Rroxscaffold_4G00323850

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000053
Physical Location & Seq
Forward (+)
55022159 .. 55024792
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323850.1

Sequence Viewer

Length: 1407 bp
ATGTCTGTCCCTGCTTTAGCGTCTGAGCCAGCTCAAACCCCGAATATTACTGCCACTCCTGATGTTACACGACGTTCAGCTAATTATTCTCCAAGCATTTGGGGTGATCATTTTCTGTCATATGCTTCCATGGAAGCGGCAGATAGTAAAAGTAAGAAACATATCCAAGACTTGAAGGAAGAGCTGAAGAGGATGATAATGGCTCCAGCGAAAAGGCCTTCACAAAAATTGCACTTCATCGACCACATTCAGCGCTTAGGTGTCTCATACCATTTCGAAGATGAGATTGACCAAATTTTGCAGCAAGTTCACGCAGAAGAAGAATATGATGATCTTTGCACCACTGCTCTAAGCTTTCGATTGCTTAGACAACAAGGTTATAACACTTCATGCAATATGTTTAACAAGTTCAAGGATGATGATGGAAGATTTAAAGAATCGCTTATTGATGATGTACTCGGCCTGTTAAGTTTGTATGAAGCCTCACATCTTCAGATGCCCGGGGAAGATATACTGAATGACGCACTAACCTTCACTACCGCTCATCTCGAGTCTGCAGCACACCGCTTAAGTTCATCGTCTCTGCTTTGGAAACAAGTAACTCATGCCTTGTATCAACCACTTTGGCAGGGCATGCCCAGGATTGAAGCCAGGCATTACTTGTCTATTTACCAAGAAGATGATTCACATAATGAAACTCTCCTGAATTTTGCAAAGCTTGATTTCAACACTGTGCAGAAAGTTCATCAGAAAGAACTAAGCGAAATTACGAGGTGGTGGAAGGACTTGGACTTTGTAACCAAGCTACCTTTTGCAAGAGACAAGTTTAAAGCTCAAGTCAGAGCTTACTTCCAGGAAGCGAAATGGTTGAAACAAAAGTACACACCAACAATGGAAGAGTATATGTCTGTGGAACGCAATACATCCTTCTTCATGTTGGCAGTAGTGTCATTTGTTGGAATGGGAGTTATTGTTACAAAAGACTCCATGGATTGGGTTTTCAATGAACCTAAGATTTCAAAGGCCGCATCTATAATTGGCAGACTCATGAATGACCTTGTAGGCCATAAGTTTGAGCAAAAGAGAGAACACATTGCATCAGCAGTGGAATGCTACATGAAGCAATATGGTGTCACAGATGAAGAAGCAGAAGTCGAGCTAACTAAACAACTGAATGACGCATGGCAAGACATAAACGAAGAGTGGCTCAATGCCACCTCTATCCCTAGGCCCCTACTCTTGCTGATTTTGAACTTGGCACGTTCTAGTGAAGTTCTATACAAGGGTGAAGATGTGTTTACTCATTCTGAAAATGTGCTCAAGGGTCATGATACTAAATACGCTCCTAAGAGAGAGAGAGCTCCTCATCCCTTAGAGGGCTTCCTCTTCTTATTGGACTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

468

Amino Acids

54.04

Weight (kDa)

5.66

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 204 1.3e-57 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 270 - 397 1.9e-41 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 270 - 397 5.8e-36 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 993
AccBSI CCGCTC 1 cut(s) 542
AciI CCGC 4 cut(s) 137, 540, 565, 1026
AcsI RAATTY 2 cut(s) 294, 706
AcuI CTGAAG 2 cut(s) 206, 476
AfaI GTAC 2 cut(s) 456, 881
AfeI AGCGCT 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 993, 1376
AflII CTTAAG 1 cut(s) 568
AgsI TTSAA 8 cut(s) 175, 412, 647, 727, 871, 1003, 1020, 1252
AjnI CCWGG 3 cut(s) 638, 650, 852
Alw21I GWGCWC 2 cut(s) 1320, 1363
Alw26I GTCTC 3 cut(s) 268, 585, 813
Ama87I CYCGRG 2 cut(s) 500, 548
Aor51HI AGCGCT 1 cut(s) 254
AoxI GGCC 5 cut(s) 215, 460, 1023, 1063, 1229
ApeKI GCWGC 2 cut(s) 301, 557
ApoI RAATTY 2 cut(s) 294, 706
ArsI GACNNNNNNTTYG 2 cut(s) 776, 808
AspA2I CCTAGG 1 cut(s) 1226
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 1230
AsuC2I CCSGG 2 cut(s) 501, 502
AsuHPI GGTGA 2 cut(s) 116, 1298
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 2 cut(s) 500, 548
AvrII CCTAGG 1 cut(s) 1226
BanII GRGCYC 1 cut(s) 1363
Bbv12I GWGCWC 2 cut(s) 1320, 1363
BbvI GCAGC 2 cut(s) 313, 569
BccI CCATC 1 cut(s) 416
BciT130I CCWGG 3 cut(s) 640, 652, 854
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 501, 502
BcoDI GTCTC 3 cut(s) 268, 585, 813
BfaI CTAG 2 cut(s) 1227, 1266
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 568
BisI GCNGC 4 cut(s) 138, 302, 558, 1026
BlnI CCTAGG 1 cut(s) 1226
BlsI GCNGC 4 cut(s) 139, 303, 559, 1027
Bme1390I CCNGG 5 cut(s) 501, 502, 640, 652, 854
BmeT110I CYCGRG 2 cut(s) 500, 548
BmgT120I GGNCC 1 cut(s) 1230
BmiI GGNNCC 2 cut(s) 204, 1232
BmrFI CCNGG 5 cut(s) 501, 502, 640, 652, 854
BmsI GCATC 3 cut(s) 486, 1037, 1106
BplI GAGNNNNNCTC 2 cut(s) 1348, 1380
BpmI CTGGAG 2 cut(s) 189, 1384
Bpu10I CCTNAGC 1 cut(s) 256
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 819, 1304
BpuMI CCSGG 2 cut(s) 501, 502
BsaJI CCNNGG 6 cut(s) 129, 500, 501, 638, 987, 1226
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 957, 987
Bsc4I CCNNNNNNNGG 2 cut(s) 993, 1376
Bse1I ACTGG 1 cut(s) 1401
Bse3DI GCAATG 1 cut(s) 1092
BseBI CCWGG 3 cut(s) 640, 652, 854
BseDI CCNNGG 6 cut(s) 129, 500, 501, 638, 987, 1226
BseGI GGATG 4 cut(s) 198, 421, 923, 1366
BseLI CCNNNNNNNGG 2 cut(s) 993, 1376
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 1401
BseRI GAGGAG 1 cut(s) 1353
BseXI GCAGC 2 cut(s) 313, 569
BsgI GTGCAG 1 cut(s) 755
BshFI GGCC 5 cut(s) 217, 462, 1025, 1065, 1231
BsiHKAI GWGCWC 2 cut(s) 1320, 1363
BsiHKCI CYCGRG 2 cut(s) 500, 548
BsiSI CCGG 1 cut(s) 501
BslI CCNNNNNNNGG 2 cut(s) 993, 1376
BsmAI GTCTC 3 cut(s) 268, 585, 813
BsmBI CGTCTC 1 cut(s) 585
BsmI GAATGC 1 cut(s) 1115
BsnI GGCC 5 cut(s) 217, 462, 1025, 1065, 1231
BsoBI CYCGRG 2 cut(s) 500, 548
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 1320, 1363
Bsp143I GATC 2 cut(s) 106, 331
Bsp19I CCATGG 2 cut(s) 129, 987
BspACI CCGC 4 cut(s) 137, 540, 565, 1026
BspANI GGCC 5 cut(s) 217, 462, 1025, 1065, 1231
BspCNI CTCAG 1 cut(s) 16
BspHI TCATGA 2 cut(s) 1047, 1327
BspLI GGNNCC 2 cut(s) 204, 1232
BspMAI CTGCAG 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 276
BspTI CTTAAG 1 cut(s) 568
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 1 cut(s) 1401
BssECI CCNNGG 6 cut(s) 129, 500, 501, 638, 987, 1226
BssMI GATC 2 cut(s) 106, 331
BssT1I CCWWGG 3 cut(s) 129, 987, 1226
Bst2UI CCWGG 3 cut(s) 640, 652, 854
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 5 cut(s) 174, 182, 891, 1194, 1391
BstAFI CTTAAG 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 634
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 30, 635
BstDEI CTNAG 8 cut(s) 24, 256, 350, 365, 758, 1011, 1347, 1372
BstDSI CCRYGG 2 cut(s) 129, 987
BstF5I GGATG 4 cut(s) 198, 421, 923, 1366
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 2 cut(s) 109, 334
BstMAI GTCTC 3 cut(s) 268, 585, 813
BstMBI GATC 2 cut(s) 106, 331
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstNI CCWGG 3 cut(s) 640, 652, 854
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 5 cut(s) 499, 500, 638, 650, 852
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 313, 569
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuRI GGCC 5 cut(s) 217, 462, 1025, 1065, 1231
BtgI CCRYGG 2 cut(s) 129, 987
BtsCI GGATG 4 cut(s) 198, 421, 923, 1366
BtsI GCAGTG 2 cut(s) 342, 1110
BtsIMutI CAGTG 3 cut(s) 342, 729, 1110
Cac8I GCNNGC 2 cut(s) 30, 635
CciI TCATGA 2 cut(s) 1047, 1327
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 1230
Cfr9I CCCGGG 1 cut(s) 500
CseI GACGC 3 cut(s) 9, 530, 1187
Csp6I GTAC 2 cut(s) 455, 880
CviQI GTAC 2 cut(s) 455, 880
DdeI CTNAG 8 cut(s) 24, 256, 350, 365, 758, 1011, 1347, 1372
DpnI GATC 2 cut(s) 108, 333
DpnII GATC 2 cut(s) 106, 331
DraI TTTAAA 2 cut(s) 433, 829
Eam1104I CTCTTC 5 cut(s) 174, 182, 891, 1194, 1391
EarI CTCTTC 5 cut(s) 174, 182, 891, 1194, 1391
Ecl136II GAGCTC 1 cut(s) 1361
Eco130I CCWWGG 3 cut(s) 129, 987, 1226
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 1363
Eco47III AGCGCT 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 1361
Eco57I CTGAAG 2 cut(s) 206, 476
Eco88I CYCGRG 2 cut(s) 500, 548
EcoICRI GAGCTC 1 cut(s) 1361
EcoO109I RGGNCCY 1 cut(s) 1230
EcoRII CCWGG 3 cut(s) 638, 650, 852
EcoT14I CCWWGG 3 cut(s) 129, 987, 1226
EcoT38I GRGCYC 1 cut(s) 1363
ErhI CCWWGG 3 cut(s) 129, 987, 1226
Esp3I CGTCTC 1 cut(s) 585
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 138, 302, 558, 1026
FokI GGATG 4 cut(s) 205, 428, 910, 1353
FriOI GRGCYC 1 cut(s) 1363
Fsp4HI GCNGC 4 cut(s) 138, 302, 558, 1026
FspBI CTAG 2 cut(s) 1227, 1266
GlaI GCGC 1 cut(s) 254
GluI GCNGC 4 cut(s) 138, 302, 558, 1026
GsuI CTGGAG 2 cut(s) 189, 1384
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 5 cut(s) 217, 462, 1025, 1065, 1231
HapII CCGG 1 cut(s) 501
HgaI GACGC 3 cut(s) 9, 530, 1187
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 352, 716
HinfI GANTC 6 cut(s) 437, 551, 683, 983, 1044, 1397
HpaII CCGG 1 cut(s) 501
HphI GGTGA 2 cut(s) 116, 1298
Hpy166II GTNNAC 3 cut(s) 310, 882, 1299
Hpy188I TCNGA 5 cut(s) 25, 495, 750, 842, 1309
Hpy188III TCNNGA 5 cut(s) 59, 548, 703, 1048, 1328
Hpy8I GTNNAC 3 cut(s) 310, 882, 1299
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 5 cut(s) 169, 228, 541, 775, 937
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4IV ACGT 2 cut(s) 73, 1261
HpyCH4V TGCA 9 cut(s) 232, 301, 339, 393, 557, 713, 736, 815, 1097
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 8 cut(s) 24, 256, 350, 365, 758, 1011, 1347, 1372
HpySE526I ACGT 2 cut(s) 73, 1261
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 331
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 3 cut(s) 208, 1348, 1366
Lsp1109I GCAGC 2 cut(s) 313, 569
LweI GCATC 3 cut(s) 486, 1037, 1106
MaeI CTAG 2 cut(s) 1227, 1266
MaeII ACGT 2 cut(s) 73, 1261
MaeIII GTNAC 5 cut(s) 64, 598, 796, 973, 1132
MalI GATC 2 cut(s) 108, 333
MbiI CCGCTC 1 cut(s) 542
MboI GATC 2 cut(s) 106, 331
MhlI GDGCHC 2 cut(s) 1320, 1363
MluCI AATT 6 cut(s) 82, 227, 294, 706, 765, 1035
MlyI GAGTC 4 cut(s) 560, 977, 1038, 1391
MmeI TCCRAC 1 cut(s) 937
MnlI CCTC 7 cut(s) 183, 493, 765, 1228, 1369, 1374, 1394
MseI TTAA 5 cut(s) 402, 432, 467, 569, 828
MspCI CTTAAG 1 cut(s) 568
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 5 cut(s) 501, 502, 640, 652, 854
Mva1269I GAATGC 1 cut(s) 1115
MvaI CCWGG 3 cut(s) 640, 652, 854
MwoI GCNNNNNNNGC 1 cut(s) 634
NciI CCSGG 2 cut(s) 501, 502
NcoI CCATGG 2 cut(s) 129, 987
NdeI CATATG 1 cut(s) 121
NdeII GATC 2 cut(s) 106, 331
NlaIV GGNNCC 2 cut(s) 204, 1232
NmeAIII GCCGAG 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 1132
NspI RCATGY 1 cut(s) 637
NspV TTCGAA 1 cut(s) 276
PaeI GCATGC 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 548
PagI TCATGA 2 cut(s) 1047, 1327
PceI AGGCCT 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 1 cut(s) 1115
PfeI GAWTC 2 cut(s) 437, 683
PflMI CCANNNNNTGG 1 cut(s) 993
PfoI TCCNGGA 1 cut(s) 852
PkrI GCNGC 4 cut(s) 139, 303, 559, 1027
PleI GAGTC 4 cut(s) 559, 977, 1038, 1391
PpsI GAGTC 4 cut(s) 559, 977, 1038, 1391
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 1363
Psp6I CCWGG 3 cut(s) 638, 650, 852
PspGI CCWGG 3 cut(s) 638, 650, 852
PspN4I GGNNCC 2 cut(s) 204, 1232
PspPI GGNCC 1 cut(s) 1230
PstI CTGCAG 1 cut(s) 559
RsaI GTAC 2 cut(s) 456, 881
RsaNI GTAC 2 cut(s) 455, 880
SacI GAGCTC 1 cut(s) 1363
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 5 cut(s) 402, 432, 467, 569, 828
SatI GCNGC 4 cut(s) 138, 302, 558, 1026
Sau3AI GATC 2 cut(s) 106, 331
Sau96I GGNCC 1 cut(s) 1230
SchI GAGTC 4 cut(s) 560, 977, 1038, 1391
ScrFI CCNGG 5 cut(s) 501, 502, 640, 652, 854
SduI GDGCHC 2 cut(s) 1320, 1363
SfaNI GCATC 3 cut(s) 486, 1037, 1106
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 548
SmaI CCCGGG 1 cut(s) 502
SmlI CTYRAG 4 cut(s) 548, 568, 834, 1319
SmoI CTYRAG 4 cut(s) 548, 568, 834, 1319
SphI GCATGC 1 cut(s) 637
Sse9I AATT 6 cut(s) 82, 227, 294, 706, 765, 1035
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 4 cut(s) 137, 540, 565, 1026
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 1227, 1266
SstI GAGCTC 1 cut(s) 1363
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 5 cut(s) 499, 500, 638, 650, 852
StyI CCWWGG 3 cut(s) 129, 987, 1226
TaaI ACNGT 1 cut(s) 733
TaiI ACGT 2 cut(s) 76, 1264
TaqI TCGA 5 cut(s) 240, 276, 358, 549, 1155
TasI AATT 6 cut(s) 82, 227, 294, 706, 765, 1035
TatI WGTACW 2 cut(s) 454, 879
TauI GCSGC 2 cut(s) 140, 1028
TfiI GAWTC 2 cut(s) 437, 683
Tru1I TTAA 5 cut(s) 402, 432, 467, 569, 828
Tru9I TTAA 5 cut(s) 402, 432, 467, 569, 828
TscAI CASTG 3 cut(s) 349, 736, 1110
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 2 cut(s) 301, 557
Tsp45I GTSAC 1 cut(s) 1132
TspMI CCCGGG 1 cut(s) 500
TspRI CASTG 3 cut(s) 349, 736, 1110
Van91I CCANNNNNTGG 1 cut(s) 993
Vha464I CTTAAG 1 cut(s) 568
XapI RAATTY 2 cut(s) 294, 706
XceI RCATGY 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 548
XmaI CCCGGG 1 cut(s) 500
XmaJI CCTAGG 1 cut(s) 1226
XspI CTAG 2 cut(s) 1227, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.