(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 106 - 278 | 5.5e-60 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 335 - 575 | 8.1e-92 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 376 - 575 | 1e-57 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1269 |
| AccB1I | GGYRCC | 1 cut(s) | 1664 |
| AccI | GTMKAC | 1 cut(s) | 1812 |
| AccII | CGCG | 1 cut(s) | 202 |
| AciI | CCGC | 2 cut(s) | 200, 1134 |
| AclWI | GGATC | 4 cut(s) | 413, 426, 1232, 1245 |
| AcoI | YGGCCR | 1 cut(s) | 1533 |
| AcsI | RAATTY | 5 cut(s) | 50, 510, 522, 656, 1779 |
| AcuI | CTGAAG | 3 cut(s) | 300, 656, 1224 |
| AfaI | GTAC | 1 cut(s) | 1820 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 206, 244, 720, 973, 1110, 1527, 1582 |
| AflIII | ACRYGT | 3 cut(s) | 169, 228, 376 |
| AhlI | ACTAGT | 1 cut(s) | 754 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 143, 175 |
| Alw21I | GWGCWC | 2 cut(s) | 1197, 1857 |
| Alw26I | GTCTC | 3 cut(s) | 237, 283, 1035 |
| AlwI | GGATC | 4 cut(s) | 413, 426, 1232, 1245 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 278 |
| AoxI | GGCC | 2 cut(s) | 263, 1533 |
| ApoI | RAATTY | 5 cut(s) | 50, 510, 522, 656, 1779 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1589, 1621 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1209 |
| AspA2I | CCTAGG | 1 cut(s) | 472 |
| AspS9I | GGNCC | 1 cut(s) | 1597 |
| AsuHPI | GGTGA | 5 cut(s) | 335, 412, 518, 754, 1511 |
| AsuII | TTCGAA | 1 cut(s) | 847 |
| AvaII | GGWCC | 1 cut(s) | 1597 |
| AvrII | CCTAGG | 1 cut(s) | 472 |
| BalI | TGGCCA | 1 cut(s) | 1535 |
| BamHI | GGATCC | 2 cut(s) | 418, 1237 |
| BanI | GGYRCC | 1 cut(s) | 1664 |
| BanII | GRGCYC | 1 cut(s) | 1197 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 28 |
| BbsI | GAAGAC | 3 cut(s) | 741, 751, 1372 |
| Bbv12I | GWGCWC | 2 cut(s) | 1197, 1857 |
| BccI | CCATC | 3 cut(s) | 723, 975, 1820 |
| BceAI | ACGGC | 1 cut(s) | 1015 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BciVI | GTATCC | 1 cut(s) | 717 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcoDI | GTCTC | 3 cut(s) | 237, 283, 1035 |
| BcuI | ACTAGT | 1 cut(s) | 754 |
| BfaI | CTAG | 8 cut(s) | 368, 473, 546, 755, 873, 1190, 1347, 1472 |
| BfuI | GTATCC | 1 cut(s) | 717 |
| BlnI | CCTAGG | 1 cut(s) | 472 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| Bme18I | GGWCC | 1 cut(s) | 1597 |
| BmgT120I | GGNCC | 1 cut(s) | 1597 |
| BmiI | GGNNCC | 3 cut(s) | 420, 1239, 1666 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 6 cut(s) | 257, 399, 674, 859, 864, 1741 |
| BpiI | GAAGAC | 3 cut(s) | 741, 751, 1372 |
| Bpu14I | TTCGAA | 1 cut(s) | 847 |
| BpuEI | CTTGAG | 3 cut(s) | 68, 237, 797 |
| Bsa29I | ATCGAT | 1 cut(s) | 1152 |
| BsaBI | GATNNNNATC | 1 cut(s) | 948 |
| BsaI | GGTCTC | 1 cut(s) | 283 |
| BsaJI | CCNNGG | 6 cut(s) | 348, 472, 1171, 1233, 1545, 1632 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 206, 244, 720, 973, 1110, 1527, 1582 |
| Bse118I | RCCGGY | 1 cut(s) | 1575 |
| Bse3DI | GCAATG | 1 cut(s) | 143 |
| Bse8I | GATNNNNATC | 1 cut(s) | 948 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseCI | ATCGAT | 1 cut(s) | 1152 |
| BseDI | CCNNGG | 6 cut(s) | 348, 472, 1171, 1233, 1545, 1632 |
| BseGI | GGATG | 4 cut(s) | 414, 874, 1228, 1591 |
| BseJI | GATNNNNATC | 1 cut(s) | 948 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 206, 244, 720, 973, 1110, 1527, 1582 |
| BseMI | GCAATG | 1 cut(s) | 143 |
| BseMII | CTCAG | 2 cut(s) | 102, 272 |
| BseRI | GAGGAG | 2 cut(s) | 71, 1733 |
| Bsh1236I | CGCG | 1 cut(s) | 202 |
| BshFI | GGCC | 2 cut(s) | 265, 1535 |
| BshNI | GGYRCC | 1 cut(s) | 1664 |
| BshVI | ATCGAT | 1 cut(s) | 1152 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1197, 1857 |
| BsiSI | CCGG | 1 cut(s) | 1576 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 206, 244, 720, 973, 1110, 1527, 1582 |
| BsmAI | GTCTC | 3 cut(s) | 237, 283, 1035 |
| BsnI | GGCC | 2 cut(s) | 265, 1535 |
| Bso31I | GGTCTC | 1 cut(s) | 283 |
| Bsp119I | TTCGAA | 1 cut(s) | 847 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1197, 1857 |
| Bsp143I | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| Bsp19I | CCATGG | 2 cut(s) | 1171, 1233 |
| BspACI | CCGC | 2 cut(s) | 200, 1134 |
| BspANI | GGCC | 2 cut(s) | 265, 1535 |
| BspCNI | CTCAG | 2 cut(s) | 103, 271 |
| BspDI | ATCGAT | 1 cut(s) | 1152 |
| BspFNI | CGCG | 1 cut(s) | 202 |
| BspLI | GGNNCC | 3 cut(s) | 420, 1239, 1666 |
| BspPI | GGATC | 4 cut(s) | 413, 426, 1232, 1245 |
| BspQI | GCTCTTC | 1 cut(s) | 1299 |
| BspT104I | TTCGAA | 1 cut(s) | 847 |
| BspT107I | GGYRCC | 1 cut(s) | 1664 |
| BspTNI | GGTCTC | 1 cut(s) | 283 |
| BsrDI | GCAATG | 1 cut(s) | 143 |
| BsrFI | RCCGGY | 1 cut(s) | 1575 |
| BssAI | RCCGGY | 1 cut(s) | 1575 |
| BssECI | CCNNGG | 6 cut(s) | 348, 472, 1171, 1233, 1545, 1632 |
| BssMI | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| BssNAI | GTATAC | 1 cut(s) | 1813 |
| BssT1I | CCWWGG | 4 cut(s) | 472, 1171, 1233, 1545 |
| Bst1107I | GTATAC | 1 cut(s) | 1813 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 5 cut(s) | 274, 794, 1278, 1423, 1852 |
| Bst6I | CTCTTC | 5 cut(s) | 390, 398, 675, 741, 1299 |
| BstBI | TTCGAA | 1 cut(s) | 847 |
| BstC8I | GCNNGC | 2 cut(s) | 1368, 1577 |
| BstDEI | CTNAG | 6 cut(s) | 111, 138, 258, 451, 590, 719 |
| BstDSI | CCRYGG | 3 cut(s) | 348, 1171, 1233 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1108 |
| BstF5I | GGATG | 4 cut(s) | 414, 874, 1228, 1591 |
| BstFNI | CGCG | 1 cut(s) | 202 |
| BstKTI | GATC | 7 cut(s) | 90, 110, 328, 421, 786, 1240, 1644 |
| BstMAI | GTCTC | 3 cut(s) | 237, 283, 1035 |
| BstMBI | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 43, 254, 1352, 1679 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstNSI | RCATGY | 4 cut(s) | 173, 232, 380, 1797 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BstUI | CGCG | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 3 cut(s) | 741, 751, 1372 |
| BstX2I | RGATCY | 2 cut(s) | 418, 1237 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 318 |
| BstYI | RGATCY | 2 cut(s) | 418, 1237 |
| BstZ17I | GTATAC | 1 cut(s) | 1813 |
| Bsu15I | ATCGAT | 1 cut(s) | 1152 |
| BsuI | GTATCC | 1 cut(s) | 717 |
| BsuRI | GGCC | 2 cut(s) | 265, 1535 |
| BsuTUI | ATCGAT | 1 cut(s) | 1152 |
| BtgI | CCRYGG | 3 cut(s) | 348, 1171, 1233 |
| BtsCI | GGATG | 4 cut(s) | 414, 874, 1228, 1591 |
| BtsI | GCAGTG | 1 cut(s) | 1766 |
| BtsIMutI | CAGTG | 4 cut(s) | 1274, 1428, 1448, 1766 |
| Cac8I | GCNNGC | 2 cut(s) | 1368, 1577 |
| CaiI | CAGNNNCTG | 1 cut(s) | 278 |
| Cfr10I | RCCGGY | 1 cut(s) | 1575 |
| Cfr13I | GGNCC | 1 cut(s) | 1597 |
| ClaI | ATCGAT | 1 cut(s) | 1152 |
| CseI | GACGC | 1 cut(s) | 1721 |
| CsiI | ACCWGGT | 1 cut(s) | 99 |
| Csp6I | GTAC | 1 cut(s) | 1819 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 337, 372 |
| CviQI | GTAC | 1 cut(s) | 1819 |
| DdeI | CTNAG | 6 cut(s) | 111, 138, 258, 451, 590, 719 |
| DpnI | GATC | 7 cut(s) | 89, 109, 327, 420, 785, 1239, 1643 |
| DpnII | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| EaeI | YGGCCR | 1 cut(s) | 1533 |
| Eam1104I | CTCTTC | 5 cut(s) | 390, 398, 675, 741, 1299 |
| EarI | CTCTTC | 5 cut(s) | 390, 398, 675, 741, 1299 |
| Ecl136II | GAGCTC | 1 cut(s) | 1195 |
| Eco130I | CCWWGG | 4 cut(s) | 472, 1171, 1233, 1545 |
| Eco24I | GRGCYC | 1 cut(s) | 1197 |
| Eco31I | GGTCTC | 1 cut(s) | 283 |
| Eco47I | GGWCC | 1 cut(s) | 1597 |
| Eco53kI | GAGCTC | 1 cut(s) | 1195 |
| Eco57I | CTGAAG | 3 cut(s) | 300, 656, 1224 |
| EcoICRI | GAGCTC | 1 cut(s) | 1195 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1108 |
| EcoRI | GAATTC | 1 cut(s) | 1779 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| EcoT14I | CCWWGG | 4 cut(s) | 472, 1171, 1233, 1545 |
| EcoT38I | GRGCYC | 1 cut(s) | 1197 |
| ErhI | CCWWGG | 4 cut(s) | 472, 1171, 1233, 1545 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 543, 575, 1293, 1325 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| FblI | GTMKAC | 1 cut(s) | 1812 |
| FokI | GGATG | 4 cut(s) | 421, 881, 1235, 1598 |
| FriOI | GRGCYC | 1 cut(s) | 1197 |
| FspBI | CTAG | 8 cut(s) | 368, 473, 546, 755, 873, 1190, 1347, 1472 |
| HaeIII | GGCC | 2 cut(s) | 265, 1535 |
| HapII | CCGG | 1 cut(s) | 1576 |
| HgaI | GACGC | 1 cut(s) | 1721 |
| HincII | GTYRAC | 1 cut(s) | 358 |
| HindII | GTYRAC | 1 cut(s) | 358 |
| HindIII | AAGCTT | 1 cut(s) | 697 |
| HinfI | GANTC | 6 cut(s) | 779, 919, 1166, 1335, 1517, 1733 |
| HpaII | CCGG | 1 cut(s) | 1576 |
| HphI | GGTGA | 5 cut(s) | 335, 412, 518, 754, 1511 |
| Hpy166II | GTNNAC | 7 cut(s) | 97, 135, 358, 1035, 1060, 1597, 1813 |
| Hpy188I | TCNGA | 7 cut(s) | 112, 261, 280, 383, 675, 1215, 1785 |
| Hpy188III | TCNNGA | 5 cut(s) | 85, 163, 687, 776, 896 |
| Hpy8I | GTNNAC | 7 cut(s) | 97, 135, 358, 1035, 1060, 1597, 1813 |
| HpyAV | CCTTC | 9 cut(s) | 303, 444, 500, 635, 813, 997, 1313, 1531, 1714 |
| HpyCH4III | ACNGT | 5 cut(s) | 274, 794, 1278, 1423, 1852 |
| HpyCH4IV | ACGT | 3 cut(s) | 158, 1025, 1806 |
| HpyCH4V | TGCA | 8 cut(s) | 618, 935, 958, 1125, 1402, 1565, 1673, 1793 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 43, 254, 1352, 1679 |
| HpyF3I | CTNAG | 6 cut(s) | 111, 138, 258, 451, 590, 719 |
| HpySE526I | ACGT | 3 cut(s) | 158, 1025, 1806 |
| KroI | GCCGGC | 1 cut(s) | 1575 |
| KroNI | GCCGGC | 1 cut(s) | 1577 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| Kzo9I | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| LguI | GCTCTTC | 1 cut(s) | 1299 |
| LmnI | GCTCC | 1 cut(s) | 84 |
| LweI | GCATC | 6 cut(s) | 257, 399, 674, 859, 864, 1741 |
| MabI | ACCWGGT | 1 cut(s) | 99 |
| MaeI | CTAG | 8 cut(s) | 368, 473, 546, 755, 873, 1190, 1347, 1472 |
| MaeII | ACGT | 3 cut(s) | 158, 1025, 1806 |
| MaeIII | GTNAC | 7 cut(s) | 224, 602, 1077, 1129, 1474, 1709, 1829 |
| MalI | GATC | 7 cut(s) | 89, 109, 327, 420, 785, 1239, 1643 |
| MboI | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| MfeI | CAATTG | 1 cut(s) | 443 |
| MflI | RGATCY | 2 cut(s) | 418, 1237 |
| MhlI | GDGCHC | 2 cut(s) | 1197, 1857 |
| MlsI | TGGCCA | 1 cut(s) | 1535 |
| MluNI | TGGCCA | 1 cut(s) | 1535 |
| MlyI | GAGTC | 2 cut(s) | 788, 1511 |
| MmeI | TCCRAC | 1 cut(s) | 921 |
| Mox20I | TGGCCA | 1 cut(s) | 1535 |
| MroNI | GCCGGC | 1 cut(s) | 1575 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1209 |
| MscI | TGGCCA | 1 cut(s) | 1535 |
| MseI | TTAA | 7 cut(s) | 177, 285, 425, 660, 695, 797, 833 |
| Msp20I | TGGCCA | 1 cut(s) | 1535 |
| MspI | CCGG | 1 cut(s) | 1576 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MunI | CAATTG | 1 cut(s) | 443 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| MvnI | CGCG | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 43, 254, 1352, 1679 |
| NaeI | GCCGGC | 1 cut(s) | 1577 |
| NcoI | CCATGG | 2 cut(s) | 1171, 1233 |
| NdeII | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| NgoMIV | GCCGGC | 1 cut(s) | 1575 |
| NlaIV | GGNNCC | 3 cut(s) | 420, 1239, 1666 |
| NmeAIII | GCCGAG | 1 cut(s) | 1613 |
| NmuCI | GTSAC | 3 cut(s) | 1077, 1129, 1709 |
| NspI | RCATGY | 4 cut(s) | 173, 232, 380, 1797 |
| NspV | TTCGAA | 1 cut(s) | 847 |
| PciI | ACATGT | 3 cut(s) | 169, 228, 376 |
| PciSI | GCTCTTC | 1 cut(s) | 1299 |
| PdiI | GCCGGC | 1 cut(s) | 1577 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1209 |
| PfeI | GAWTC | 4 cut(s) | 919, 1166, 1335, 1733 |
| PleI | GAGTC | 2 cut(s) | 787, 1511 |
| PpsI | GAGTC | 2 cut(s) | 787, 1511 |
| PscI | ACATGT | 3 cut(s) | 169, 228, 376 |
| PsiI | TTATAA | 1 cut(s) | 1269 |
| Psp124BI | GAGCTC | 1 cut(s) | 1197 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 3 cut(s) | 420, 1239, 1666 |
| PspPI | GGNCC | 1 cut(s) | 1597 |
| PstNI | CAGNNNCTG | 1 cut(s) | 278 |
| PsuI | RGATCY | 2 cut(s) | 418, 1237 |
| RsaI | GTAC | 1 cut(s) | 1820 |
| RsaNI | GTAC | 1 cut(s) | 1819 |
| SacI | GAGCTC | 1 cut(s) | 1197 |
| SapI | GCTCTTC | 1 cut(s) | 1299 |
| SaqAI | TTAA | 7 cut(s) | 177, 285, 425, 660, 695, 797, 833 |
| Sau3AI | GATC | 7 cut(s) | 87, 107, 325, 418, 783, 1237, 1641 |
| Sau96I | GGNCC | 1 cut(s) | 1597 |
| SchI | GAGTC | 2 cut(s) | 788, 1511 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SduI | GDGCHC | 2 cut(s) | 1197, 1857 |
| SexAI | ACCWGGT | 1 cut(s) | 99 |
| SfaNI | GCATC | 6 cut(s) | 257, 399, 674, 859, 864, 1741 |
| SfuI | TTCGAA | 1 cut(s) | 847 |
| SinI | GGWCC | 1 cut(s) | 1597 |
| SmlI | CTYRAG | 3 cut(s) | 83, 252, 776 |
| SmoI | CTYRAG | 3 cut(s) | 83, 252, 776 |
| SpeI | ACTAGT | 1 cut(s) | 754 |
| SsiI | CCGC | 2 cut(s) | 200, 1134 |
| SspI | AATATT | 1 cut(s) | 1100 |
| SspMI | CTAG | 8 cut(s) | 368, 473, 546, 755, 873, 1190, 1347, 1472 |
| SstI | GAGCTC | 1 cut(s) | 1197 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| StyI | CCWWGG | 4 cut(s) | 472, 1171, 1233, 1545 |
| TaaI | ACNGT | 5 cut(s) | 274, 794, 1278, 1423, 1852 |
| TaiI | ACGT | 3 cut(s) | 161, 1028, 1809 |
| TfiI | GAWTC | 4 cut(s) | 919, 1166, 1335, 1733 |
| Tru1I | TTAA | 7 cut(s) | 177, 285, 425, 660, 695, 797, 833 |
| Tru9I | TTAA | 7 cut(s) | 177, 285, 425, 660, 695, 797, 833 |
| TscAI | CASTG | 4 cut(s) | 1281, 1428, 1455, 1773 |
| TseFI | GTSAC | 3 cut(s) | 1077, 1129, 1709 |
| Tsp45I | GTSAC | 3 cut(s) | 1077, 1129, 1709 |
| TspDTI | ATGAA | 8 cut(s) | 17, 285, 603, 720, 1054, 1271, 1373, 1667 |
| TspGWI | ACGGA | 3 cut(s) | 365, 566, 1836 |
| TspRI | CASTG | 4 cut(s) | 1281, 1428, 1455, 1773 |
| VpaK11BI | GGWCC | 1 cut(s) | 1597 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1108 |
| XapI | RAATTY | 5 cut(s) | 50, 510, 522, 656, 1779 |
| XceI | RCATGY | 4 cut(s) | 173, 232, 380, 1797 |
| XmaJI | CCTAGG | 1 cut(s) | 472 |
| XmiI | GTMKAC | 1 cut(s) | 1812 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1209 |
| XspI | CTAG | 8 cut(s) | 368, 473, 546, 755, 873, 1190, 1347, 1472 |