FvH4_5g06461

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000053
Physical Location & Seq
Forward (+)
3796785 .. 3800297
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06461.t1

Sequence Viewer

Length: 1626 bp
ATGGATCCTCAGTTGGTTTCAGCATCTCAAGCTCAAACCCAAAATGGCAGTAGCACTCCAGATGTTGAACGACGTTCAGCTAATTTTTCTCCCAGCGTTTGGGGGGATTATTTTCTGAAATATGCATCTGTGGAAACTGATGATATTGAAGCCGACAAAAGTATCAAAGAACTGAAGGAAGAAGTCAAGGGGGTGCTACGACTTAGTTCTCCACAGAGACTAGACTTGATTGATTACATTCAGCGTTTGGGGGTAGCACACCATTTTGAGGATGAGATTCACCAACTTTTGCAGCAAATTCACAACCAGTACTCTTCTTCTTATGATGATGATGACCTTCACACTGTTGCCTTACGTTTTCGGTTGCTTAGGCAACAAGGATTTAAGGTTTCATGCGACATGTTCAATAAGTTCATCGATGTTGATGGGAATCTCAAGGAATCAAGCGTCGCTGACGTACCAGGACTGCTAAGTTTGTATGAAGCAGCACATCTAAGGACATATGGAGATGATATCCTAGATCGAGCAATGTCCTTCACCACCACTCATCTTGAGTCTGCAGTGGCAGCACAAGGCCGTTTAATCCCCCCACTTTCAAATCAAGAACTAAACAGTGCTCCACATTTTAGCCAAAGTCTCTTGACTTTTGCGAAGTTGGATTTCAATCAATTGCAGCGTATCCATCAGAAAGAACTAAGTGAAATCACAAGCTGGTGGAAGGAGTTAGACTTTGTAAACAAACTACCTTTTGCAAGGAACCGAATAGTAGAGGCTTACTTTTGGTCTTTGGGAGTCTGCTTTGAACCCAAGTATCGTCTTCCGAGGGAAACAATATGCAAAGCTCTTGGCTTACTTACCATGATTGATGACACTTTCGATACGTATGGCAAATTTGATGAACTAGAGCTCTTTGCTGAAGCTGTCGAGAGGTGGGATCTCTCTGCCATGGATTCACTGCCTGACTATATGAAAATTATCTATGAGGCAGTGCTGAATACCTACACTGAGATTGAAGCCGAGCTTGCCAAGGAGGGAAACTCGTATCGCATTGAATATTTAGTAGAAGGAATGCAATGTCAAGTTAGAGCTTACTTGAAGGAAGCCAAATGGTACCACCTAAAGTGCACACCGAAAACCTATGATGAATACATGAGGGTGGGACTTATTACATCCGGCATGTTTTTGGTAGAAGCAGCAGTCATTGTTCCATTAGCCGGTGAAATTTCGACAAGAGATTCCTTGGAATCGTTGTTCAGAGACCCTAACAACAAAATTGTATATGCTTCAAACATACTTGGGAGACTTCTGAATGACATCCGAAGCCACAAGCATGAGCAAAAGAGAGGAAATGATTTTTCAGCTATACAATGCTACATGAAAGAACACTGTGTTACAGAAGAAGAAGCGCTGATCGAACTGAATAAACAAGTGAATGATGCATGGAAGGATGTAAACGAAGTATTGCTCCAGCCTCCCACAACTGTGCCCAGGCCAATACTGTTGCTGTGTCTCAATCTTCTACGAGTAACTGATGTTATATACAAGAACGACGATGGTTATACTAATGGTGGAGTTGTGCTTAAGGATTATATAACTTCTCTGCTTGTCGAACGTGCTCCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

542

Amino Acids

62.04

Weight (kDa)

5.0

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 199 2.1e-53 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 240 - 483 6.3e-86 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 281 - 483 1.1e-48 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1110
AccB1I GGYRCC 1 cut(s) 1110
AccB7I CCANNNNNTGG 1 cut(s) 99
AclWI GGATC 2 cut(s) 12, 942
AcsI RAATTY 3 cut(s) 297, 890, 1221
AcuI CTGAAG 2 cut(s) 194, 936
AfaI GTAC 3 cut(s) 311, 459, 1112
AfeI AGCGCT 1 cut(s) 1407
AfiI CCNNNNNNNGG 3 cut(s) 99, 268, 1214
AflII CTTAAG 1 cut(s) 1580
AflIII ACRYGT 1 cut(s) 399
AjnI CCWGG 2 cut(s) 460, 1487
AleI CACNNNNGTG 1 cut(s) 1481
AloI GAACNNNNNNTCC 2 cut(s) 1235, 1267
AluBI AGCT 9 cut(s) 32, 80, 711, 842, 907, 920, 1021, 1088, 1361
AluI AGCT 9 cut(s) 32, 80, 711, 842, 907, 920, 1021, 1088, 1361
Alw21I GWGCWC 4 cut(s) 619, 909, 1127, 1618
Alw26I GTCTC 5 cut(s) 211, 641, 1251, 1294, 1514
Alw44I GTGCAC 1 cut(s) 1123
AlwI GGATC 2 cut(s) 12, 942
Aor51HI AGCGCT 1 cut(s) 1407
AoxI GGCC 2 cut(s) 574, 1490
ApaLI GTGCAC 1 cut(s) 1123
ApeKI GCWGC 5 cut(s) 292, 485, 566, 673, 1193
ApoI RAATTY 3 cut(s) 297, 890, 1221
Asp718I GGTACC 1 cut(s) 1110
AspLEI GCGC 1 cut(s) 1408
AsuHPI GGTGA 3 cut(s) 272, 529, 1229
BaeGI GKGCMC 2 cut(s) 1127, 1488
BaeI ACNNNNGTAYC 4 cut(s) 145, 178, 794, 827
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 1110
BanII GRGCYC 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 809
Bbv12I GWGCWC 4 cut(s) 619, 909, 1127, 1618
BbvI GCAGC 5 cut(s) 304, 497, 578, 685, 1205
BccI CCATC 3 cut(s) 419, 690, 1547
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 2 cut(s) 462, 1489
BciVI GTATCC 1 cut(s) 689
BcoDI GTCTC 5 cut(s) 211, 641, 1251, 1294, 1514
BfaI CTAG 3 cut(s) 221, 518, 902
BfmI CTRYAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 1409
BfrI CTTAAG 1 cut(s) 1580
BfuI GTATCC 1 cut(s) 689
BisI GCNGC 5 cut(s) 293, 486, 567, 674, 1194
BlsI GCNGC 5 cut(s) 294, 487, 568, 675, 1195
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 462, 1489
BmiI GGNNCC 3 cut(s) 6, 758, 1112
BmrFI CCNGG 2 cut(s) 462, 1489
BmsI GCATC 3 cut(s) 32, 134, 1426
BpiI GAAGAC 1 cut(s) 809
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 2 cut(s) 42, 1451
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 3 cut(s) 12, 419, 572
Bsa29I ATCGAT 1 cut(s) 417
BsaAI YACGTR 1 cut(s) 882
BsaBI GATNNNNATC 2 cut(s) 429, 663
BsaI GGTCTC 1 cut(s) 1251
BsaJI CCNNGG 5 cut(s) 821, 945, 1026, 1239, 1487
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 268, 1214
Bse118I RCCGGY 1 cut(s) 1214
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 2 cut(s) 534, 1079
Bse8I GATNNNNATC 2 cut(s) 429, 663
BseBI CCWGG 2 cut(s) 462, 1489
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 5 cut(s) 821, 945, 1026, 1239, 1487
BseGI GGATG 4 cut(s) 277, 1169, 1314, 1453
BseJI GATNNNNATC 2 cut(s) 429, 663
BseLI CCNNNNNNNGG 3 cut(s) 99, 268, 1214
BseMI GCAATG 2 cut(s) 534, 1079
BseMII CTCAG 2 cut(s) 23, 996
BseNI ACTGG 1 cut(s) 307
BseSI GKGCMC 2 cut(s) 1127, 1488
BseXI GCAGC 5 cut(s) 304, 497, 578, 685, 1205
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 2 cut(s) 576, 1492
BshNI GGYRCC 1 cut(s) 1110
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 4 cut(s) 619, 909, 1127, 1618
BsiSI CCGG 2 cut(s) 1173, 1215
BslFI GGGAC 1 cut(s) 1173
BslI CCNNNNNNNGG 3 cut(s) 99, 268, 1214
BsmAI GTCTC 5 cut(s) 211, 641, 1251, 1294, 1514
BsmFI GGGAC 1 cut(s) 1173
BsmI GAATGC 1 cut(s) 1074
BsnI GGCC 2 cut(s) 576, 1492
Bso31I GGTCTC 1 cut(s) 1251
Bsp1286I GDGCHC 5 cut(s) 619, 909, 1127, 1488, 1618
Bsp143I GATC 4 cut(s) 4, 520, 934, 1410
Bsp19I CCATGG 1 cut(s) 945
BspANI GGCC 2 cut(s) 576, 1492
BspCNI CTCAG 2 cut(s) 22, 997
BspDI ATCGAT 1 cut(s) 417
BspLI GGNNCC 3 cut(s) 6, 758, 1112
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 2 cut(s) 12, 942
BspT107I GGYRCC 1 cut(s) 1110
BspTI CTTAAG 1 cut(s) 1580
BspTNI GGTCTC 1 cut(s) 1251
BsrDI GCAATG 2 cut(s) 534, 1079
BsrFI RCCGGY 1 cut(s) 1214
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 1214
BssECI CCNNGG 5 cut(s) 821, 945, 1026, 1239, 1487
BssMI GATC 4 cut(s) 4, 520, 934, 1410
BssT1I CCWWGG 3 cut(s) 945, 1026, 1239
Bst2UI CCWGG 2 cut(s) 462, 1489
Bst4CI ACNGT 5 cut(s) 346, 614, 1388, 1483, 1500
Bst6I CTCTTC 1 cut(s) 319
BstAFI CTTAAG 1 cut(s) 1580
BstBAI YACGTR 1 cut(s) 882
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 7 cut(s) 9, 203, 368, 470, 494, 695, 1005
BstDSI CCRYGG 1 cut(s) 945
BstF5I GGATG 4 cut(s) 277, 1169, 1314, 1453
BstH2I RGCGCY 1 cut(s) 1409
BstHHI GCGC 1 cut(s) 1408
BstKTI GATC 4 cut(s) 7, 523, 937, 1413
BstMAI GTCTC 5 cut(s) 211, 641, 1251, 1294, 1514
BstMBI GATC 4 cut(s) 4, 520, 934, 1410
BstMWI GCNNNNNNNGC 3 cut(s) 29, 566, 1022
BstNI CCWGG 2 cut(s) 462, 1489
BstNSI RCATGY 2 cut(s) 403, 1180
BstSCI CCNGG 2 cut(s) 460, 1487
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 2 cut(s) 1127, 1488
BstSNI TACGTA 1 cut(s) 882
BstV1I GCAGC 5 cut(s) 304, 497, 578, 685, 1205
BstV2I GAAGAC 1 cut(s) 809
BstX2I RGATCY 2 cut(s) 4, 934
BstYI RGATCY 2 cut(s) 4, 934
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 576, 1492
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 945
BtsCI GGATG 4 cut(s) 277, 1169, 1314, 1453
BtsI GCAGTG 3 cut(s) 567, 953, 993
BtsIMutI CAGTG 7 cut(s) 342, 567, 619, 953, 993, 1002, 1384
Cac8I GCNNGC 1 cut(s) 1023
CfoI GCGC 1 cut(s) 1408
Cfr10I RCCGGY 1 cut(s) 1214
ClaI ATCGAT 1 cut(s) 417
CseI GACGC 1 cut(s) 436
Csp6I GTAC 3 cut(s) 310, 458, 1111
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 9 cut(s) 393, 400, 859, 946, 1150, 1177, 1331, 1375, 1440
CviQI GTAC 3 cut(s) 310, 458, 1111
DdeI CTNAG 7 cut(s) 9, 203, 368, 470, 494, 695, 1005
DpnI GATC 4 cut(s) 6, 522, 936, 1412
DpnII GATC 4 cut(s) 4, 520, 934, 1410
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 907
Eco105I TACGTA 1 cut(s) 882
Eco130I CCWWGG 3 cut(s) 945, 1026, 1239
Eco24I GRGCYC 1 cut(s) 909
Eco31I GGTCTC 1 cut(s) 1251
Eco32I GATATC 1 cut(s) 514
Eco47III AGCGCT 1 cut(s) 1407
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 2 cut(s) 194, 936
EcoICRI GAGCTC 1 cut(s) 907
EcoRII CCWGG 2 cut(s) 460, 1487
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 3 cut(s) 945, 1026, 1239
EcoT22I ATGCAT 2 cut(s) 127, 1441
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 3 cut(s) 945, 1026, 1239
FaeI CATG 9 cut(s) 396, 403, 862, 949, 1153, 1180, 1334, 1378, 1443
FalI AAGNNNNNCTT 2 cut(s) 1005, 1037
FaqI GGGAC 1 cut(s) 1173
FatI CATG 9 cut(s) 392, 399, 858, 945, 1149, 1176, 1330, 1374, 1439
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 5 cut(s) 293, 486, 567, 674, 1194
FokI GGATG 4 cut(s) 284, 1156, 1301, 1460
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 5 cut(s) 293, 486, 567, 674, 1194
FspBI CTAG 3 cut(s) 221, 518, 902
GlaI GCGC 1 cut(s) 1407
GluI GCNGC 5 cut(s) 293, 486, 567, 674, 1194
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 2 cut(s) 42, 1451
HaeII RGCGCY 1 cut(s) 1409
HaeIII GGCC 2 cut(s) 576, 1492
HapII CCGG 2 cut(s) 1173, 1215
HgaI GACGC 1 cut(s) 436
HhaI GCGC 1 cut(s) 1408
Hin1II CATG 9 cut(s) 396, 403, 862, 949, 1153, 1180, 1334, 1378, 1443
Hin6I GCGC 1 cut(s) 1406
HinP1I GCGC 1 cut(s) 1406
HinfI GANTC 8 cut(s) 277, 430, 440, 554, 792, 950, 1235, 1244
HpaII CCGG 2 cut(s) 1173, 1215
HphI GGTGA 3 cut(s) 272, 529, 1229
Hpy166II GTNNAC 3 cut(s) 736, 1125, 1453
Hpy188I TCNGA 6 cut(s) 117, 687, 822, 1256, 1308, 1319
Hpy188III TCNNGA 5 cut(s) 59, 551, 602, 640, 925
Hpy8I GTNNAC 3 cut(s) 736, 1125, 1453
Hpy99I CGWCG 3 cut(s) 75, 452, 1553
HpyAV CCTTC 7 cut(s) 169, 347, 544, 712, 1058, 1090, 1438
HpyCH4III ACNGT 5 cut(s) 346, 614, 1388, 1483, 1500
HpyCH4IV ACGT 5 cut(s) 73, 355, 456, 881, 1612
HpyCH4V TGCA 9 cut(s) 125, 292, 560, 673, 752, 837, 1072, 1125, 1439
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 566, 1022
HpyF3I CTNAG 7 cut(s) 9, 203, 368, 470, 494, 695, 1005
HpySE526I ACGT 5 cut(s) 73, 355, 456, 881, 1612
Hsp92II CATG 9 cut(s) 396, 403, 862, 949, 1153, 1180, 1334, 1378, 1443
HspAI GCGC 1 cut(s) 1406
KpnI GGTACC 1 cut(s) 1114
Kzo9I GATC 4 cut(s) 4, 520, 934, 1410
LmnI GCTCC 3 cut(s) 622, 1470, 1621
Lsp1109I GCAGC 5 cut(s) 304, 497, 578, 685, 1205
LweI GCATC 3 cut(s) 32, 134, 1426
MaeI CTAG 3 cut(s) 221, 518, 902
MaeII ACGT 5 cut(s) 73, 355, 456, 881, 1612
MaeIII GTNAC 2 cut(s) 1390, 1525
MalI GATC 4 cut(s) 6, 522, 936, 1412
MboI GATC 4 cut(s) 4, 520, 934, 1410
MboII GAAGA 7 cut(s) 191, 306, 309, 809, 1409, 1412, 1508
MfeI CAATTG 1 cut(s) 668
MflI RGATCY 2 cut(s) 4, 934
MhlI GDGCHC 5 cut(s) 619, 909, 1127, 1488, 1618
MluCI AATT 7 cut(s) 82, 297, 668, 890, 972, 1221, 1272
MlyI GAGTC 2 cut(s) 563, 801
MmeI TCCRAC 1 cut(s) 636
Mph1103I ATGCAT 2 cut(s) 127, 1441
MseI TTAA 3 cut(s) 384, 581, 1581
MslI CAYNNNNRTG 3 cut(s) 1154, 1329, 1481
MspCI CTTAAG 1 cut(s) 1580
MspI CCGG 2 cut(s) 1173, 1215
MspR9I CCNGG 2 cut(s) 462, 1489
MunI CAATTG 1 cut(s) 668
Mva1269I GAATGC 1 cut(s) 1074
MvaI CCWGG 2 cut(s) 462, 1489
MwoI GCNNNNNNNGC 3 cut(s) 29, 566, 1022
NcoI CCATGG 1 cut(s) 945
NdeI CATATG 1 cut(s) 502
NdeII GATC 4 cut(s) 4, 520, 934, 1410
NlaIII CATG 9 cut(s) 396, 403, 862, 949, 1153, 1180, 1334, 1378, 1443
NlaIV GGNNCC 3 cut(s) 6, 758, 1112
NmeAIII GCCGAG 1 cut(s) 1042
NsiI ATGCAT 2 cut(s) 127, 1441
NspI RCATGY 2 cut(s) 403, 1180
OliI CACNNNNGTG 1 cut(s) 1481
PciI ACATGT 1 cut(s) 399
PctI GAATGC 1 cut(s) 1074
PfeI GAWTC 6 cut(s) 277, 430, 440, 950, 1235, 1244
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 5 cut(s) 294, 487, 568, 675, 1195
PleI GAGTC 2 cut(s) 562, 800
PpsI GAGTC 2 cut(s) 562, 800
Ppu21I YACGTR 1 cut(s) 882
PscI ACATGT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 460, 1487
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 2 cut(s) 460, 1487
PspN4I GGNNCC 3 cut(s) 6, 758, 1112
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 2 cut(s) 4, 934
RsaI GTAC 3 cut(s) 311, 459, 1112
RsaNI GTAC 3 cut(s) 310, 458, 1111
RseI CAYNNNNRTG 3 cut(s) 1154, 1329, 1481
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 3 cut(s) 384, 581, 1581
SatI GCNGC 5 cut(s) 293, 486, 567, 674, 1194
Sau3AI GATC 4 cut(s) 4, 520, 934, 1410
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 2 cut(s) 563, 801
ScrFI CCNGG 2 cut(s) 462, 1489
SduI GDGCHC 5 cut(s) 619, 909, 1127, 1488, 1618
SfaNI GCATC 3 cut(s) 32, 134, 1426
SfcI CTRYAG 1 cut(s) 558
SmiMI CAYNNNNRTG 3 cut(s) 1154, 1329, 1481
SmlI CTYRAG 4 cut(s) 27, 434, 551, 1580
SmoI CTYRAG 4 cut(s) 27, 434, 551, 1580
SnaBI TACGTA 1 cut(s) 882
Sse9I AATT 7 cut(s) 82, 297, 668, 890, 972, 1221, 1272
SspI AATATT 1 cut(s) 1055
SspMI CTAG 3 cut(s) 221, 518, 902
SstI GAGCTC 1 cut(s) 909
StyD4I CCNGG 2 cut(s) 460, 1487
StyI CCWWGG 3 cut(s) 945, 1026, 1239
TaaI ACNGT 5 cut(s) 346, 614, 1388, 1483, 1500
TaiI ACGT 5 cut(s) 76, 358, 459, 884, 1615
TaqI TCGA 7 cut(s) 417, 523, 876, 924, 1226, 1413, 1608
TasI AATT 7 cut(s) 82, 297, 668, 890, 972, 1221, 1272
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 6 cut(s) 277, 430, 440, 950, 1235, 1244
Tru1I TTAA 3 cut(s) 384, 581, 1581
Tru9I TTAA 3 cut(s) 384, 581, 1581
TscAI CASTG 7 cut(s) 349, 567, 619, 960, 993, 1009, 1391
TseI GCWGC 5 cut(s) 292, 485, 566, 673, 1193
TspDTI ATGAA 7 cut(s) 381, 403, 495, 912, 983, 1158, 1391
TspRI CASTG 7 cut(s) 349, 567, 619, 960, 993, 1009, 1391
Van91I CCANNNNNTGG 1 cut(s) 99
Vha464I CTTAAG 1 cut(s) 1580
VneI GTGCAC 1 cut(s) 1123
XapI RAATTY 3 cut(s) 297, 890, 1221
XceI RCATGY 2 cut(s) 403, 1180
XspI CTAG 3 cut(s) 221, 518, 902
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 2 cut(s) 127, 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.