Rh5CG423700

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000053
Physical Location & Seq
Reverse (-)
58573620 .. 58578712
5093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG423700.1

Sequence Viewer

Length: 1527 bp
ATGTCTTCACAAGTTTTAGCATCTCAATCTCAAGCTCCATATACCAGACCTTCAGCAAATTACACTCCAAGCATTTGGGGTGATCATTTTCTCTCTTATGCTAAGGCGGAAGTGGACTTTAATCTCGAGCAACGAGTCCAAGAACTTAAAAGAGAAGTGAAAATGATCCTCATGGTGCCAGCAAAAGAGCCTTCACAAAAATTGGACTTAGTTGATGACATTCAGCGCCTGGGCATATCTTACCATTTTGAAAATGAGATCGATGAAATTCTGAAACAAATTTACCAGACTACTTACGGTAGTGATGTGGAATATGATGAGGACCTTTACACTACTGCTCTTTGTTTTCGGTTACTTAGACAACACGGTTATAATGTTTCAAGTGATATGTTCAACAAGTACTTCAAGGAGGGTAATGATGAGAAATTTAAGGAATCTCTTTTGAGTGATGTATCAGGACTATTAAGTTTGTACGAAGCCACCCATCTTAGGATACACGGAGAAGACATACTCGAAGAGGCACTAGCCTTCACCACCACACATCTCGAGTCGATGAAAGACAATTTAAGCCCTCCACTTTCGAAACAACTCCATCAAAACGAACTTTGTGAAATTTCAAGGTGGTGGAAGGACTTGGACGTGAGAAACGAGCTGCCGTTTACAAGAGACAGAGTTACCGAAGTTTACTTCTGCTGGGCTTCATCAGTCTGCTTTGAACCTGAATATTCCTTTGCTAGGAGGACATTATGCAAAGTTACTGCCCTGGCATCCATTCTCGATGACATTTATGATTTGTATGGCACATTCGAAGAACTAGAGCTCTTTACTAAAGCTATTGAGAGGTGGGATATATGTTTCATGGATGCACTGCCAAGCTATATGAAAGTCTATTATACGGCACTGTTAGACGTGTATACTGTAGTTGAAGAAGAGCTTGCAAAGGAGGGAAAATTGTATCGAATCCACTATGCCATAGAAGCTATGAAAAAGCTAGCTAAATGTTACTTTCTTGAAGCGAAATGGTTCCACCAGAAACATGTACCAACAGCGGATGAGTATATTGCCCTATCATCACTGACCTCAGGCTACCCGCTGCTTGTAACAACCTCTTTTGTTACAATGGGAGATATTGCTACACAAGATTCCTTTGACTGGTTGGCCACTTATCCCAAACCTGTGAAAGGGTGTGCAGTAGTTGCCAGACTTATGGATGACTTAGTGTCTCACAAGTTTGAGCAAAAAAGAGGACATGTTGCGTCAGCTGTAGTGTGCTACATGAAAGAATTTGGTGCCACAGAAGAAGAAGCAATAATTGCAATGCGTAGAAAAGTGAGTGGCGCATGGAAGGACATAAACGAATCGTTCCTCTTCCCCAATGCCATTTCAAGGCCACTACTGACTCGAATTCTTAATTTAGCATGCGTCATGGATGTTGTTTACAAGAATGAAGATGGTTACACTACTGATCAGCATGGTATACTCAAGGATCTTATAACTTCTACGCTTGTCCAACAAGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

508

Amino Acids

58.57

Weight (kDa)

5.06

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 25 - 197 5.5e-59 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 210 - 450 5.4e-90 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 251 - 450 1.6e-58 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 372, 1493
AccB1I GGYRCC 2 cut(s) 175, 1289
AccI GTMKAC 2 cut(s) 914, 1477
AciI CCGC 3 cut(s) 107, 1049, 1091
AclWI GGATC 2 cut(s) 160, 1494
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 6 cut(s) 267, 279, 425, 612, 1283, 1404
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 3 cut(s) 401, 473, 1041
AfiI CCNNNNNNNGG 5 cut(s) 489, 735, 1152, 1181, 1386
AflIII ACRYGT 3 cut(s) 909, 1036, 1249
AgsI TTSAA 9 cut(s) 251, 381, 394, 406, 618, 716, 926, 1013, 1386
AhdI GACNNNNNGTC 1 cut(s) 1219
AjiI CACGTC 2 cut(s) 640, 910
AjnI CCWGG 2 cut(s) 228, 762
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 2 cut(s) 660, 1227
AlwI GGATC 2 cut(s) 160, 1494
AlwNI CAGNNNCTG 1 cut(s) 229
Ama87I CYCGRG 2 cut(s) 125, 545
AoxI GGCC 2 cut(s) 1158, 1388
ApeKI GCWGC 2 cut(s) 652, 1093
ApoI RAATTY 6 cut(s) 267, 279, 425, 612, 1283, 1404
Asp700I GAANNNNTTC 1 cut(s) 1022
AspLEI GCGC 2 cut(s) 228, 1340
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 92, 523
AsuII TTCGAA 2 cut(s) 581, 807
AsuNHI GCTAGC 1 cut(s) 991
AvaI CYCGRG 2 cut(s) 125, 545
AvaII GGWCC 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 1081
BalI TGGCCA 1 cut(s) 1160
BanI GGYRCC 2 cut(s) 175, 1289
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 2 cut(s) 639, 1080
BccI CCATC 3 cut(s) 492, 600, 1445
BceAI ACGGC 2 cut(s) 640, 912
BciT130I CCWGG 2 cut(s) 230, 764
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 2 cut(s) 82, 1465
BcoDI GTCTC 2 cut(s) 660, 1227
BfaI CTAG 4 cut(s) 524, 735, 815, 992
BfmI CTRYAG 2 cut(s) 918, 1263
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 2 cut(s) 653, 1094
BlsI GCNGC 2 cut(s) 654, 1095
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 2 cut(s) 230, 764
Bme18I GGWCC 1 cut(s) 322
BmeRI GACNNNNNGTC 1 cut(s) 1219
BmeT110I CYCGRG 2 cut(s) 125, 545
BmgBI CACGTC 2 cut(s) 640, 910
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 3 cut(s) 177, 1025, 1291
BmrFI CCNGG 2 cut(s) 230, 764
BmsI GCATC 3 cut(s) 29, 776, 853
BmtI GCTAGC 1 cut(s) 995
BpiI GAAGAC 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 2 cut(s) 581, 807
BpuEI CTTGAG 2 cut(s) 15, 1466
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 229, 762
Bsc4I CCNNNNNNNGG 5 cut(s) 489, 735, 1152, 1181, 1386
Bse1I ACTGG 1 cut(s) 1157
Bse21I CCTNAGG 1 cut(s) 1081
Bse3DI GCAATG 1 cut(s) 1323
BseBI CCWGG 2 cut(s) 230, 764
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 229, 762
BseGI GGATG 5 cut(s) 767, 868, 1057, 1216, 1435
BseLI CCNNNNNNNGG 5 cut(s) 489, 735, 1152, 1181, 1386
BseMI GCAATG 1 cut(s) 1323
BseMII CTCAG 1 cut(s) 1095
BseNI ACTGG 1 cut(s) 1157
BseXI GCAGC 2 cut(s) 639, 1080
BseYI CCCAGC 1 cut(s) 693
BsgI GTGCAG 1 cut(s) 1209
BshFI GGCC 2 cut(s) 1160, 1390
BshNI GGYRCC 2 cut(s) 175, 1289
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 2 cut(s) 125, 545
BslI CCNNNNNNNGG 5 cut(s) 489, 735, 1152, 1181, 1386
BsmAI GTCTC 2 cut(s) 660, 1227
BsnI GGCC 2 cut(s) 1160, 1390
BsoBI CYCGRG 2 cut(s) 125, 545
Bsp119I TTCGAA 2 cut(s) 581, 807
Bsp1286I GDGCHC 1 cut(s) 822
Bsp143I GATC 5 cut(s) 82, 165, 258, 1465, 1486
BspACI CCGC 3 cut(s) 107, 1049, 1091
BspANI GGCC 2 cut(s) 1160, 1390
BspCNI CTCAG 1 cut(s) 1094
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 177, 1025, 1291
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 2 cut(s) 160, 1494
BspQI GCTCTTC 1 cut(s) 924
BspT104I TTCGAA 2 cut(s) 581, 807
BspT107I GGYRCC 2 cut(s) 175, 1289
BsrDI GCAATG 1 cut(s) 1323
BsrI ACTGG 1 cut(s) 1157
BssECI CCNNGG 2 cut(s) 229, 762
BssMI GATC 5 cut(s) 82, 165, 258, 1465, 1486
BssNAI GTATAC 2 cut(s) 915, 1478
Bst1107I GTATAC 2 cut(s) 915, 1478
Bst2UI CCWGG 2 cut(s) 230, 764
Bst4CI ACNGT 4 cut(s) 299, 368, 903, 919
Bst6I CTCTTC 3 cut(s) 510, 924, 1373
BstAPI GCANNNNNTGC 2 cut(s) 1196, 1313
BstBI TTCGAA 2 cut(s) 581, 807
BstC8I GCNNGC 4 cut(s) 180, 936, 993, 1420
BstDEI CTNAG 6 cut(s) 102, 208, 356, 488, 1081, 1216
BstENI CCTNNNNNAGG 2 cut(s) 733, 1179
BstF5I GGATG 5 cut(s) 767, 868, 1057, 1216, 1435
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 1340
BstKTI GATC 5 cut(s) 85, 168, 261, 1468, 1489
BstMAI GTCTC 2 cut(s) 660, 1227
BstMBI GATC 5 cut(s) 82, 165, 258, 1465, 1486
BstMWI GCNNNNNNNGC 3 cut(s) 977, 1196, 1313
BstNI CCWGG 2 cut(s) 230, 764
BstNSI RCATGY 3 cut(s) 1040, 1253, 1422
BstSCI CCNGG 2 cut(s) 228, 762
BstSFI CTRYAG 2 cut(s) 918, 1263
BstV1I GCAGC 2 cut(s) 639, 1080
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 1486
BstXI CCANNNNNNTGG 2 cut(s) 75, 1207
BstYI RGATCY 1 cut(s) 1486
BstZ17I GTATAC 2 cut(s) 915, 1478
Bsu15I ATCGAT 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 1081
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 2 cut(s) 1160, 1390
BsuTUI ATCGAT 1 cut(s) 261
BtrI CACGTC 2 cut(s) 640, 910
BtsCI GGATG 5 cut(s) 767, 868, 1057, 1216, 1435
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 3 cut(s) 866, 899, 1073
Cac8I GCNNGC 4 cut(s) 180, 936, 993, 1420
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 2 cut(s) 228, 1340
Cfr13I GGNCC 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 2 cut(s) 1245, 1411
Csp6I GTAC 3 cut(s) 400, 472, 1040
CviAII CATG 9 cut(s) 172, 859, 1037, 1250, 1276, 1341, 1419, 1426, 1472
CviQI GTAC 3 cut(s) 400, 472, 1040
DdeI CTNAG 6 cut(s) 102, 208, 356, 488, 1081, 1216
DpnI GATC 5 cut(s) 84, 167, 260, 1467, 1488
DpnII GATC 5 cut(s) 82, 165, 258, 1465, 1486
DriI GACNNNNNGTC 1 cut(s) 1219
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 3 cut(s) 510, 924, 1373
Eam1105I GACNNNNNGTC 1 cut(s) 1219
EarI CTCTTC 3 cut(s) 510, 924, 1373
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 822
Eco47I GGWCC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 1081
Eco88I CYCGRG 2 cut(s) 125, 545
EcoICRI GAGCTC 1 cut(s) 820
EcoNI CCTNNNNNAGG 2 cut(s) 733, 1179
EcoO109I RGGNCCY 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 1404
EcoRII CCWGG 2 cut(s) 228, 762
EcoT38I GRGCYC 1 cut(s) 822
FaeI CATG 9 cut(s) 175, 862, 1040, 1253, 1279, 1344, 1422, 1429, 1475
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FatI CATG 9 cut(s) 171, 858, 1036, 1249, 1275, 1340, 1418, 1425, 1471
FauI CCCGC 1 cut(s) 1098
FbaI TGATCA 2 cut(s) 82, 1465
FblI GTMKAC 2 cut(s) 914, 1477
Fnu4HI GCNGC 2 cut(s) 653, 1094
FokI GGATG 5 cut(s) 754, 875, 1064, 1223, 1442
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 2 cut(s) 653, 1094
FspBI CTAG 4 cut(s) 524, 735, 815, 992
GlaI GCGC 2 cut(s) 227, 1339
GluI GCNGC 2 cut(s) 653, 1094
GsaI CCCAGC 1 cut(s) 697
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 1160, 1390
HgaI GACGC 2 cut(s) 1245, 1411
HhaI GCGC 2 cut(s) 228, 1340
Hin1II CATG 9 cut(s) 175, 862, 1040, 1253, 1279, 1344, 1422, 1429, 1475
Hin6I GCGC 2 cut(s) 226, 1338
HinP1I GCGC 2 cut(s) 226, 1338
HinfI GANTC 7 cut(s) 135, 434, 548, 960, 1142, 1358, 1399
HphI GGTGA 2 cut(s) 92, 523
Hpy166II GTNNAC 6 cut(s) 115, 660, 685, 915, 1438, 1478
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 5 cut(s) 125, 456, 545, 776, 1010
Hpy8I GTNNAC 6 cut(s) 115, 660, 685, 915, 1438, 1478
HpyAV CCTTC 5 cut(s) 60, 201, 538, 622, 1339
HpyCH4III ACNGT 4 cut(s) 299, 368, 903, 919
HpyCH4IV ACGT 2 cut(s) 639, 909
HpyCH4V TGCA 5 cut(s) 750, 866, 938, 1190, 1316
HpyF10VI GCNNNNNNNGC 3 cut(s) 977, 1196, 1313
HpyF3I CTNAG 6 cut(s) 102, 208, 356, 488, 1081, 1216
HpySE526I ACGT 2 cut(s) 639, 909
Hsp92II CATG 9 cut(s) 175, 862, 1040, 1253, 1279, 1344, 1422, 1429, 1475
HspAI GCGC 2 cut(s) 226, 1338
Ksp22I TGATCA 2 cut(s) 82, 1465
Kzo9I GATC 5 cut(s) 82, 165, 258, 1465, 1486
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 2 cut(s) 639, 1080
LweI GCATC 3 cut(s) 29, 776, 853
MaeI CTAG 4 cut(s) 524, 735, 815, 992
MaeII ACGT 2 cut(s) 639, 909
MaeIII GTNAC 7 cut(s) 351, 673, 754, 1001, 1099, 1114, 1454
MalI GATC 5 cut(s) 84, 167, 260, 1467, 1488
MboI GATC 5 cut(s) 82, 165, 258, 1465, 1486
MboII GAAGA 9 cut(s) 515, 527, 821, 938, 941, 1310, 1313, 1360, 1460
MflI RGATCY 1 cut(s) 1486
MhlI GDGCHC 1 cut(s) 822
MlsI TGGCCA 1 cut(s) 1160
MluNI TGGCCA 1 cut(s) 1160
MlyI GAGTC 3 cut(s) 144, 557, 1393
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 1022
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 6 cut(s) 120, 147, 429, 464, 566, 1410
Msp20I TGGCCA 1 cut(s) 1160
MspA1I CMGCKG 3 cut(s) 1049, 1093, 1262
MspR9I CCNGG 2 cut(s) 230, 764
MvaI CCWGG 2 cut(s) 230, 764
MwoI GCNNNNNNNGC 3 cut(s) 977, 1196, 1313
NdeII GATC 5 cut(s) 82, 165, 258, 1465, 1486
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 9 cut(s) 175, 862, 1040, 1253, 1279, 1344, 1422, 1429, 1475
NlaIV GGNNCC 3 cut(s) 177, 1025, 1291
NspI RCATGY 3 cut(s) 1040, 1253, 1422
NspV TTCGAA 2 cut(s) 581, 807
PaeI GCATGC 1 cut(s) 1422
PaeR7I CTCGAG 2 cut(s) 125, 545
PciI ACATGT 2 cut(s) 1036, 1249
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 1022
PfeI GAWTC 4 cut(s) 434, 960, 1142, 1358
PkrI GCNGC 2 cut(s) 654, 1095
PleI GAGTC 3 cut(s) 143, 556, 1393
PpsI GAGTC 3 cut(s) 143, 556, 1393
PpuMI RGGWCCY 1 cut(s) 322
PscI ACATGT 2 cut(s) 1036, 1249
PsiI TTATAA 2 cut(s) 372, 1493
Psp124BI GAGCTC 1 cut(s) 822
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 228, 762
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 2 cut(s) 228, 762
PspN4I GGNNCC 3 cut(s) 177, 1025, 1291
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 1486
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 3 cut(s) 401, 473, 1041
RsaNI GTAC 3 cut(s) 400, 472, 1040
SacI GAGCTC 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 6 cut(s) 120, 147, 429, 464, 566, 1410
SatI GCNGC 2 cut(s) 653, 1094
Sau3AI GATC 5 cut(s) 82, 165, 258, 1465, 1486
Sau96I GGNCC 1 cut(s) 322
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 3 cut(s) 144, 557, 1393
ScrFI CCNGG 2 cut(s) 230, 764
SduI GDGCHC 1 cut(s) 822
SfaNI GCATC 3 cut(s) 29, 776, 853
SfcI CTRYAG 2 cut(s) 918, 1263
Sfr274I CTCGAG 2 cut(s) 125, 545
SfuI TTCGAA 2 cut(s) 581, 807
SinI GGWCC 1 cut(s) 322
SlaI CTCGAG 2 cut(s) 125, 545
SmlI CTYRAG 4 cut(s) 30, 125, 545, 1481
SmoI CTYRAG 4 cut(s) 30, 125, 545, 1481
SphI GCATGC 1 cut(s) 1422
SsiI CCGC 3 cut(s) 107, 1049, 1091
SspI AATATT 1 cut(s) 725
SspMI CTAG 4 cut(s) 524, 735, 815, 992
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 2 cut(s) 228, 762
TaaI ACNGT 4 cut(s) 299, 368, 903, 919
TaiI ACGT 2 cut(s) 642, 912
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 4 cut(s) 434, 960, 1142, 1358
Tru1I TTAA 6 cut(s) 120, 147, 429, 464, 566, 1410
Tru9I TTAA 6 cut(s) 120, 147, 429, 464, 566, 1410
TscAI CASTG 3 cut(s) 873, 906, 1080
TseI GCWGC 2 cut(s) 652, 1093
TspDTI ATGAA 8 cut(s) 279, 569, 690, 847, 896, 998, 1292, 1461
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 3 cut(s) 873, 906, 1080
VpaK11BI GGWCC 1 cut(s) 322
XagI CCTNNNNNAGG 2 cut(s) 733, 1179
XapI RAATTY 6 cut(s) 267, 279, 425, 612, 1283, 1404
XceI RCATGY 3 cut(s) 1040, 1253, 1422
XhoI CTCGAG 2 cut(s) 125, 545
XmiI GTMKAC 2 cut(s) 914, 1477
XmnI GAANNNNTTC 1 cut(s) 1022
XspI CTAG 4 cut(s) 524, 735, 815, 992
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.