RchiOBHm_Chr5g0036921

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000053
Physical Location & Seq
Forward (+)
31285176 .. 31287801
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31570

Sequence Viewer

Length: 1686 bp
ATGCCTGCTCAAATACTAGAATCTGAAGCTCCAACACAAAATGCCACTCCTGAGGTTAATCGACGTTCAGCTAATTTTTCTCCTAGCATTTGGGGCGATCAGTTTCTCTCATATGCTTCTAATAAGGAAAGCAATATTGAAACTGAGCAACATCTCCGAGAATTCAAGGCAGAAGTGAACACGATGCTGAAGGCTCCGGTTGAAAAGCTTTCACAAAAGTTGGATTTGATTGATAACATTCTGCGCTTAGGAGTTTTCCGCCATTTTGAAAATGAGATCCACGAAATTTTACAGCAAATTCACAACAATTCTTATGTCAACTGTGACGACCTGGAGAGCGATGATGAGCTCTACACTGTGGCGCTTCGTTTTCGATTACTAAGACAACAGGGTTATCAAGTTTCATGCAATGTGTTTAGGAAGTTCATGGACTATGATGGAAACTTTAAGGAATCACTTATTGAAGATGTCCCGGGACTATTAAGTTTGTATGAAGCCACACATCTTAGGACACACGGGGAAGAACTGCTTGATGATGCATTGACCTTCACCTCCACTCATCTTGAGTCGGCAACTCGCCATAGTTTAAACCCCCTGGTTATGAAGCAAGTAACTCATGCCTTGTATCAGCCTCTCTGGAAGGGTGTAACTAGACTCGAAGCCAGACATCACTTGTCTGCTTACCCGGATCACAATTCACATAATGAAACACTCTTGAATTTTGCAAAGTTGGATTTCAATCTACTGCAGCAAGTCCATCAGAAAGAACTAAGTGATATTGCAAGGTGGTGGAAGGACTTGGACTTTGCAAACAAGCTGCCGTTTGCAAGAGACAGAGTGGTTGAGTGTTACTTCTGGACTTTGGGAGTCTACTTTGAGCCCCAATATCACTTTGGTAGGACGACATTTTGCAAAGTAATTGCCATGACATCCATTATTGATGACATTTATGACGTGTATGGCACGCTTGAAGAGGCAGAACTTTTTACTGAAGCTATTGAGAGATGGGACATCTCTGCCATGGATATACTGCCCGAGTATATGAAAATCTGTTACCAAGCACTGTTGGATGTCTATCGTGAAATGGAAGAAAAGCTTGCAATTGAGGGCAACTTATATGCCATCCACTACGCGAGAGAATCAATGAAAATCCAGGTTAGAGCTTACTTCCGAGAAGCCAAATGGTTCCACCAGAAATACACGCCAACCTTGGATGAATATATGTCATTAGCACTTGTTACATCTGGCTACTTTATGCTAGCAACCATATCCTTTCTGGGAATGGGGGATATTGTCACAAGAGACTCCTTTGAGTGGTTGTTCAATAGTCCTAAAATTGTCAAGGCTTCAGAGTTAGTTGGCAGACTCATGGATGACATGGCTTCTCATAAGTTTGAGCAAAAGAGAGGACATGTCGCCTCAGCTGTGGAATGCTACATGAAAGAATATGGTGTCACAGAAGAAGAAGCAAAAGTCGCACTGACTAAACAAGTGGATGATGCTTGGAAGGTCATAAATGAAGAATTGCTGAAGATTAACACTATTCCAAGGCCCCTCCTATTGCGAGTTCTCAATCTCTCTCGGGTGATTGAAGTTGTATATAAGAATGAAGATGGGTATACTCATGCAGGTGGTGTGCTCAAGGGTTTTGTGGCTTCTATGCTTATCAAACCTGTGCCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

561

Amino Acids

65.14

Weight (kDa)

5.36

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 208 1.6e-56 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 265 - 503 1.2e-104 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 305 - 503 1.7e-63 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1619
Acc36I ACCTGC 1 cut(s) 1619
AccI GTMKAC 2 cut(s) 870, 1619
AccII CGCG 1 cut(s) 1133
AciI CCGC 1 cut(s) 259
AclWI GGATC 2 cut(s) 271, 696
AcsI RAATTY 4 cut(s) 161, 285, 297, 718
AcuI CTGAAG 5 cut(s) 45, 209, 1011, 1332, 1550
AfiI CCNNNNNNNGG 1 cut(s) 1314
AflIII ACRYGT 2 cut(s) 954, 1411
AjiI CACGTC 1 cut(s) 955
AjnI CCWGG 3 cut(s) 330, 594, 1152
AluBI AGCT 9 cut(s) 29, 71, 208, 349, 817, 995, 1096, 1163, 1424
AluI AGCT 9 cut(s) 29, 71, 208, 349, 817, 995, 1096, 1163, 1424
Alw21I GWGCWC 2 cut(s) 351, 1641
Alw26I GTCTC 2 cut(s) 825, 1296
AlwI GGATC 2 cut(s) 271, 696
Ama87I CYCGRG 3 cut(s) 472, 1034, 1581
AoxI GGCC 1 cut(s) 1550
ApeKI GCWGC 2 cut(s) 748, 817
ApoI RAATTY 4 cut(s) 161, 285, 297, 718
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AspLEI GCGC 2 cut(s) 246, 364
AspS9I GGNCC 1 cut(s) 1551
AsuC2I CCSGG 3 cut(s) 473, 474, 686
AsuHPI GGTGA 2 cut(s) 541, 1597
AsuNHI GCTAGC 1 cut(s) 1258
AvaI CYCGRG 3 cut(s) 472, 1034, 1581
AxyI CCTNAGG 1 cut(s) 51
BanII GRGCYC 2 cut(s) 351, 882
Bbv12I GWGCWC 2 cut(s) 351, 1641
BbvCI CCTCAGC 1 cut(s) 1420
BbvI GCAGC 2 cut(s) 760, 804
BccI CCATC 5 cut(s) 431, 765, 999, 1130, 1607
BceAI ACGGC 1 cut(s) 805
BciT130I CCWGG 3 cut(s) 332, 596, 1154
BcnI CCSGG 3 cut(s) 473, 474, 686
BcoDI GTCTC 2 cut(s) 825, 1296
BfaI CTAG 4 cut(s) 17, 84, 651, 1259
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 1619
BisI GCNGC 2 cut(s) 749, 818
BlsI GCNGC 2 cut(s) 750, 819
Bme1390I CCNGG 6 cut(s) 332, 473, 474, 596, 686, 1154
BmeT110I CYCGRG 3 cut(s) 472, 1034, 1581
BmgBI CACGTC 1 cut(s) 955
BmgT120I GGNCC 1 cut(s) 1551
BmiI GGNNCC 3 cut(s) 195, 1187, 1553
BmrFI CCNGG 6 cut(s) 332, 473, 474, 596, 686, 1154
BmsI GCATC 3 cut(s) 174, 526, 1489
BmtI GCTAGC 1 cut(s) 1262
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 2 cut(s) 247, 1420
BpuEI CTTGAG 2 cut(s) 584, 1625
BpuMI CCSGG 3 cut(s) 473, 474, 686
BsaBI GATNNNNATC 2 cut(s) 738, 1074
BsaJI CCNNGG 5 cut(s) 472, 594, 1020, 1209, 1547
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 1314
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 415
Bse8I GATNNNNATC 2 cut(s) 738, 1074
BseBI CCWGG 3 cut(s) 332, 596, 1154
BseDI CCNNGG 5 cut(s) 472, 594, 1020, 1209, 1547
BseGI GGATG 6 cut(s) 929, 1075, 1122, 1219, 1378, 1501
BseJI GATNNNNATC 2 cut(s) 738, 1074
BseLI CCNNNNNNNGG 1 cut(s) 1314
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 3 cut(s) 42, 135, 1434
BseXI GCAGC 2 cut(s) 760, 804
Bsh1236I CGCG 1 cut(s) 1133
BshFI GGCC 1 cut(s) 1552
BsiHKAI GWGCWC 2 cut(s) 351, 1641
BsiHKCI CYCGRG 3 cut(s) 472, 1034, 1581
BsiSI CCGG 3 cut(s) 197, 473, 686
BslFI GGGAC 3 cut(s) 455, 489, 1022
BslI CCNNNNNNNGG 1 cut(s) 1314
BsmAI GTCTC 2 cut(s) 825, 1296
BsmFI GGGAC 3 cut(s) 455, 489, 1022
BsmI GAATGC 1 cut(s) 1436
BsnI GGCC 1 cut(s) 1552
BsoBI CYCGRG 3 cut(s) 472, 1034, 1581
Bsp1286I GDGCHC 3 cut(s) 351, 882, 1641
Bsp143I GATC 3 cut(s) 97, 276, 688
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 1552
BspCNI CTCAG 3 cut(s) 43, 136, 1433
BspFNI CGCG 1 cut(s) 1133
BspLI GGNNCC 3 cut(s) 195, 1187, 1553
BspMAI CTGCAG 1 cut(s) 750
BspMI ACCTGC 1 cut(s) 1619
BspOI GCTAGC 1 cut(s) 1262
BspPI GGATC 2 cut(s) 271, 696
BsrDI GCAATG 1 cut(s) 415
BssECI CCNNGG 5 cut(s) 472, 594, 1020, 1209, 1547
BssMI GATC 3 cut(s) 97, 276, 688
BssNAI GTATAC 1 cut(s) 1620
BssT1I CCWWGG 3 cut(s) 1020, 1209, 1547
Bst1107I GTATAC 1 cut(s) 1620
Bst2UI CCWGG 3 cut(s) 332, 596, 1154
Bst4CI ACNGT 3 cut(s) 323, 358, 1065
Bst6I CTCTTC 1 cut(s) 966
BstC8I GCNNGC 4 cut(s) 6, 965, 1098, 1260
BstDEI CTNAG 7 cut(s) 51, 144, 247, 380, 506, 770, 1420
BstDSI CCRYGG 1 cut(s) 1020
BstF5I GGATG 6 cut(s) 929, 1075, 1122, 1219, 1378, 1501
BstFNI CGCG 1 cut(s) 1133
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 246, 364
BstKTI GATC 3 cut(s) 100, 279, 691
BstMAI GTCTC 2 cut(s) 825, 1296
BstMBI GATC 3 cut(s) 97, 276, 688
BstMWI GCNNNNNNNGC 2 cut(s) 93, 1475
BstNI CCWGG 3 cut(s) 332, 596, 1154
BstNSI RCATGY 1 cut(s) 1415
BstSCI CCNGG 6 cut(s) 330, 471, 472, 594, 684, 1152
BstSFI CTRYAG 1 cut(s) 746
BstUI CGCG 1 cut(s) 1133
BstV1I GCAGC 2 cut(s) 760, 804
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BstZ17I GTATAC 1 cut(s) 1620
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 1552
BtgI CCRYGG 1 cut(s) 1020
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 6 cut(s) 929, 1075, 1122, 1219, 1378, 1501
BtsIMutI CAGTG 3 cut(s) 354, 1061, 1478
BveI ACCTGC 1 cut(s) 1619
Cac8I GCNNGC 4 cut(s) 6, 965, 1098, 1260
CfoI GCGC 2 cut(s) 246, 364
Cfr13I GGNCC 1 cut(s) 1551
Cfr9I CCCGGG 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 544, 579
DdeI CTNAG 7 cut(s) 51, 144, 247, 380, 506, 770, 1420
DpnI GATC 3 cut(s) 99, 278, 690
DpnII GATC 3 cut(s) 97, 276, 688
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 966
EarI CTCTTC 1 cut(s) 966
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 3 cut(s) 1020, 1209, 1547
Eco24I GRGCYC 2 cut(s) 351, 882
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 5 cut(s) 45, 209, 1011, 1332, 1550
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 3 cut(s) 472, 1034, 1581
EcoICRI GAGCTC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 1551
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 330, 594, 1152
EcoT14I CCWWGG 3 cut(s) 1020, 1209, 1547
EcoT22I ATGCAT 1 cut(s) 541
EcoT38I GRGCYC 2 cut(s) 351, 882
ErhI CCWWGG 3 cut(s) 1020, 1209, 1547
FalI AAGNNNNNCTT 4 cut(s) 513, 545, 1080, 1112
FaqI GGGAC 3 cut(s) 455, 489, 1022
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 2 cut(s) 870, 1619
Fnu4HI GCNGC 2 cut(s) 749, 818
FokI GGATG 6 cut(s) 916, 1082, 1109, 1226, 1385, 1508
FriOI GRGCYC 2 cut(s) 351, 882
Fsp4HI GCNGC 2 cut(s) 749, 818
FspBI CTAG 4 cut(s) 17, 84, 651, 1259
GlaI GCGC 2 cut(s) 245, 363
GluI GCNGC 2 cut(s) 749, 818
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 1 cut(s) 1552
HapII CCGG 3 cut(s) 197, 473, 686
HhaI GCGC 2 cut(s) 246, 364
Hin6I GCGC 2 cut(s) 244, 362
HinP1I GCGC 2 cut(s) 244, 362
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 206, 1094
HinfI GANTC 8 cut(s) 20, 452, 566, 654, 867, 1139, 1304, 1365
HpaII CCGG 3 cut(s) 197, 473, 686
HphI GGTGA 2 cut(s) 541, 1597
Hpy166II GTNNAC 4 cut(s) 178, 319, 871, 1620
Hpy188I TCNGA 5 cut(s) 25, 158, 762, 1172, 1351
Hpy188III TCNNGA 6 cut(s) 50, 563, 637, 715, 856, 1079
Hpy8I GTNNAC 4 cut(s) 178, 319, 871, 1620
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 5 cut(s) 184, 556, 634, 787, 1501
HpyCH4III ACNGT 3 cut(s) 323, 358, 1065
HpyCH4IV ACGT 2 cut(s) 64, 954
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 1475
HpyF3I CTNAG 7 cut(s) 51, 144, 247, 380, 506, 770, 1420
HpySE526I ACGT 2 cut(s) 64, 954
HspAI GCGC 2 cut(s) 244, 362
Kzo9I GATC 3 cut(s) 97, 276, 688
LmnI GCTCC 2 cut(s) 34, 199
Lsp1109I GCAGC 2 cut(s) 760, 804
LweI GCATC 3 cut(s) 174, 526, 1489
MaeI CTAG 4 cut(s) 17, 84, 651, 1259
MaeII ACGT 2 cut(s) 64, 954
MaeIII GTNAC 8 cut(s) 323, 610, 646, 848, 1052, 1237, 1294, 1453
MalI GATC 3 cut(s) 99, 278, 690
MboI GATC 3 cut(s) 97, 276, 688
MboII GAAGA 9 cut(s) 476, 533, 983, 1100, 1472, 1475, 1532, 1543, 1622
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 3 cut(s) 351, 882, 1641
MlyI GAGTC 5 cut(s) 575, 648, 876, 1298, 1359
MmeI TCCRAC 4 cut(s) 56, 201, 711, 1047
MnlI CCTC 8 cut(s) 46, 562, 642, 967, 1099, 1400, 1429, 1565
Mph1103I ATGCAT 1 cut(s) 541
MseI TTAA 5 cut(s) 57, 447, 482, 587, 1536
MslI CAYNNNNRTG 1 cut(s) 1629
MspA1I CMGCKG 1 cut(s) 1424
MspI CCGG 3 cut(s) 197, 473, 686
MspR9I CCNGG 6 cut(s) 332, 473, 474, 596, 686, 1154
MssI GTTTAAAC 1 cut(s) 588
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 1 cut(s) 1436
MvaI CCWGG 3 cut(s) 332, 596, 1154
MvnI CGCG 1 cut(s) 1133
MwoI GCNNNNNNNGC 2 cut(s) 93, 1475
NciI CCSGG 3 cut(s) 473, 474, 686
NcoI CCATGG 1 cut(s) 1020
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 97, 276, 688
NheI GCTAGC 1 cut(s) 1258
NlaIV GGNNCC 3 cut(s) 195, 1187, 1553
NmuCI GTSAC 3 cut(s) 323, 1294, 1453
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 1 cut(s) 1415
PaqCI CACCTGC 1 cut(s) 1619
PciI ACATGT 1 cut(s) 1411
PctI GAATGC 1 cut(s) 1436
PfeI GAWTC 3 cut(s) 20, 452, 1139
PkrI GCNGC 2 cut(s) 750, 819
PleI GAGTC 5 cut(s) 574, 648, 875, 1298, 1359
PmeI GTTTAAAC 1 cut(s) 588
PpsI GAGTC 5 cut(s) 574, 648, 875, 1298, 1359
PscI ACATGT 1 cut(s) 1411
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 330, 594, 1152
PspGI CCWGG 3 cut(s) 330, 594, 1152
PspN4I GGNNCC 3 cut(s) 195, 1187, 1553
PspPI GGNCC 1 cut(s) 1551
PstI CTGCAG 1 cut(s) 750
PsuI RGATCY 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 1424
RseI CAYNNNNRTG 1 cut(s) 1629
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 5 cut(s) 57, 447, 482, 587, 1536
SatI GCNGC 2 cut(s) 749, 818
Sau3AI GATC 3 cut(s) 97, 276, 688
Sau96I GGNCC 1 cut(s) 1551
SchI GAGTC 5 cut(s) 575, 648, 876, 1298, 1359
ScrFI CCNGG 6 cut(s) 332, 473, 474, 596, 686, 1154
SduI GDGCHC 3 cut(s) 351, 882, 1641
SfaNI GCATC 3 cut(s) 174, 526, 1489
SfcI CTRYAG 1 cut(s) 746
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 1629
SmlI CTYRAG 2 cut(s) 563, 1640
SmoI CTYRAG 2 cut(s) 563, 1640
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 136
SspMI CTAG 4 cut(s) 17, 84, 651, 1259
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 6 cut(s) 330, 471, 472, 594, 684, 1152
StyI CCWWGG 3 cut(s) 1020, 1209, 1547
TaaI ACNGT 3 cut(s) 323, 358, 1065
TaiI ACGT 2 cut(s) 67, 957
TaqI TCGA 3 cut(s) 61, 373, 657
TfiI GAWTC 3 cut(s) 20, 452, 1139
Tru1I TTAA 5 cut(s) 57, 447, 482, 587, 1536
Tru9I TTAA 5 cut(s) 57, 447, 482, 587, 1536
TscAI CASTG 3 cut(s) 361, 1068, 1485
TseFI GTSAC 3 cut(s) 323, 1294, 1453
TseI GCWGC 2 cut(s) 748, 817
Tsp45I GTSAC 3 cut(s) 323, 1294, 1453
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 3 cut(s) 361, 1068, 1485
XapI RAATTY 4 cut(s) 161, 285, 297, 718
XceI RCATGY 1 cut(s) 1415
XcmI CCANNNNNNNNNTGG 2 cut(s) 890, 1273
XmaI CCCGGG 1 cut(s) 472
XmiI GTMKAC 2 cut(s) 870, 1619
XspI CTAG 4 cut(s) 17, 84, 651, 1259
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.