(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 13 - 109 | 1.1e-40 | Terpene synthase, N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 258 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 5 cut(s) | 41, 133, 239, 354, 442 |
| AjnI | CCWGG | 2 cut(s) | 257, 365 |
| AluBI | AGCT | 1 cut(s) | 192 |
| AluI | AGCT | 1 cut(s) | 192 |
| Alw26I | GTCTC | 1 cut(s) | 333 |
| Ama87I | CYCGRG | 1 cut(s) | 269 |
| ApeKI | GCWGC | 1 cut(s) | 278 |
| AspS9I | GGNCC | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 247 |
| AvaI | CYCGRG | 1 cut(s) | 269 |
| AvaII | GGWCC | 1 cut(s) | 261 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BbvI | GCAGC | 1 cut(s) | 290 |
| BccI | CCATC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 2 cut(s) | 259, 367 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcoDI | GTCTC | 1 cut(s) | 333 |
| BfaI | CTAG | 1 cut(s) | 359 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 279 |
| BlsI | GCNGC | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 2 cut(s) | 259, 367 |
| Bme18I | GGWCC | 1 cut(s) | 261 |
| BmeT110I | CYCGRG | 1 cut(s) | 269 |
| BmgT120I | GGNCC | 1 cut(s) | 261 |
| BmiI | GGNNCC | 1 cut(s) | 263 |
| BmrFI | CCNGG | 2 cut(s) | 259, 367 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bsa29I | ATCGAT | 1 cut(s) | 33 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 258 |
| BseBI | CCWGG | 2 cut(s) | 259, 367 |
| BseCI | ATCGAT | 1 cut(s) | 33 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BseMII | CTCAG | 1 cut(s) | 344 |
| BseXI | GCAGC | 1 cut(s) | 290 |
| BshVI | ATCGAT | 1 cut(s) | 33 |
| BsiHKCI | CYCGRG | 1 cut(s) | 269 |
| BslFI | GGGAC | 1 cut(s) | 160 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BsmAI | GTCTC | 1 cut(s) | 333 |
| BsmFI | GGGAC | 1 cut(s) | 160 |
| BsoBI | CYCGRG | 1 cut(s) | 269 |
| Bsp143I | GATC | 4 cut(s) | 9, 30, 34, 52 |
| BspCNI | CTCAG | 1 cut(s) | 343 |
| BspDI | ATCGAT | 1 cut(s) | 33 |
| BspHI | TCATGA | 1 cut(s) | 6 |
| BspLI | GGNNCC | 1 cut(s) | 263 |
| BspMAI | CTGCAG | 1 cut(s) | 280 |
| BssMI | GATC | 4 cut(s) | 9, 30, 34, 52 |
| Bst2UI | CCWGG | 2 cut(s) | 259, 367 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstDEI | CTNAG | 4 cut(s) | 86, 188, 212, 330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 256 |
| BstKTI | GATC | 4 cut(s) | 12, 33, 37, 55 |
| BstMAI | GTCTC | 1 cut(s) | 333 |
| BstMBI | GATC | 4 cut(s) | 9, 30, 34, 52 |
| BstNI | CCWGG | 2 cut(s) | 259, 367 |
| BstNSI | RCATGY | 1 cut(s) | 379 |
| BstSCI | CCNGG | 2 cut(s) | 257, 365 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 1 cut(s) | 290 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| Bsu15I | ATCGAT | 1 cut(s) | 33 |
| BsuTUI | ATCGAT | 1 cut(s) | 33 |
| BtgZI | GCGATG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 1 cut(s) | 245 |
| CciI | TCATGA | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 261 |
| ClaI | ATCGAT | 1 cut(s) | 33 |
| CviAII | CATG | 4 cut(s) | 7, 111, 320, 376 |
| CviJI | RGCY | 6 cut(s) | 99, 192, 203, 334, 358, 365 |
| CviKI_1 | RGCY | 6 cut(s) | 99, 192, 203, 334, 358, 365 |
| DdeI | CTNAG | 4 cut(s) | 86, 188, 212, 330 |
| DpnI | GATC | 4 cut(s) | 11, 32, 36, 54 |
| DpnII | GATC | 4 cut(s) | 9, 30, 34, 52 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| Eco47I | GGWCC | 1 cut(s) | 261 |
| Eco88I | CYCGRG | 1 cut(s) | 269 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 256 |
| EcoO109I | RGGNCCY | 1 cut(s) | 261 |
| EcoRII | CCWGG | 2 cut(s) | 257, 365 |
| FaeI | CATG | 4 cut(s) | 10, 114, 323, 379 |
| FaiI | YATR | 9 cut(s) | 8, 20, 102, 112, 198, 233, 321, 377, 396 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 219, 251 |
| FaqI | GGGAC | 1 cut(s) | 160 |
| FatI | CATG | 4 cut(s) | 6, 110, 319, 375 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| Fnu4HI | GCNGC | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 1 cut(s) | 279 |
| FspBI | CTAG | 1 cut(s) | 359 |
| GluI | GCNGC | 1 cut(s) | 279 |
| Hin1II | CATG | 4 cut(s) | 10, 114, 323, 379 |
| HindIII | AAGCTT | 1 cut(s) | 190 |
| HinfI | GANTC | 2 cut(s) | 272, 398 |
| HphI | GGTGA | 2 cut(s) | 62, 247 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy188III | TCNNGA | 3 cut(s) | 7, 38, 269 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyAV | CCTTC | 2 cut(s) | 262, 337 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 3 cut(s) | 278, 428, 451 |
| HpyF3I | CTNAG | 4 cut(s) | 86, 188, 212, 330 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 4 cut(s) | 10, 114, 323, 379 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| Kzo9I | GATC | 4 cut(s) | 9, 30, 34, 52 |
| LpnPI | CCDG | 4 cut(s) | 244, 271, 352, 379 |
| Lsp1109I | GCAGC | 1 cut(s) | 290 |
| MaeI | CTAG | 1 cut(s) | 359 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 2 cut(s) | 140, 313 |
| MalI | GATC | 4 cut(s) | 11, 32, 36, 54 |
| MboI | GATC | 4 cut(s) | 9, 30, 34, 52 |
| MboII | GAAGA | 2 cut(s) | 239, 251 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MnlI | CCTC | 2 cut(s) | 235, 382 |
| MseI | TTAA | 2 cut(s) | 153, 446 |
| MslI | CAYNNNNRTG | 1 cut(s) | 17 |
| MspR9I | CCNGG | 2 cut(s) | 259, 367 |
| MvaI | CCWGG | 2 cut(s) | 259, 367 |
| NdeII | GATC | 4 cut(s) | 9, 30, 34, 52 |
| NlaIII | CATG | 4 cut(s) | 10, 114, 323, 379 |
| NlaIV | GGNNCC | 1 cut(s) | 263 |
| NspI | RCATGY | 1 cut(s) | 379 |
| PaeR7I | CTCGAG | 1 cut(s) | 269 |
| PagI | TCATGA | 1 cut(s) | 6 |
| PciI | ACATGT | 1 cut(s) | 375 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PkrI | GCNGC | 1 cut(s) | 280 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| PpuMI | RGGWCCY | 1 cut(s) | 261 |
| PscI | ACATGT | 1 cut(s) | 375 |
| Psp5II | RGGWCCY | 1 cut(s) | 261 |
| Psp6I | CCWGG | 2 cut(s) | 257, 365 |
| PspGI | CCWGG | 2 cut(s) | 257, 365 |
| PspN4I | GGNNCC | 1 cut(s) | 263 |
| PspPI | GGNCC | 1 cut(s) | 261 |
| PspPPI | RGGWCCY | 1 cut(s) | 261 |
| PstI | CTGCAG | 1 cut(s) | 280 |
| RseI | CAYNNNNRTG | 1 cut(s) | 17 |
| SaqAI | TTAA | 2 cut(s) | 153, 446 |
| SatI | GCNGC | 1 cut(s) | 279 |
| Sau3AI | GATC | 4 cut(s) | 9, 30, 34, 52 |
| Sau96I | GGNCC | 1 cut(s) | 261 |
| SchI | GAGTC | 1 cut(s) | 281 |
| ScrFI | CCNGG | 2 cut(s) | 259, 367 |
| SetI | ASST | 3 cut(s) | 27, 194, 254 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| Sfr274I | CTCGAG | 1 cut(s) | 269 |
| SinI | GGWCC | 1 cut(s) | 261 |
| SlaI | CTCGAG | 1 cut(s) | 269 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 17 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| SspMI | CTAG | 1 cut(s) | 359 |
| StyD4I | CCNGG | 2 cut(s) | 257, 365 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TaqI | TCGA | 4 cut(s) | 33, 79, 123, 270 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 2 cut(s) | 153, 446 |
| Tru9I | TTAA | 2 cut(s) | 153, 446 |
| TscAI | CASTG | 1 cut(s) | 252 |
| TseI | GCWGC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 2 cut(s) | 99, 213 |
| TspGWI | ACGGA | 2 cut(s) | 62, 237 |
| TspRI | CASTG | 1 cut(s) | 252 |
| VpaK11BI | GGWCC | 1 cut(s) | 261 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 256 |
| XceI | RCATGY | 1 cut(s) | 379 |
| XhoI | CTCGAG | 1 cut(s) | 269 |
| XspI | CTAG | 1 cut(s) | 359 |