Rh6DG166400

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000053
Physical Location & Seq
Forward (+)
25631355 .. 25633215
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG166400.1

Sequence Viewer

Length: 1215 bp
ATGCTAAGCCTCTATGAAGCAACACATCTTAGGGTTAATGGAGAAGATATACTTGAAGAGGCTCTTTTGTTCACCACCACTCAACTCACGTATGTGCTCAAAAGCAATGTAAGCTATCCACTAGTATTAAAGGAACAAATAACTGAAGCTTTGACGAGACCTCTTCGAAAAACTTTGGAGAGATTATGCGCCAAGCGTTATATTTCAATCTACCAAGATGAAGCCTCACACAGTGAATCTCTATTGAAACTTGCAAAGTTGGATTTCAATCTTGTTCAGTCTTTACACCAAAAGGAGCTCTCTGATATTACTAGGTGGTGGAAAGAACTAGACTTTGAAAGGAAATTGTCTTTTGCAAGAGACAGGGTGGTGGAGGTGTTCTTTTGGATGGTGGGAGTATATTTTGAACCCCAGTACTCTATTGGCAGAATCATTATGACAAAAGTGGGTATCCTCCTAACTATTTTGGATGATATCTATGATGCATATGGTACATTTGAAGAACTCATGATCTTCACTCAAGCAATTGACAGGTGGAATGTCAAATGCATAGATGAACTCCCAGACTATTTGAAAATATTCTATTATGAACTTTTGAATCTTTTCGATGAAATTGACAAAGTGATGTCAAAGGAAGGAAGATCATATCGAACTTCATATGCAATAGAAGCTATGAAAGTTCAGGCTCGATCATTTTTCAACGAGGCCCAATGGTTGCAAGAAGGACGCACTCCGAGCATGGAAGAATATATGAGTGTTGCTACAGTTTCTGTTACTTACACTTTTATAACAACCATTTCATTACTTGGCATGGGAGATATTGTAACGAAGGATGCATTTGAGTGGTTGTTGGATGACCCGAAAATTGTTAGCGCTTCCAATATCATTTTTAGGCTCATGGATGACATTGTTTCCACCAAGTTTGAGAAAGAGAGAGGGCATGCACCTTCTAGCATTGATTGCTATATGAAGCAATATGGTGTTTCAGAGCAAGAGACGATTGACCTTTTCGAGAAACAAATTGAGAAATCATGGAAGGATATAAATGAGGAGTTTCTTAAACCAACTACTATGCCAATGCCGGTTCTTATGCGTGTTCTCAATTTAACAAGAGTAGTGGATCTTCTTTACAAGGGAGAAGATGGATTCACACGAGTTGGGAAGATGACCAAAGATAGTGTTGCTGCAGTTATTATCGACTCAGTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

404

Amino Acids

47.06

Weight (kDa)

4.96

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 51 1.2e-10 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 108 - 347 2.1e-96 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 148 - 347 1.7e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AclWI GGATC 1 cut(s) 1128
AcuI CTGAAG 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 2 cut(s) 416, 493
AfeI AGCGCT 1 cut(s) 874
AhlI ACTAGT 1 cut(s) 121
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 4 cut(s) 114, 149, 298, 671
AluI AGCT 4 cut(s) 114, 149, 298, 671
Alw21I GWGCWC 2 cut(s) 99, 300
Alw26I GTCTC 3 cut(s) 151, 354, 989
AlwI GGATC 1 cut(s) 1128
AlwNI CAGNNNCTG 1 cut(s) 770
Aor51HI AGCGCT 1 cut(s) 874
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 1 cut(s) 1184
Asp700I GAANNNNTTC 2 cut(s) 578, 602
AspLEI GCGC 2 cut(s) 191, 875
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 166
BanII GRGCYC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 1107, 1139
BauI CACGAG 1 cut(s) 1152
Bbv12I GWGCWC 2 cut(s) 99, 300
BbvI GCAGC 1 cut(s) 1171
BccI CCATC 2 cut(s) 382, 1136
BciVI GTATCC 1 cut(s) 461
BcoDI GTCTC 3 cut(s) 151, 354, 989
BcuI ACTAGT 1 cut(s) 121
BfaI CTAG 4 cut(s) 122, 312, 329, 951
BfmI CTRYAG 2 cut(s) 762, 1185
BfoI RGCGCY 1 cut(s) 876
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 1 cut(s) 1185
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 1186
BmcAI AGTACT 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 706
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 472, 823
BmuI ACTGGG 1 cut(s) 406
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bse118I RCCGGY 1 cut(s) 1081
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 5 cut(s) 393, 475, 838, 859, 907
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 1215
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 1064
BseXI GCAGC 1 cut(s) 1171
BshFI GGCC 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 99, 300
BsiSI CCGG 1 cut(s) 1082
BsmAI GTCTC 3 cut(s) 151, 354, 989
BsmBI CGTCTC 1 cut(s) 989
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 99, 300
Bsp143I GATC 4 cut(s) 510, 641, 689, 1120
Bsp1720I GCTNAGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 1 cut(s) 1214
BspHI TCATGA 1 cut(s) 507
BspMAI CTGCAG 1 cut(s) 1189
BspPI GGATC 1 cut(s) 1128
BspT104I TTCGAA 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 1081
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 1081
BssMI GATC 4 cut(s) 510, 641, 689, 1120
BssSI CACGAG 1 cut(s) 1152
Bst2BI CACGAG 1 cut(s) 1152
Bst4CI ACNGT 3 cut(s) 233, 766, 1212
Bst6I CTCTTC 2 cut(s) 51, 168
BstAPI GCANNNNNTGC 1 cut(s) 960
BstBAI YACGTR 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 942
BstDEI CTNAG 3 cut(s) 5, 29, 1201
BstF5I GGATG 5 cut(s) 393, 475, 838, 859, 907
BstH2I RGCGCY 1 cut(s) 876
BstHHI GCGC 2 cut(s) 191, 875
BstKTI GATC 4 cut(s) 513, 644, 692, 1123
BstMAI GTCTC 3 cut(s) 151, 354, 989
BstMBI GATC 4 cut(s) 510, 641, 689, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 111, 668, 735, 960
BstNSI RCATGY 1 cut(s) 944
BstSFI CTRYAG 2 cut(s) 762, 1185
BstV1I GCAGC 1 cut(s) 1171
BstX2I RGATCY 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 707
BtsCI GGATG 5 cut(s) 393, 475, 838, 859, 907
BtsIMutI CAGTG 3 cut(s) 238, 1208, 1209
Cac8I GCNNGC 1 cut(s) 942
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 1 cut(s) 507
CfoI GCGC 2 cut(s) 191, 875
Cfr10I RCCGGY 1 cut(s) 1081
Cfr13I GGNCC 1 cut(s) 706
CseI GACGC 1 cut(s) 735
Csp6I GTAC 2 cut(s) 415, 492
CspCI CAANNNNNGTGG 4 cut(s) 904, 939, 1098, 1133
CviAII CATG 6 cut(s) 508, 739, 811, 898, 941, 1032
CviQI GTAC 2 cut(s) 415, 492
DdeI CTNAG 3 cut(s) 5, 29, 1201
DpnI GATC 4 cut(s) 512, 643, 691, 1122
DpnII GATC 4 cut(s) 510, 641, 689, 1120
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 2 cut(s) 51, 168
EarI CTCTTC 2 cut(s) 51, 168
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 151
Eco32I GATATC 1 cut(s) 475
Eco47III AGCGCT 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 298
EcoRV GATATC 1 cut(s) 475
EcoT22I ATGCAT 3 cut(s) 487, 551, 838
EcoT38I GRGCYC 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 989
FaeI CATG 6 cut(s) 511, 742, 814, 901, 944, 1035
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 48, 80
FatI CATG 6 cut(s) 507, 738, 810, 897, 940, 1031
FauNDI CATATG 2 cut(s) 487, 658
Fnu4HI GCNGC 1 cut(s) 1185
FokI GGATG 5 cut(s) 400, 482, 845, 866, 914
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 1185
FspBI CTAG 4 cut(s) 122, 312, 329, 951
GlaI GCGC 2 cut(s) 190, 874
GluI GCNGC 1 cut(s) 1185
HaeII RGCGCY 1 cut(s) 876
HaeIII GGCC 1 cut(s) 707
HapII CCGG 1 cut(s) 1082
HgaI GACGC 1 cut(s) 735
HhaI GCGC 2 cut(s) 191, 875
Hin1II CATG 6 cut(s) 511, 742, 814, 901, 944, 1035
Hin6I GCGC 2 cut(s) 189, 873
HinP1I GCGC 2 cut(s) 189, 873
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 5 cut(s) 236, 429, 598, 1146, 1199
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 304, 735, 988
Hpy188III TCNNGA 2 cut(s) 508, 1012
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 5 cut(s) 629, 716, 823, 957, 1030
HpyCH4III ACNGT 3 cut(s) 233, 766, 1212
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 9 cut(s) 254, 356, 485, 549, 662, 718, 836, 944, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 668, 735, 960
HpyF3I CTNAG 3 cut(s) 5, 29, 1201
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 6 cut(s) 511, 742, 814, 901, 944, 1035
HspAI GCGC 2 cut(s) 189, 873
Kzo9I GATC 4 cut(s) 510, 641, 689, 1120
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 6 cut(s) 349, 425, 517, 576, 668, 1095
Lsp1109I GCAGC 1 cut(s) 1171
LweI GCATC 2 cut(s) 472, 823
MaeI CTAG 4 cut(s) 122, 312, 329, 951
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 772, 823
MalI GATC 4 cut(s) 512, 643, 691, 1122
MboI GATC 4 cut(s) 510, 641, 689, 1120
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 2 cut(s) 99, 300
MluCI AATT 6 cut(s) 344, 525, 612, 864, 1020, 1102
MlyI GAGTC 1 cut(s) 1193
MmeI TCCRAC 2 cut(s) 240, 831
MnlI CCTC 9 cut(s) 20, 52, 171, 235, 367, 464, 697, 929, 1042
Mph1103I ATGCAT 3 cut(s) 487, 551, 838
MroXI GAANNNNTTC 2 cut(s) 578, 602
MseI TTAA 4 cut(s) 36, 128, 1059, 1106
MslI CAYNNNNRTG 2 cut(s) 92, 841
MspI CCGG 1 cut(s) 1082
MunI CAATTG 1 cut(s) 525
MwoI GCNNNNNNNGC 4 cut(s) 111, 668, 735, 960
NdeI CATATG 2 cut(s) 487, 658
NdeII GATC 4 cut(s) 510, 641, 689, 1120
NlaIII CATG 6 cut(s) 511, 742, 814, 901, 944, 1035
NsiI ATGCAT 3 cut(s) 487, 551, 838
NspI RCATGY 1 cut(s) 944
NspV TTCGAA 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 92
PaeI GCATGC 1 cut(s) 944
PagI TCATGA 1 cut(s) 507
PdmI GAANNNNTTC 2 cut(s) 578, 602
PfeI GAWTC 4 cut(s) 236, 429, 598, 1146
PkrI GCNGC 1 cut(s) 1186
PleI GAGTC 1 cut(s) 1193
PpsI GAGTC 1 cut(s) 1193
Ppu21I YACGTR 1 cut(s) 90
PsiI TTATAA 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 706
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 1120
RsaI GTAC 2 cut(s) 416, 493
RsaNI GTAC 2 cut(s) 415, 492
RseI CAYNNNNRTG 2 cut(s) 92, 841
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 36, 128, 1059, 1106
SatI GCNGC 1 cut(s) 1185
Sau3AI GATC 4 cut(s) 510, 641, 689, 1120
Sau96I GGNCC 1 cut(s) 706
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 1 cut(s) 1193
SduI GDGCHC 2 cut(s) 99, 300
SfaNI GCATC 2 cut(s) 472, 823
SfcI CTRYAG 2 cut(s) 762, 1185
SfuI TTCGAA 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 92, 841
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
SpeI ACTAGT 1 cut(s) 121
SphI GCATGC 1 cut(s) 944
Sse9I AATT 6 cut(s) 344, 525, 612, 864, 1020, 1102
SspI AATATT 1 cut(s) 579
SspMI CTAG 4 cut(s) 122, 312, 329, 951
SstI GAGCTC 1 cut(s) 300
TaaI ACNGT 3 cut(s) 233, 766, 1212
TaiI ACGT 1 cut(s) 92
TaqI TCGA 6 cut(s) 166, 606, 649, 688, 1011, 1197
TasI AATT 6 cut(s) 344, 525, 612, 864, 1020, 1102
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 4 cut(s) 236, 429, 598, 1146
Tru1I TTAA 4 cut(s) 36, 128, 1059, 1106
Tru9I TTAA 4 cut(s) 36, 128, 1059, 1106
TscAI CASTG 3 cut(s) 238, 1209, 1215
TseI GCWGC 1 cut(s) 1184
TspDTI ATGAA 9 cut(s) 30, 234, 570, 603, 624, 645, 689, 789, 983
TspRI CASTG 3 cut(s) 238, 1209, 1215
XceI RCATGY 1 cut(s) 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XmnI GAANNNNTTC 2 cut(s) 578, 602
XspI CTAG 4 cut(s) 122, 312, 329, 951
ZrmI AGTACT 1 cut(s) 416
Zsp2I ATGCAT 3 cut(s) 487, 551, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.