FvH4_2g08111

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000071
Physical Location & Seq
Reverse (-)
7011624 .. 7012469
846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08111.t1

Sequence Viewer

Length: 846 bp
ATGGCATTGCTCTTTGTCAACGCAAGTATGCTCTTGAGATTTTGGAAGACCGGCTTCCTGGCATCGAAGCCAGCAACCTTTCCTGCCAACGGTAGCTTGTCACTCATGGAATTAGGGGGAGAACTGCTTTCCGATCCTGCACAGTATCGTAGATTGGTAGGGAGGCTCATCTACTTGACCATAACTCGGCCTGATCTTATGTATGTGGTACATGTTTTGAGTCAGTTCATGAACAAACCTAGACAGCCACATCTTGATGCTGCTTATCAGGTTCTCCGCTACATCAAGGGGACTCCAGGCCAAGGTATGTTCCTTCCTTCAAAAGGGAAATTGAAGCTCACTGCTTTCTGTGACATAGATTGGGCTCGTTGCAAGGACACTCGACGTTCACTCACCGGCTATTGTGTCATGCTTGGAAATGCACCAATCTCTTGGAAAACCAAGAAACAAAGCACTGTAGCTCGAAGTAGTGCGGAAGCAGAGTATCGTTCGATGGCAACAACTTGTTGTGAGATTCCTTGGCTACGCAGTTTGATGAATGATTTAAGGGTAAGGCAGATTGGACCGACACGGCTGTACTGTGATAACCAGGCCGCCATTCACATTGCCAACAACCTCGTTTTTCACGAGCGTACCAAGCATATTGAGATAGATTGTCATATCATCCGAGAAAAGGTGCAGAGAAGTGTTATTCAAACAAGACATGTTTGTACCGCACAACAACCAGCGGACATCTTCACTAAGCCACTCAACACCGAGCAGTTCAAGTTACTTCTTAGCAAGTTGAGAGTCATTAACATCCACTCCAACTTGAGGGGGAGTATTAAAGCAGGAAATCCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

282

Amino Acids

31.91

Weight (kDa)

9.89

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 277, 473, 594, 714, 728
AclWI GGATC 1 cut(s) 128
AfaI GTAC 4 cut(s) 210, 578, 634, 712
AfiI CCNNNNNNNGG 6 cut(s) 89, 186, 302, 323, 673, 813
AflIII ACRYGT 2 cut(s) 211, 703
AgsI TTSAA 4 cut(s) 321, 334, 695, 766
AjnI CCWGG 3 cut(s) 57, 295, 588
AluBI AGCT 3 cut(s) 96, 337, 461
AluI AGCT 3 cut(s) 96, 337, 461
AlwI GGATC 1 cut(s) 128
AoxI GGCC 3 cut(s) 188, 298, 591
ApeKI GCWGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 563
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 563
BaeI ACNNNNGTAYC 2 cut(s) 616, 649
BanII GRGCYC 1 cut(s) 367
BauI CACGAG 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 487
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 3 cut(s) 59, 297, 590
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 2 cut(s) 261, 594
BlsI GCNGC 2 cut(s) 262, 595
Bme1390I CCNGG 3 cut(s) 59, 297, 590
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 563
BmrFI CCNGG 3 cut(s) 59, 297, 590
BmsI GCATC 2 cut(s) 71, 247
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 55, 832
BsaJI CCNNGG 2 cut(s) 301, 518
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 186, 302, 323, 673, 813
Bse118I RCCGGY 2 cut(s) 50, 395
Bse3DI GCAATG 2 cut(s) 5, 603
BseBI CCWGG 3 cut(s) 59, 297, 590
BseDI CCNNGG 2 cut(s) 301, 518
BseGI GGATG 2 cut(s) 663, 798
BseLI CCNNNNNNNGG 6 cut(s) 89, 186, 302, 323, 673, 813
BseMI GCAATG 2 cut(s) 5, 603
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 2 cut(s) 123, 698
BshFI GGCC 3 cut(s) 190, 300, 593
BsiSI CCGG 2 cut(s) 51, 396
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 6 cut(s) 89, 186, 302, 323, 673, 813
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 3 cut(s) 190, 300, 593
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 2 cut(s) 133, 193
BspACI CCGC 5 cut(s) 277, 473, 594, 714, 728
BspANI GGCC 3 cut(s) 190, 300, 593
BspHI TCATGA 1 cut(s) 228
BspPI GGATC 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 5, 603
BsrFI RCCGGY 2 cut(s) 50, 395
BssAI RCCGGY 2 cut(s) 50, 395
BssECI CCNNGG 2 cut(s) 301, 518
BssMI GATC 2 cut(s) 133, 193
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 2 cut(s) 301, 518
Bst2BI CACGAG 1 cut(s) 626
Bst2UI CCWGG 3 cut(s) 59, 297, 590
Bst4CI ACNGT 4 cut(s) 92, 144, 457, 581
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 741, 776
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 663, 798
BstKTI GATC 2 cut(s) 136, 196
BstMBI GATC 2 cut(s) 133, 193
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 3 cut(s) 59, 297, 590
BstNSI RCATGY 2 cut(s) 215, 707
BstSCI CCNGG 3 cut(s) 57, 295, 588
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 432
BsuRI GGCC 3 cut(s) 190, 300, 593
BtsCI GGATG 2 cut(s) 663, 798
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 339, 453
Cac8I GCNNGC 1 cut(s) 72
CciI TCATGA 1 cut(s) 228
Cfr10I RCCGGY 2 cut(s) 50, 395
Cfr13I GGNCC 1 cut(s) 563
Csp6I GTAC 4 cut(s) 209, 577, 633, 711
CviAII CATG 5 cut(s) 106, 212, 229, 409, 704
CviQI GTAC 4 cut(s) 209, 577, 633, 711
DdeI CTNAG 2 cut(s) 741, 776
DpnI GATC 2 cut(s) 135, 195
DpnII GATC 2 cut(s) 133, 193
Eco130I CCWWGG 2 cut(s) 301, 518
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 563
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoRII CCWGG 3 cut(s) 57, 295, 588
EcoT14I CCWWGG 2 cut(s) 301, 518
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 301, 518
FaeI CATG 5 cut(s) 109, 215, 232, 412, 707
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 304
FatI CATG 5 cut(s) 105, 211, 228, 408, 703
Fnu4HI GCNGC 2 cut(s) 261, 594
FokI GGATG 2 cut(s) 650, 785
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 261, 594
FspBI CTAG 1 cut(s) 240
GluI GCNGC 2 cut(s) 261, 594
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 3 cut(s) 190, 300, 593
HapII CCGG 2 cut(s) 51, 396
Hin1II CATG 5 cut(s) 109, 215, 232, 412, 707
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 4 cut(s) 220, 292, 514, 789
HpaII CCGG 2 cut(s) 51, 396
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 19, 389
Hpy188I TCNGA 2 cut(s) 133, 668
Hpy188III TCNNGA 4 cut(s) 34, 229, 254, 626
Hpy8I GTNNAC 2 cut(s) 19, 389
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 323, 327
HpyCH4III ACNGT 4 cut(s) 92, 144, 457, 581
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 140, 372, 422, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 2 cut(s) 741, 776
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 5 cut(s) 109, 215, 232, 412, 707
Kzo9I GATC 2 cut(s) 133, 193
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 71, 247
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 3 cut(s) 99, 350, 768
MalI GATC 2 cut(s) 135, 195
MboI GATC 2 cut(s) 133, 193
MboII GAAGA 2 cut(s) 58, 727
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 2 cut(s) 110, 329
MlyI GAGTC 3 cut(s) 229, 286, 798
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 3 cut(s) 156, 626, 807
MseI TTAA 3 cut(s) 545, 795, 825
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 2 cut(s) 51, 396
MspR9I CCNGG 3 cut(s) 59, 297, 590
MvaI CCWGG 3 cut(s) 59, 297, 590
MwoI GCNNNNNNNGC 1 cut(s) 637
NdeII GATC 2 cut(s) 133, 193
NlaIII CATG 5 cut(s) 109, 215, 232, 412, 707
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 99, 350
NspI RCATGY 2 cut(s) 215, 707
PagI TCATGA 1 cut(s) 228
PciI ACATGT 2 cut(s) 211, 703
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 262, 595
PleI GAGTC 3 cut(s) 228, 286, 797
PpsI GAGTC 3 cut(s) 228, 286, 797
PscI ACATGT 2 cut(s) 211, 703
Psp6I CCWGG 3 cut(s) 57, 295, 588
PspGI CCWGG 3 cut(s) 57, 295, 588
PspPI GGNCC 1 cut(s) 563
RsaI GTAC 4 cut(s) 210, 578, 634, 712
RsaNI GTAC 4 cut(s) 209, 577, 633, 711
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 3 cut(s) 545, 795, 825
SatI GCNGC 2 cut(s) 261, 594
Sau3AI GATC 2 cut(s) 133, 193
Sau96I GGNCC 1 cut(s) 563
SchI GAGTC 3 cut(s) 229, 286, 798
ScrFI CCNGG 3 cut(s) 59, 297, 590
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 2 cut(s) 71, 247
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 34, 811
SmoI CTYRAG 2 cut(s) 34, 811
Sse9I AATT 2 cut(s) 110, 329
SsiI CCGC 5 cut(s) 277, 473, 594, 714, 728
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 57, 295, 588
StyI CCWWGG 2 cut(s) 301, 518
TaaI ACNGT 4 cut(s) 92, 144, 457, 581
TaiI ACGT 1 cut(s) 388
TaqI TCGA 4 cut(s) 65, 382, 463, 491
TaqII GACCGA 1 cut(s) 580
TasI AATT 2 cut(s) 110, 329
TatI WGTACW 1 cut(s) 576
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 545, 795, 825
Tru9I TTAA 3 cut(s) 545, 795, 825
TscAI CASTG 2 cut(s) 346, 460
TseFI GTSAC 2 cut(s) 99, 350
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 99, 350
TspDTI ATGAA 3 cut(s) 217, 245, 551
TspRI CASTG 2 cut(s) 346, 460
VpaK11BI GGWCC 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 321
XceI RCATGY 2 cut(s) 215, 707
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.