Rh5CG359600

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000053
Physical Location & Seq
Reverse (-)
42750077 .. 42752822
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG359600.1

Sequence Viewer

Length: 1683 bp
ATGGCTGCTCAAATACTAGAATCTGAAGCTCCAACCCAGAATGCCACTCCTGAGGTTAATCGACTTTCAGCTAATTTTTCTCCTAGCATTTGGGGTGATCATTTTCTCTCATATGCTTCTAAGGAAAGCAATATTGAAACTGAGCAACATCTCCATGAATTCAAGGCAGAAGTGAAGACGATGCTGAAGGCTCCGGTTGAAAAGCTTTCACAAAAGTTGGATTTGATTGATGACATTCAGCGCTTGGGAGTTTTCAGCCATTTTGAAAATGAAATCCACGAAATTTTACAGCAAATTCACAACAATTCTTACGTCAACTGTGACGACCTAGAGAGCGATGATGAGCTCTACATTGTGGCGCTCCGTTTTCGATTACTCAGACAACAGGGTTATAAAGTTTCATGCAACGTGTTTAGGAAGTTCATGGAAAAGGATGGAAACTTCAAGGAATCACTTATTGAAGATGTCCCGGGACTATTAAGTTTGTATGAAGCCACACATCTTAGGACACACGGAGAAGAACTGCTTGATGATGCATTGACCTTCACCTCCACTCATCTTGAGTCGGCAACTCGCCATAGTTTAAACCCCCTGGTTATGAAGCGAGTAACTCATGCCTTGTATCAGCCTCTCTGGAAGGGTGTAACTAGACTCGAAGCCAGACATCACTTGTCTGCTTACCCGGATCACAATTCACATAATGAAACACTCTTGAATTTTGCAAAGTTGGATTTCAATCTACTGCAGCAAGTCCATCAGAAAGAACTAAGTGATATTGCAAGGTGGTGGAAGGACTTGGACTTTGCAAACAAGCTGCCGTTTGCAAGAGACCGAGTGGTTGAGTGCTACTTCTGGACTTTGGGAGTCTACTTTGAGCCCCAATATCACTTTGGTAGGAAGACGTTTTGCAAAGTTATTGCCATGACATCCATTATTGACGACATTTATGACGTGTATGGCACGCTTGAAGAAGCAGAACTATTTACTGAAGCTATTGAGAGATGGGATATCTCTGCCATGGATATACTGCCCGAGTATATGAAAATCTGTTACCAAGCACTGTTGGATGTCTATCGTGAAATGGAAGAAAAGCTTGCAATTGAGGGCAACTTATATGTCATTCACTACGCGAGAGAATCAATGAAAATCCAGGTTAGAGCTTACTTCCGAGAAGCCAAATGGTTCCACCAGAAATACACGCCAACCTTTGATGAATATATGTCATTAGCACTTGTTACATCTGGCTACTTTATGCTAGCAACCATATCCTTTCTGGGAATGGGGGATATTGTCACAAGAGACTCCTTTGAGTGGTTGTTCAATGGTCCTAAAATTGTCAAGGCTTCAGAGTTAGTTGGCAGACTCATGGATGACATGGCTTCTCATAAGTTTGAGCAAAAGAGAGGACATGTCGCCTCAGCTGTGGAATGCTACATGAAAGAATATGGTGTCACAGAAGAAGAAGCAAAAGTCGCACTGACTAAACAAGTGGATGATGCTTGGAAGGACATAAATGAAGAATTGCTGAAGATTAACACTATTCCAAGGCCCCTCCTATTGCGAGTTCTCAATCTCTCGCGGGTGATTGAAGTTGTATACAAGAATGAAGATGGGTATACTCATGCAGGTGGTGTGCTCAAGGGTTTTGTGGCTTCTGTGCTTATCAAACCTGTGCCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

560

Amino Acids

64.97

Weight (kDa)

5.44

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 207 9.3e-57 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 264 - 503 7.1e-106 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 304 - 503 1.1e-63 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AarI CACCTGC 1 cut(s) 1616
Acc36I ACCTGC 1 cut(s) 1616
AccI GTMKAC 3 cut(s) 867, 1596, 1616
AccII CGCG 2 cut(s) 1130, 1579
AciI CCGC 1 cut(s) 1579
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 4 cut(s) 158, 282, 294, 715
AcuI CTGAAG 5 cut(s) 45, 206, 1008, 1329, 1547
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 1311
AflIII ACRYGT 3 cut(s) 408, 951, 1408
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 2 cut(s) 591, 1149
AluBI AGCT 9 cut(s) 29, 71, 205, 346, 814, 992, 1093, 1160, 1421
AluI AGCT 9 cut(s) 29, 71, 205, 346, 814, 992, 1093, 1160, 1421
Alw21I GWGCWC 2 cut(s) 348, 1638
Alw26I GTCTC 2 cut(s) 822, 1293
AlwI GGATC 1 cut(s) 693
Ama87I CYCGRG 2 cut(s) 469, 1031
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 1 cut(s) 1547
ApeKI GCWGC 3 cut(s) 5, 745, 814
ApoI RAATTY 4 cut(s) 158, 282, 294, 715
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AspLEI GCGC 2 cut(s) 243, 361
AspS9I GGNCC 2 cut(s) 1325, 1548
AsuC2I CCSGG 3 cut(s) 470, 471, 683
AsuHPI GGTGA 3 cut(s) 107, 538, 1594
AsuNHI GCTAGC 1 cut(s) 1255
AvaI CYCGRG 2 cut(s) 469, 1031
AvaII GGWCC 1 cut(s) 1325
AxyI CCTNAGG 1 cut(s) 51
BanII GRGCYC 2 cut(s) 348, 879
BbsI GAAGAC 2 cut(s) 182, 905
Bbv12I GWGCWC 2 cut(s) 348, 1638
BbvCI CCTCAGC 1 cut(s) 1417
BbvI GCAGC 2 cut(s) 757, 801
BccI CCATC 4 cut(s) 428, 762, 996, 1604
BceAI ACGGC 1 cut(s) 802
BciT130I CCWGG 2 cut(s) 593, 1151
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 3 cut(s) 470, 471, 683
BcoDI GTCTC 2 cut(s) 822, 1293
BfaI CTAG 5 cut(s) 17, 84, 329, 648, 1256
BfmI CTRYAG 1 cut(s) 743
BfoI RGCGCY 2 cut(s) 244, 362
BfuAI ACCTGC 1 cut(s) 1616
BisI GCNGC 3 cut(s) 6, 746, 815
BlsI GCNGC 3 cut(s) 7, 747, 816
Bme1390I CCNGG 5 cut(s) 470, 471, 593, 683, 1151
Bme18I GGWCC 1 cut(s) 1325
BmeT110I CYCGRG 2 cut(s) 469, 1031
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 2 cut(s) 1325, 1548
BmiI GGNNCC 3 cut(s) 192, 1184, 1550
BmrFI CCNGG 5 cut(s) 470, 471, 593, 683, 1151
BmsI GCATC 3 cut(s) 171, 523, 1486
BmtI GCTAGC 1 cut(s) 1259
BpiI GAAGAC 2 cut(s) 182, 905
Bpu10I CCTNAGC 1 cut(s) 1417
BpuEI CTTGAG 2 cut(s) 581, 1622
BpuMI CCSGG 3 cut(s) 470, 471, 683
BsaBI GATNNNNATC 2 cut(s) 735, 1071
BsaI GGTCTC 1 cut(s) 822
BsaJI CCNNGG 4 cut(s) 469, 591, 1017, 1544
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 1311
Bse21I CCTNAGG 1 cut(s) 51
Bse8I GATNNNNATC 2 cut(s) 735, 1071
BseBI CCWGG 2 cut(s) 593, 1151
BseDI CCNNGG 4 cut(s) 469, 591, 1017, 1544
BseGI GGATG 5 cut(s) 439, 926, 1072, 1375, 1498
BseJI GATNNNNATC 2 cut(s) 735, 1071
BseLI CCNNNNNNNGG 1 cut(s) 1311
BseMII CTCAG 4 cut(s) 42, 132, 391, 1431
BseXI GCAGC 2 cut(s) 757, 801
Bsh1236I CGCG 2 cut(s) 1130, 1579
BshFI GGCC 1 cut(s) 1549
BsiHKAI GWGCWC 2 cut(s) 348, 1638
BsiHKCI CYCGRG 2 cut(s) 469, 1031
BsiSI CCGG 3 cut(s) 194, 470, 683
BslFI GGGAC 2 cut(s) 452, 486
BslI CCNNNNNNNGG 1 cut(s) 1311
BsmAI GTCTC 2 cut(s) 822, 1293
BsmFI GGGAC 2 cut(s) 452, 486
BsmI GAATGC 2 cut(s) 46, 1433
BsnI GGCC 1 cut(s) 1549
Bso31I GGTCTC 1 cut(s) 822
BsoBI CYCGRG 2 cut(s) 469, 1031
Bsp1286I GDGCHC 3 cut(s) 348, 879, 1638
Bsp143I GATC 2 cut(s) 97, 685
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 1 cut(s) 1579
BspANI GGCC 1 cut(s) 1549
BspCNI CTCAG 4 cut(s) 43, 133, 390, 1430
BspFNI CGCG 2 cut(s) 1130, 1579
BspLI GGNNCC 3 cut(s) 192, 1184, 1550
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 1616
BspOI GCTAGC 1 cut(s) 1259
BspPI GGATC 1 cut(s) 693
BspTNI GGTCTC 1 cut(s) 822
BssECI CCNNGG 4 cut(s) 469, 591, 1017, 1544
BssMI GATC 2 cut(s) 97, 685
BssNAI GTATAC 2 cut(s) 1597, 1617
BssT1I CCWWGG 2 cut(s) 1017, 1544
Bst1107I GTATAC 2 cut(s) 1597, 1617
Bst2UI CCWGG 2 cut(s) 593, 1151
Bst4CI ACNGT 2 cut(s) 320, 1062
BstC8I GCNNGC 3 cut(s) 962, 1095, 1257
BstDEI CTNAG 7 cut(s) 51, 120, 141, 377, 503, 767, 1417
BstDSI CCRYGG 1 cut(s) 1017
BstF5I GGATG 5 cut(s) 439, 926, 1072, 1375, 1498
BstFNI CGCG 2 cut(s) 1130, 1579
BstH2I RGCGCY 2 cut(s) 244, 362
BstHHI GCGC 2 cut(s) 243, 361
BstKTI GATC 2 cut(s) 100, 688
BstMAI GTCTC 2 cut(s) 822, 1293
BstMBI GATC 2 cut(s) 97, 685
BstMWI GCNNNNNNNGC 1 cut(s) 1472
BstNI CCWGG 2 cut(s) 593, 1151
BstNSI RCATGY 1 cut(s) 1412
BstSCI CCNGG 5 cut(s) 468, 469, 591, 681, 1149
BstSFI CTRYAG 1 cut(s) 743
BstUI CGCG 2 cut(s) 1130, 1579
BstV1I GCAGC 2 cut(s) 757, 801
BstV2I GAAGAC 2 cut(s) 182, 905
BstZ17I GTATAC 2 cut(s) 1597, 1617
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 1549
BtgI CCRYGG 1 cut(s) 1017
BtgZI GCGATG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 5 cut(s) 439, 926, 1072, 1375, 1498
BtsIMutI CAGTG 2 cut(s) 1058, 1475
BveI ACCTGC 1 cut(s) 1616
Cac8I GCNNGC 3 cut(s) 962, 1095, 1257
CfoI GCGC 2 cut(s) 243, 361
Cfr13I GGNCC 2 cut(s) 1325, 1548
Cfr9I CCCGGG 1 cut(s) 469
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
DdeI CTNAG 7 cut(s) 51, 120, 141, 377, 503, 767, 1417
DpnI GATC 2 cut(s) 99, 687
DpnII GATC 2 cut(s) 97, 685
DraI TTTAAA 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 2 cut(s) 1017, 1544
Eco24I GRGCYC 2 cut(s) 348, 879
Eco31I GGTCTC 1 cut(s) 822
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 1325
Eco47III AGCGCT 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 5 cut(s) 45, 206, 1008, 1329, 1547
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 2 cut(s) 469, 1031
EcoICRI GAGCTC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 1548
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 591, 1149
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 2 cut(s) 1017, 1544
EcoT22I ATGCAT 1 cut(s) 538
EcoT38I GRGCYC 2 cut(s) 348, 879
ErhI CCWWGG 2 cut(s) 1017, 1544
FalI AAGNNNNNCTT 4 cut(s) 510, 542, 1077, 1109
FaqI GGGAC 2 cut(s) 452, 486
FauI CCCGC 1 cut(s) 1572
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 3 cut(s) 867, 1596, 1616
Fnu4HI GCNGC 3 cut(s) 6, 746, 815
FokI GGATG 5 cut(s) 446, 913, 1079, 1382, 1505
FriOI GRGCYC 2 cut(s) 348, 879
Fsp4HI GCNGC 3 cut(s) 6, 746, 815
FspBI CTAG 5 cut(s) 17, 84, 329, 648, 1256
GlaI GCGC 2 cut(s) 242, 360
GluI GCNGC 3 cut(s) 6, 746, 815
HaeII RGCGCY 2 cut(s) 244, 362
HaeIII GGCC 1 cut(s) 1549
HapII CCGG 3 cut(s) 194, 470, 683
HhaI GCGC 2 cut(s) 243, 361
Hin6I GCGC 2 cut(s) 241, 359
HinP1I GCGC 2 cut(s) 241, 359
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 203, 1091
HinfI GANTC 8 cut(s) 20, 449, 563, 651, 864, 1136, 1301, 1362
HpaII CCGG 3 cut(s) 194, 470, 683
HphI GGTGA 3 cut(s) 107, 538, 1594
Hpy166II GTNNAC 4 cut(s) 316, 868, 1597, 1617
Hpy188I TCNGA 5 cut(s) 25, 380, 759, 1169, 1348
Hpy188III TCNNGA 6 cut(s) 50, 560, 634, 712, 853, 1076
Hpy8I GTNNAC 4 cut(s) 316, 868, 1597, 1617
HpyAV CCTTC 5 cut(s) 181, 553, 631, 784, 1498
HpyCH4III ACNGT 2 cut(s) 320, 1062
HpyCH4IV ACGT 4 cut(s) 312, 408, 902, 951
HpyF10VI GCNNNNNNNGC 1 cut(s) 1472
HpyF3I CTNAG 7 cut(s) 51, 120, 141, 377, 503, 767, 1417
HpySE526I ACGT 4 cut(s) 312, 408, 902, 951
HspAI GCGC 2 cut(s) 241, 359
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 97, 685
LmnI GCTCC 3 cut(s) 34, 196, 366
Lsp1109I GCAGC 2 cut(s) 757, 801
LweI GCATC 3 cut(s) 171, 523, 1486
MaeI CTAG 5 cut(s) 17, 84, 329, 648, 1256
MaeII ACGT 4 cut(s) 312, 408, 902, 951
MaeIII GTNAC 7 cut(s) 320, 607, 643, 1049, 1234, 1291, 1450
MalI GATC 2 cut(s) 99, 687
MboI GATC 2 cut(s) 97, 685
MfeI CAATTG 1 cut(s) 1098
MhlI GDGCHC 3 cut(s) 348, 879, 1638
MlyI GAGTC 5 cut(s) 572, 645, 873, 1295, 1356
MmeI TCCRAC 4 cut(s) 56, 198, 708, 1044
MnlI CCTC 7 cut(s) 46, 559, 639, 1096, 1397, 1426, 1562
Mph1103I ATGCAT 1 cut(s) 538
MseI TTAA 4 cut(s) 57, 479, 584, 1533
MslI CAYNNNNRTG 2 cut(s) 153, 1626
MspA1I CMGCKG 1 cut(s) 1421
MspI CCGG 3 cut(s) 194, 470, 683
MspR9I CCNGG 5 cut(s) 470, 471, 593, 683, 1151
MssI GTTTAAAC 1 cut(s) 585
MunI CAATTG 1 cut(s) 1098
Mva1269I GAATGC 2 cut(s) 46, 1433
MvaI CCWGG 2 cut(s) 593, 1151
MvnI CGCG 2 cut(s) 1130, 1579
MwoI GCNNNNNNNGC 1 cut(s) 1472
NciI CCSGG 3 cut(s) 470, 471, 683
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 97, 685
NheI GCTAGC 1 cut(s) 1255
NlaIV GGNNCC 3 cut(s) 192, 1184, 1550
NmuCI GTSAC 3 cut(s) 320, 1291, 1450
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 1 cut(s) 1412
PaqCI CACCTGC 1 cut(s) 1616
PciI ACATGT 1 cut(s) 1408
PctI GAATGC 2 cut(s) 46, 1433
PfeI GAWTC 3 cut(s) 20, 449, 1136
PkrI GCNGC 3 cut(s) 7, 747, 816
PleI GAGTC 5 cut(s) 571, 645, 872, 1295, 1356
PmeI GTTTAAAC 1 cut(s) 585
PpsI GAGTC 5 cut(s) 571, 645, 872, 1295, 1356
PscI ACATGT 1 cut(s) 1408
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 591, 1149
PspGI CCWGG 2 cut(s) 591, 1149
PspN4I GGNNCC 3 cut(s) 192, 1184, 1550
PspPI GGNCC 2 cut(s) 1325, 1548
PstI CTGCAG 1 cut(s) 747
PvuII CAGCTG 1 cut(s) 1421
RseI CAYNNNNRTG 2 cut(s) 153, 1626
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 57, 479, 584, 1533
SatI GCNGC 3 cut(s) 6, 746, 815
Sau3AI GATC 2 cut(s) 97, 685
Sau96I GGNCC 2 cut(s) 1325, 1548
SchI GAGTC 5 cut(s) 572, 645, 873, 1295, 1356
ScrFI CCNGG 5 cut(s) 470, 471, 593, 683, 1151
SduI GDGCHC 3 cut(s) 348, 879, 1638
SfaNI GCATC 3 cut(s) 171, 523, 1486
SfcI CTRYAG 1 cut(s) 743
SinI GGWCC 1 cut(s) 1325
SmaI CCCGGG 1 cut(s) 471
SmiMI CAYNNNNRTG 2 cut(s) 153, 1626
SmlI CTYRAG 2 cut(s) 560, 1637
SmoI CTYRAG 2 cut(s) 560, 1637
SsiI CCGC 1 cut(s) 1579
SspI AATATT 1 cut(s) 133
SspMI CTAG 5 cut(s) 17, 84, 329, 648, 1256
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 5 cut(s) 468, 469, 591, 681, 1149
StyI CCWWGG 2 cut(s) 1017, 1544
TaaI ACNGT 2 cut(s) 320, 1062
TaiI ACGT 4 cut(s) 315, 411, 905, 954
TaqI TCGA 3 cut(s) 61, 370, 654
TaqII GACCGA 1 cut(s) 846
TfiI GAWTC 3 cut(s) 20, 449, 1136
Tru1I TTAA 4 cut(s) 57, 479, 584, 1533
Tru9I TTAA 4 cut(s) 57, 479, 584, 1533
TscAI CASTG 2 cut(s) 1065, 1482
TseFI GTSAC 3 cut(s) 320, 1291, 1450
TseI GCWGC 3 cut(s) 5, 745, 814
Tsp45I GTSAC 3 cut(s) 320, 1291, 1450
TspGWI ACGGA 2 cut(s) 353, 528
TspMI CCCGGG 1 cut(s) 469
TspRI CASTG 2 cut(s) 1065, 1482
VpaK11BI GGWCC 1 cut(s) 1325
XapI RAATTY 4 cut(s) 158, 282, 294, 715
XceI RCATGY 1 cut(s) 1412
XcmI CCANNNNNNNNNTGG 2 cut(s) 887, 1270
XmaI CCCGGG 1 cut(s) 469
XmiI GTMKAC 3 cut(s) 867, 1596, 1616
XspI CTAG 5 cut(s) 17, 84, 329, 648, 1256
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.