s) 512, 655, 1220, 1281, 1548, 1586
HpaII CCGG 1 cut(s) 537
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 6 cut(s) 460, 757, 904, 933, 1280, 1432
Hpy188I TCNGA 4 cut(s) 422, 453, 708, 1251
Hpy188III TCNNGA 4 cut(s) 173, 406, 509, 583
Hpy8I GTNNAC 6 cut(s) 460, 757, 904, 933, 1280, 1432
Hpy99I CGWCG 3 cut(s) 40, 60, 422
HpyAV CCTTC 6 cut(s) 175, 580, 703, 733, 1177, 1417
HpyCH4III ACNGT 2 cut(s) 338, 768
HpyCH4IV ACGT 6 cut(s) 58, 166, 375, 900, 1428, 1439
HpyCH4V TGCA 9 cut(s) 8, 550, 566, 671, 694, 773, 1418, 1468, 1496
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 547, 1088, 1171
HpyF3I CTNAG 7 cut(s) 265, 428, 452, 716, 981, 1248, 1397
HpySE526I ACGT 6 cut(s) 58, 166, 375, 900, 1428, 1439
Hsp92I GRCGYC 2 cut(s) 270, 375
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 298, 398, 1018
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 550, 568, 587, 840, 993, 1175, 1530
Lsp1109I GCAGC 3 cut(s) 530, 1142, 1274
LweI GCATC 5 cut(s) 241, 373, 457, 1080, 1274
MaeI CTAG 6 cut(s) 219, 476, 602, 843, 923, 1175
MaeII ACGT 6 cut(s) 58, 166, 375, 900, 1428, 1439
MaeIII GTNAC 5 cut(s) 190, 762, 862, 1210, 1241
MalI GATC 3 cut(s) 300, 400, 1020
MboI GATC 3 cut(s) 298, 398, 1018
MboII GAAGA 6 cut(s) 66, 167, 170, 479, 491, 1330
MflI RGATCY 1 cut(s) 1018
MlyI GAGTC 4 cut(s) 521, 649, 1214, 1275
MmeI TCCRAC 6 cut(s) 236, 400, 657, 726, 996, 1174
Mph1103I ATGCAT 2 cut(s) 568, 1420
MseI TTAA 5 cut(s) 51, 393, 488, 530, 1271
MslI CAYNNNNRTG 1 cut(s) 1527
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 2 cut(s) 537, 538
Mva1269I GAATGC 1 cut(s) 1352
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 4 cut(s) 14, 547, 1088, 1171
NciI CCSGG 2 cut(s) 537, 538
NcoI CCATGG 1 cut(s) 966
NdeI CATATG 1 cut(s) 106
NdeII GATC 3 cut(s) 298, 398, 1018
NheI GCTAGC 1 cut(s) 1174
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 190, 1241
NsiI ATGCAT 2 cut(s) 568, 1420
NspI RCATGY 3 cut(s) 358, 566, 1331
PaeI GCATGC 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 509
PciI ACATGT 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 153
PctI GAATGC 1 cut(s) 1352
PfeI GAWTC 2 cut(s) 1548, 1586
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 4 cut(s) 520, 1116, 1132, 1264
PleI GAGTC 4 cut(s) 520, 649, 1214, 1275
PpsI GAGTC 4 cut(s) 520, 649, 1214, 1275
PscI ACATGT 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 1271
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 539
PsuI RGATCY 1 cut(s) 1018
RsaI GTAC 6 cut(s) 437, 459, 572, 617, 905, 989
RsaNI GTAC 6 cut(s) 436, 458, 571, 616, 904, 988
RseI CAYNNNNRTG 1 cut(s) 1527
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 5 cut(s) 51, 393, 488, 530, 1271
SatI GCNGC 4 cut(s) 519, 1115, 1131, 1263
Sau3AI GATC 3 cut(s) 298, 398, 1018
Sau96I GGNCC 1 cut(s) 539
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 4 cut(s) 521, 649, 1214, 1275
ScrFI CCNGG 2 cut(s) 537, 538
SfaNI GCATC 5 cut(s) 241, 373, 457, 1080, 1274
Sfr274I CTCGAG 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 509
SmaI CCCGGG 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 1527
SmlI CTYRAG 3 cut(s) 12, 509, 1556
SmoI CTYRAG 3 cut(s) 12, 509, 1556
SphI GCATGC 1 cut(s) 566
SsiI CCGC 4 cut(s) 631, 1094, 1115, 1447
SspMI CTAG 6 cut(s) 219, 476, 602, 843, 923, 1175
StyD4I CCNGG 2 cut(s) 535, 536
StyI CCWWGG 4 cut(s) 346, 596, 966, 1224
TaaI ACNGT 2 cut(s) 338, 768
TaiI ACGT 6 cut(s) 61, 169, 378, 903, 1431, 1442
TaqI TCGA 4 cut(s) 55, 510, 1392, 1584
TatI WGTACW 2 cut(s) 615, 987
TauI GCSGC 1 cut(s) 1117
TfiI GAWTC 2 cut(s) 1548, 1586
Tru1I TTAA 5 cut(s) 51, 393, 488, 530, 1271
Tru9I TTAA 5 cut(s) 51, 393, 488, 530, 1271
TscAI CASTG 1 cut(s) 341
TseFI GTSAC 2 cut(s) 190, 1241
TseI GCWGC 3 cut(s) 518, 1130, 1262
Tsp45I GTSAC 2 cut(s) 190, 1241
TspDTI ATGAA 7 cut(s) 117, 837, 962, 1007, 1310, 1370, 1380
TspGWI ACGGA 3 cut(s) 477, 1388, 1579
TspMI CCCGGG 1 cut(s) 536
TspRI CASTG 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 84
VspI ATTAAT 1 cut(s) 1271
XagI CCTNNNNNAGG 1 cut(s) 841
XapI RAATTY 4 cut(s) 67, 124, 315, 389
XceI RCATGY 3 cut(s) 358, 566, 1331
XhoI CTCGAG 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 1279
XspI CTAG 6 cut(s) 219, 476, 602, 843, 923, 1175
ZraI GACGTC 1 cut(s) 376
ZrmI AGTACT 1 cut(s) 617
Zsp2I ATGCAT 2 cut(s) 568, 1420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.