RLG00000002890

(-)-germacrene D synthase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
41319421 .. 41328449
9029 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002890

Sequence Viewer

Length: 1761 bp
ATGACAAAATTTAAAACGAAGAATAGCATTTGTTATCGACCTGCATGTGAAAAACATGGCTTTCCGTCAAAAAGAGAACATGTGGTCATGGATCCTGTGAGAAAGATAATGTTGCATGTGGTTGTCTTTGCAACCTTTCTTTTATTTTTCTGGCCCACTCGAGTACTGGTACTCGTCTCATCTCGCACCACATGTCTCGTTAACATTAACTTACTGATCCTTCTGAGTTGCAAGCGTAGCTATTCGGCTATTCCATGCATTATAAATAGCAAGGCAGCTCTTTTCCTCAACTCAAGCAAGCCATTCATTCCTGTACGTAATGATAAAATGTCCTTCCAAGTTTTAGCTTCCCCAGCTCAAGCGCCAGATACCGTTGCTGATGTTAAGCGACATTCAGCTAATAATTATACCCCAAACATTTGGGGTGATCATTTTCTCTATTATGCTATCATGGAAGTTGACATTAAACTTGAGCAACACGTCCGAGAACTGAAAGATCAGGTGAAGAGGATGCTAATGGATCCCGTTAAAAAACCTTCACAACAATTGGACTTGGTTGATAACATTCAACGCCTAGGTGTGTCCTATCATTTTGAAAATGAGATTGATGGAATTTTGAAACAAATTCACCACAACTACTCAAATGGTAGTGATGATGACCTTTACACTACTGCTCTCCGTTTTCGGCTACTTAGACAACAAGGTTATAGCGTTTCATGCGATATGTTCAACAAATTCAGGGAAGGAAATGATCAAAAATTTAAGGCATCTCTTCTGAGTGATGTATCAGGGCTATTAAGCTTGTACGAAGCCACCCATCTTAGGATACGCGGAGAAGACCTACTTGAAGAGGCACTAGACTTCACCACCACTCATCTTGAGTCGATCAAACACAGTTTAAGCCCTTCACTTTCAAAACAAGCAGTCCATTCCTTAAATCAGGCACTTCGGAGGGGCATCCCGAGGGTGGAAGCAAGATATTACTTGTCAATCTACGCAGAACATGATTCACATAACGAAACTCTCCTAACTTTTGCAAAATTAGATTTCAACCTACTGCAACAAGTCCATCAAAAGGAACTATGTGAAATTACAAGGTGGTGGAAGGACTTGGACATCACAAACAAGCTGCCATTCACAAGAGACAGAATTACCGAAATTTACTTCATCTGGGCTTTGTCAGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACATCATGCAAAGTCACTGCCATGATGGCTATCCTCGATGACATTTATGATACCTATGGCACACTCGAAGAACTAGAGCTCTTTACTGAAGTTATTCACAGGTGGGATATCTGTGCCATAGATCCATTGCCAGATTATATGAAAGTCTGTTATAAGGCATTGTTAGAAGTCTATACTGAAATTGAAGAAGAGCTTGCAAAGGAGGGAAAGTTGTATCGAATCCACTATGCCAGAGAAGCTATGAAAAAACAAGCTGAAGCTTACTTCCTTGAAGCTAAATGGCTGCACCACCAATACATACCAACGATGGATGAATATATGGCCCTATCATTATTGACCTCAGGCTACCCTCAACTAATAACAACATCTTTTGTTGCAATGGGAGATATTGCTACACAAGACTCCTTCGATTGGTTGGACACTTATCCCAGGGCTGTAAAAGGGGCTGCAGTAGTTGCTCGACTCATGGATGATATAGCGGACCACAAGGTACACACATACATACATATATATATATATATAGTCCACCAATTCCATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

68.25

Weight (kDa)

6.5

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 140 - 312 2.1e-56 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 369 - 570 4.5e-76 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 410 - 569 5.1e-43 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 263, 1371
Acc36I ACCTGC 1 cut(s) 49
AccII CGCG 1 cut(s) 831
AciI CCGC 2 cut(s) 831, 1697
AclWI GGATC 6 cut(s) 86, 99, 211, 515, 528, 1334
AcsI RAATTY 6 cut(s) 8, 612, 624, 734, 758, 1158
AcuI CTGAAG 2 cut(s) 1326, 1494
AfaI GTAC 6 cut(s) 165, 171, 315, 806, 1187, 1710
AfiI CCNNNNNNNGG 5 cut(s) 822, 967, 1075, 1212, 1629
AflIII ACRYGT 3 cut(s) 79, 191, 478
AgsI TTSAA 9 cut(s) 569, 596, 619, 730, 848, 915, 1051, 1403, 1490
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 1 cut(s) 1646
Alw21I GWGCWC 1 cut(s) 1299
Alw26I GTCTC 3 cut(s) 181, 200, 1137
AlwI GGATC 6 cut(s) 86, 99, 211, 515, 528, 1334
Ama87I CYCGRG 2 cut(s) 159, 961
AoxI GGCC 2 cut(s) 152, 1539
ApeKI GCWGC 4 cut(s) 275, 1129, 1501, 1664
ApoI RAATTY 6 cut(s) 8, 612, 624, 734, 758, 1158
Asp700I GAANNNNTTC 1 cut(s) 1311
AspA2I CCTAGG 1 cut(s) 574
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 3 cut(s) 153, 1540, 1699
AsuHPI GGTGA 4 cut(s) 437, 514, 620, 856
AsuII TTCGAA 1 cut(s) 1191
AvaI CYCGRG 2 cut(s) 159, 961
AvaII GGWCC 1 cut(s) 1699
AvrII CCTAGG 1 cut(s) 574
AxyI CCTNAGG 1 cut(s) 1558
BamHI GGATCC 2 cut(s) 91, 520
BanII GRGCYC 1 cut(s) 1299
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 1299
BbvI GCAGC 4 cut(s) 287, 1116, 1488, 1651
BccI CCATC 5 cut(s) 602, 825, 1077, 1237, 1519
BciT130I CCWGG 1 cut(s) 1648
BciVI GTATCC 1 cut(s) 819
BclI TGATCA 2 cut(s) 427, 751
BcoDI GTCTC 3 cut(s) 181, 200, 1137
BfaI CTAG 4 cut(s) 575, 857, 1212, 1292
BfmI CTRYAG 1 cut(s) 1665
BfoI RGCGCY 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 49
BfuI GTATCC 1 cut(s) 819
BglI GCCNNNNNGGC 1 cut(s) 1244
BisI GCNGC 4 cut(s) 276, 1130, 1502, 1665
BlnI CCTAGG 1 cut(s) 574
BlsI GCNGC 4 cut(s) 277, 1131, 1503, 1666
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 1648
Bme18I GGWCC 1 cut(s) 1699
BmeT110I CYCGRG 2 cut(s) 159, 961
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 3 cut(s) 153, 1540, 1699
BmiI GGNNCC 2 cut(s) 93, 522
BmrFI CCNGG 1 cut(s) 1648
BmsI GCATC 3 cut(s) 501, 776, 966
BpiI GAAGAC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 1191
BpuEI CTTGAG 4 cut(s) 277, 342, 491, 899
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 1247
BsaJI CCNNGG 4 cut(s) 574, 962, 1646, 1647
BsaXI ACNNNNNCTCC 2 cut(s) 1412, 1442
Bsc4I CCNNNNNNNGG 5 cut(s) 822, 967, 1075, 1212, 1629
Bse1I ACTGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 1558
Bse3DI GCAATG 2 cut(s) 1343, 1602
Bse8I GATNNNNATC 1 cut(s) 1247
BseBI CCWGG 1 cut(s) 1648
BseDI CCNNGG 4 cut(s) 574, 962, 1646, 1647
BseGI GGATG 4 cut(s) 516, 957, 1534, 1693
BseJI GATNNNNATC 1 cut(s) 1247
BseLI CCNNNNNNNGG 5 cut(s) 822, 967, 1075, 1212, 1629
BseMI GCAATG 2 cut(s) 1343, 1602
BseMII CTCAG 3 cut(s) 215, 767, 1572
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 4 cut(s) 287, 1116, 1488, 1651
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 1487
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 2 cut(s) 154, 1541
BsiHKAI GWGCWC 1 cut(s) 1299
BsiHKCI CYCGRG 2 cut(s) 159, 961
BslI CCNNNNNNNGG 5 cut(s) 822, 967, 1075, 1212, 1629
BsmAI GTCTC 3 cut(s) 181, 200, 1137
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 154, 1541
BsoBI CYCGRG 2 cut(s) 159, 961
Bsp119I TTCGAA 1 cut(s) 1191
Bsp1286I GDGCHC 1 cut(s) 1299
Bsp143I GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
BspACI CCGC 2 cut(s) 831, 1697
BspANI GGCC 2 cut(s) 154, 1541
BspCNI CTCAG 3 cut(s) 216, 768, 1571
BspFNI CGCG 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 93, 522
BspMAI CTGCAG 1 cut(s) 1669
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 6 cut(s) 86, 99, 211, 515, 528, 1334
BspQI GCTCTTC 1 cut(s) 1401
BspT104I TTCGAA 1 cut(s) 1191
BsrDI GCAATG 2 cut(s) 1343, 1602
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 574, 962, 1646, 1647
BssMI GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 1648
Bst4CI ACNGT 2 cut(s) 373, 896
Bst6I CTCTTC 4 cut(s) 500, 777, 843, 1401
BstAPI GCANNNNNTGC 1 cut(s) 1673
BstBAI YACGTR 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 1191
BstC8I GCNNGC 3 cut(s) 233, 299, 1413
BstDEI CTNAG 5 cut(s) 224, 692, 776, 821, 1558
BstENI CCTNNNNNAGG 1 cut(s) 1210
BstF5I GGATG 4 cut(s) 516, 957, 1534, 1693
BstFNI CGCG 1 cut(s) 831
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 8 cut(s) 94, 219, 430, 499, 523, 754, 888, 1342
BstMAI GTCTC 3 cut(s) 181, 200, 1137
BstMBI GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
BstMWI GCNNNNNNNGC 6 cut(s) 237, 353, 717, 1244, 1454, 1673
BstNI CCWGG 1 cut(s) 1648
BstNSI RCATGY 4 cut(s) 48, 83, 119, 195
BstSCI CCNGG 1 cut(s) 1646
BstSFI CTRYAG 1 cut(s) 1665
BstSNI TACGTA 1 cut(s) 317
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 4 cut(s) 287, 1116, 1488, 1651
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 3 cut(s) 91, 520, 1339
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 3 cut(s) 91, 520, 1339
Bsu36I CCTNAGG 1 cut(s) 1558
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 2 cut(s) 154, 1541
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 4 cut(s) 516, 957, 1534, 1693
BtsI GCAGTG 1 cut(s) 1233
BtsIMutI CAGTG 2 cut(s) 1188, 1233
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 233, 299, 1413
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 153, 1540, 1699
Csp6I GTAC 6 cut(s) 164, 170, 314, 805, 1186, 1709
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviQI GTAC 6 cut(s) 164, 170, 314, 805, 1186, 1709
DdeI CTNAG 5 cut(s) 224, 692, 776, 821, 1558
DpnI GATC 8 cut(s) 93, 218, 429, 498, 522, 753, 887, 1341
DpnII GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
DraI TTTAAA 1 cut(s) 13
Eam1104I CTCTTC 4 cut(s) 500, 777, 843, 1401
EarI CTCTTC 4 cut(s) 500, 777, 843, 1401
Ecl136II GAGCTC 1 cut(s) 1297
Eco105I TACGTA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 1299
Eco32I GATATC 1 cut(s) 1327
Eco47I GGWCC 1 cut(s) 1699
Eco53kI GAGCTC 1 cut(s) 1297
Eco57I CTGAAG 2 cut(s) 1326, 1494
Eco81I CCTNAGG 1 cut(s) 1558
Eco88I CYCGRG 2 cut(s) 159, 961
EcoICRI GAGCTC 1 cut(s) 1297
EcoNI CCTNNNNNAGG 1 cut(s) 1210
EcoRII CCWGG 1 cut(s) 1646
EcoRV GATATC 1 cut(s) 1327
EcoT14I CCWWGG 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 1299
ErhI CCWWGG 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 181
FalI AAGNNNNNCTT 4 cut(s) 828, 860, 1395, 1427
FbaI TGATCA 2 cut(s) 427, 751
Fnu4HI GCNGC 4 cut(s) 276, 1130, 1502, 1665
FokI GGATG 4 cut(s) 523, 944, 1541, 1700
FriOI GRGCYC 1 cut(s) 1299
Fsp4HI GCNGC 4 cut(s) 276, 1130, 1502, 1665
FspBI CTAG 4 cut(s) 575, 857, 1212, 1292
GlaI GCGC 1 cut(s) 363
GluI GCNGC 4 cut(s) 276, 1130, 1502, 1665
GsaI CCCAGC 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 154, 1541
HhaI GCGC 1 cut(s) 364
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 2 cut(s) 202, 460
HindII GTYRAC 2 cut(s) 202, 460
HindIII AAGCTT 2 cut(s) 799, 1476
HinfI GANTC 5 cut(s) 881, 1007, 1437, 1619, 1680
HpaI GTTAAC 1 cut(s) 202
HphI GGTGA 4 cut(s) 437, 514, 620, 856
Hpy166II GTNNAC 5 cut(s) 202, 460, 1186, 1711, 1744
Hpy188I TCNGA 4 cut(s) 225, 485, 777, 951
Hpy188III TCNNGA 2 cut(s) 878, 961
Hpy8I GTNNAC 5 cut(s) 202, 460, 1186, 1711, 1744
HpyAV CCTTC 7 cut(s) 230, 343, 546, 737, 915, 1099, 1633
HpyCH4III ACNGT 2 cut(s) 373, 896
HpyCH4IV ACGT 2 cut(s) 316, 480
HpyF10VI GCNNNNNNNGC 6 cut(s) 237, 353, 717, 1244, 1454, 1673
HpyF3I CTNAG 5 cut(s) 224, 692, 776, 821, 1558
HpySE526I ACGT 2 cut(s) 316, 480
HspAI GCGC 1 cut(s) 362
Ksp22I TGATCA 2 cut(s) 427, 751
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
LguI GCTCTTC 1 cut(s) 1401
Lsp1109I GCAGC 4 cut(s) 287, 1116, 1488, 1651
LweI GCATC 3 cut(s) 501, 776, 966
MaeI CTAG 4 cut(s) 575, 857, 1212, 1292
MaeII ACGT 2 cut(s) 316, 480
MaeIII GTNAC 1 cut(s) 1231
MalI GATC 8 cut(s) 93, 218, 429, 498, 522, 753, 887, 1341
MboI GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
MboII GAAGA 8 cut(s) 31, 517, 764, 848, 860, 1298, 1415, 1418
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 3 cut(s) 91, 520, 1339
MhlI GDGCHC 1 cut(s) 1299
MlyI GAGTC 3 cut(s) 890, 1613, 1674
MmeI TCCRAC 1 cut(s) 1614
Mph1103I ATGCAT 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 1311
MslI CAYNNNNRTG 1 cut(s) 1238
MspR9I CCNGG 1 cut(s) 1648
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 1648
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 6 cut(s) 237, 353, 717, 1244, 1454, 1673
NdeII GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
NlaIV GGNNCC 2 cut(s) 93, 522
NmuCI GTSAC 1 cut(s) 1231
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 4 cut(s) 48, 83, 119, 195
NspV TTCGAA 1 cut(s) 1191
PaeR7I CTCGAG 1 cut(s) 159
PasI CCCWGGG 1 cut(s) 1647
PciI ACATGT 2 cut(s) 79, 191
PciSI GCTCTTC 1 cut(s) 1401
PdmI GAANNNNTTC 1 cut(s) 1311
PfeI GAWTC 2 cut(s) 1007, 1437
PkrI GCNGC 4 cut(s) 277, 1131, 1503, 1666
PleI GAGTC 3 cut(s) 889, 1613, 1674
PpsI GAGTC 3 cut(s) 889, 1613, 1674
Ppu21I YACGTR 1 cut(s) 317
PscI ACATGT 2 cut(s) 79, 191
PsiI TTATAA 2 cut(s) 263, 1371
Psp124BI GAGCTC 1 cut(s) 1299
Psp6I CCWGG 1 cut(s) 1646
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 1646
PspN4I GGNNCC 2 cut(s) 93, 522
PspPI GGNCC 3 cut(s) 153, 1540, 1699
PspXI VCTCGAGB 1 cut(s) 159
PstI CTGCAG 1 cut(s) 1669
PsuI RGATCY 3 cut(s) 91, 520, 1339
RsaI GTAC 6 cut(s) 165, 171, 315, 806, 1187, 1710
RsaNI GTAC 6 cut(s) 164, 170, 314, 805, 1186, 1709
RseI CAYNNNNRTG 1 cut(s) 1238
SacI GAGCTC 1 cut(s) 1299
SapI GCTCTTC 1 cut(s) 1401
SatI GCNGC 4 cut(s) 276, 1130, 1502, 1665
Sau3AI GATC 8 cut(s) 91, 216, 427, 496, 520, 751, 885, 1339
Sau96I GGNCC 3 cut(s) 153, 1540, 1699
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 3 cut(s) 890, 1613, 1674
ScrFI CCNGG 1 cut(s) 1648
SduI GDGCHC 1 cut(s) 1299
SfaNI GCATC 3 cut(s) 501, 776, 966
SfcI CTRYAG 1 cut(s) 1665
Sfr274I CTCGAG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 1191
SinI GGWCC 1 cut(s) 1699
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 1238
SmlI CTYRAG 5 cut(s) 159, 292, 357, 470, 878
SmoI CTYRAG 5 cut(s) 159, 292, 357, 470, 878
SnaBI TACGTA 1 cut(s) 317
SsiI CCGC 2 cut(s) 831, 1697
SspI AATATT 1 cut(s) 1202
SspMI CTAG 4 cut(s) 575, 857, 1212, 1292
SstI GAGCTC 1 cut(s) 1299
StyD4I CCNGG 1 cut(s) 1646
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 2 cut(s) 373, 896
TaiI ACGT 2 cut(s) 319, 483
TaqI TCGA 9 cut(s) 37, 160, 884, 1191, 1254, 1284, 1435, 1626, 1678
TatI WGTACW 2 cut(s) 163, 1185
TfiI GAWTC 2 cut(s) 1007, 1437
TscAI CASTG 2 cut(s) 1188, 1240
TseFI GTSAC 1 cut(s) 1231
TseI GCWGC 4 cut(s) 275, 1129, 1501, 1664
Tsp45I GTSAC 1 cut(s) 1231
TspDTI ATGAA 6 cut(s) 295, 705, 1156, 1373, 1475, 1545
TspGWI ACGGA 2 cut(s) 54, 668
TspRI CASTG 2 cut(s) 1188, 1240
VpaK11BI GGWCC 1 cut(s) 1699
XagI CCTNNNNNAGG 1 cut(s) 1210
XapI RAATTY 6 cut(s) 8, 612, 624, 734, 758, 1158
XceI RCATGY 4 cut(s) 48, 83, 119, 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 1311
XspI CTAG 4 cut(s) 575, 857, 1212, 1292
ZrmI AGTACT 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.