Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 53 - 295 | 2.8e-78 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 21 |
| AccI | GTMKAC | 3 cut(s) | 306, 502, 824 |
| AclWI | GGATC | 3 cut(s) | 479, 748, 761 |
| AcoI | YGGCCR | 1 cut(s) | 783 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AfaI | GTAC | 3 cut(s) | 58, 346, 544 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1123 |
| AflII | CTTAAG | 1 cut(s) | 758 |
| AgsI | TTSAA | 5 cut(s) | 575, 633, 695, 841, 943 |
| AhlI | ACTAGT | 1 cut(s) | 635 |
| AjiI | CACGTC | 1 cut(s) | 789 |
| AjnI | CCWGG | 2 cut(s) | 463, 768 |
| AluBI | AGCT | 6 cut(s) | 125, 139, 278, 559, 643, 1000 |
| AluI | AGCT | 6 cut(s) | 125, 139, 278, 559, 643, 1000 |
| Alw26I | GTCTC | 3 cut(s) | 311, 795, 963 |
| AlwI | GGATC | 3 cut(s) | 479, 748, 761 |
| AoxI | GGCC | 2 cut(s) | 386, 783 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| AseI | ATTAAT | 1 cut(s) | 702 |
| AspLEI | GCGC | 1 cut(s) | 1104 |
| AsuHPI | GGTGA | 2 cut(s) | 440, 695 |
| BalI | TGGCCA | 1 cut(s) | 785 |
| BamHI | GGATCC | 1 cut(s) | 753 |
| BauI | CACGAG | 1 cut(s) | 279 |
| BccI | CCATC | 3 cut(s) | 207, 236, 775 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 521, 555, 904, 938 |
| BciT130I | CCWGG | 2 cut(s) | 465, 770 |
| BcoDI | GTCTC | 3 cut(s) | 311, 795, 963 |
| BcuI | ACTAGT | 1 cut(s) | 635 |
| BfaI | CTAG | 1 cut(s) | 636 |
| BfrI | CTTAAG | 1 cut(s) | 758 |
| BmcAI | AGTACT | 1 cut(s) | 58 |
| Bme1390I | CCNGG | 2 cut(s) | 465, 770 |
| BmgBI | CACGTC | 1 cut(s) | 789 |
| BmiI | GGNNCC | 1 cut(s) | 755 |
| BmrFI | CCNGG | 2 cut(s) | 465, 770 |
| BmsI | GCATC | 2 cut(s) | 835, 1113 |
| BsaBI | GATNNNNATC | 1 cut(s) | 69 |
| BsaI | GGTCTC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 2 cut(s) | 769, 1077 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 310, 340, 862, 892 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1123 |
| Bse1I | ACTGG | 1 cut(s) | 951 |
| Bse3DI | GCAATG | 1 cut(s) | 604 |
| Bse8I | GATNNNNATC | 1 cut(s) | 69 |
| BseBI | CCWGG | 2 cut(s) | 465, 770 |
| BseDI | CCNNGG | 2 cut(s) | 769, 1077 |
| BseGI | GGATG | 2 cut(s) | 409, 1104 |
| BseJI | GATNNNNATC | 1 cut(s) | 69 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1123 |
| BseMI | GCAATG | 1 cut(s) | 604 |
| BseNI | ACTGG | 1 cut(s) | 951 |
| BseRI | GAGGAG | 2 cut(s) | 455, 528 |
| BshFI | GGCC | 2 cut(s) | 388, 785 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1123 |
| BsmAI | GTCTC | 3 cut(s) | 311, 795, 963 |
| BsmBI | CGTCTC | 1 cut(s) | 795 |
| BsnI | GGCC | 2 cut(s) | 388, 785 |
| Bso31I | GGTCTC | 1 cut(s) | 311 |
| Bsp143I | GATC | 4 cut(s) | 430, 484, 753, 832 |
| Bsp19I | CCATGG | 1 cut(s) | 1077 |
| BspANI | GGCC | 2 cut(s) | 388, 785 |
| BspHI | TCATGA | 3 cut(s) | 73, 106, 481 |
| BspLI | GGNNCC | 1 cut(s) | 755 |
| BspPI | GGATC | 3 cut(s) | 479, 748, 761 |
| BspTI | CTTAAG | 1 cut(s) | 758 |
| BspTNI | GGTCTC | 1 cut(s) | 311 |
| BsrDI | GCAATG | 1 cut(s) | 604 |
| BsrI | ACTGG | 1 cut(s) | 951 |
| BssECI | CCNNGG | 2 cut(s) | 769, 1077 |
| BssMI | GATC | 4 cut(s) | 430, 484, 753, 832 |
| BssNAI | GTATAC | 1 cut(s) | 825 |
| BssSI | CACGAG | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 1 cut(s) | 1077 |
| Bst1107I | GTATAC | 1 cut(s) | 825 |
| Bst2BI | CACGAG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 2 cut(s) | 465, 770 |
| Bst4CI | ACNGT | 1 cut(s) | 349 |
| Bst6I | CTCTTC | 4 cut(s) | 37, 432, 690, 726 |
| BstAFI | CTTAAG | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 4 cut(s) | 123, 866, 913, 1068 |
| BstDEI | CTNAG | 1 cut(s) | 560 |
| BstDSI | CCRYGG | 1 cut(s) | 1077 |
| BstF5I | GGATG | 2 cut(s) | 409, 1104 |
| BstHHI | GCGC | 1 cut(s) | 1104 |
| BstKTI | GATC | 4 cut(s) | 433, 487, 756, 835 |
| BstMAI | GTCTC | 3 cut(s) | 311, 795, 963 |
| BstMBI | GATC | 4 cut(s) | 430, 484, 753, 832 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 44, 332, 649 |
| BstNI | CCWGG | 2 cut(s) | 465, 770 |
| BstNSI | RCATGY | 1 cut(s) | 1070 |
| BstSCI | CCNGG | 2 cut(s) | 463, 768 |
| BstX2I | RGATCY | 1 cut(s) | 753 |
| BstYI | RGATCY | 1 cut(s) | 753 |
| BstZ17I | GTATAC | 1 cut(s) | 825 |
| BsuRI | GGCC | 2 cut(s) | 388, 785 |
| BtgI | CCRYGG | 1 cut(s) | 1077 |
| BtrI | CACGTC | 1 cut(s) | 789 |
| BtsCI | GGATG | 2 cut(s) | 409, 1104 |
| BtsIMutI | CAGTG | 1 cut(s) | 958 |
| Cac8I | GCNNGC | 4 cut(s) | 123, 866, 913, 1068 |
| CciI | TCATGA | 3 cut(s) | 73, 106, 481 |
| CfoI | GCGC | 1 cut(s) | 1104 |
| Csp6I | GTAC | 3 cut(s) | 57, 345, 543 |
| CviQI | GTAC | 3 cut(s) | 57, 345, 543 |
| DdeI | CTNAG | 1 cut(s) | 560 |
| DpnI | GATC | 4 cut(s) | 432, 486, 755, 834 |
| DpnII | GATC | 4 cut(s) | 430, 484, 753, 832 |
| EaeI | YGGCCR | 1 cut(s) | 783 |
| Eam1104I | CTCTTC | 4 cut(s) | 37, 432, 690, 726 |
| EarI | CTCTTC | 4 cut(s) | 37, 432, 690, 726 |
| Eco130I | CCWWGG | 1 cut(s) | 1077 |
| Eco31I | GGTCTC | 1 cut(s) | 311 |
| Eco32I | GATATC | 1 cut(s) | 901 |
| EcoRII | CCWGG | 2 cut(s) | 463, 768 |
| EcoRV | GATATC | 1 cut(s) | 901 |
| EcoT14I | CCWWGG | 1 cut(s) | 1077 |
| EcoT22I | ATGCAT | 1 cut(s) | 1068 |
| ErhI | CCWWGG | 1 cut(s) | 1077 |
| Esp3I | CGTCTC | 1 cut(s) | 795 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 305, 337 |
| FblI | GTMKAC | 3 cut(s) | 306, 502, 824 |
| FokI | GGATG | 2 cut(s) | 416, 1091 |
| FspBI | CTAG | 1 cut(s) | 636 |
| GlaI | GCGC | 1 cut(s) | 1103 |
| HaeIII | GGCC | 2 cut(s) | 388, 785 |
| HhaI | GCGC | 1 cut(s) | 1104 |
| Hin6I | GCGC | 1 cut(s) | 1102 |
| HinP1I | GCGC | 1 cut(s) | 1102 |
| HindIII | AAGCTT | 2 cut(s) | 641, 998 |
| HinfI | GANTC | 5 cut(s) | 454, 605, 956, 1054, 1141 |
| HphI | GGTGA | 2 cut(s) | 440, 695 |
| Hpy166II | GTNNAC | 6 cut(s) | 220, 288, 307, 376, 503, 825 |
| Hpy188I | TCNGA | 2 cut(s) | 241, 624 |
| Hpy188III | TCNNGA | 8 cut(s) | 62, 74, 107, 434, 482, 488, 830, 1145 |
| Hpy8I | GTNNAC | 6 cut(s) | 220, 288, 307, 376, 503, 825 |
| HpyAV | CCTTC | 2 cut(s) | 190, 1118 |
| HpyCH4III | ACNGT | 1 cut(s) | 349 |
| HpyCH4IV | ACGT | 1 cut(s) | 788 |
| HpyCH4V | TGCA | 3 cut(s) | 848, 1040, 1066 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 44, 332, 649 |
| HpyF3I | CTNAG | 1 cut(s) | 560 |
| HpySE526I | ACGT | 1 cut(s) | 788 |
| HspAI | GCGC | 1 cut(s) | 1102 |
| Kzo9I | GATC | 4 cut(s) | 430, 484, 753, 832 |
| LmnI | GCTCC | 3 cut(s) | 331, 594, 1075 |
| LweI | GCATC | 2 cut(s) | 835, 1113 |
| MaeI | CTAG | 1 cut(s) | 636 |
| MaeII | ACGT | 1 cut(s) | 788 |
| MaeIII | GTNAC | 1 cut(s) | 676 |
| MalI | GATC | 4 cut(s) | 432, 486, 755, 834 |
| MboI | GATC | 4 cut(s) | 430, 484, 753, 832 |
| MboII | GAAGA | 8 cut(s) | 24, 205, 449, 449, 587, 707, 713, 1079 |
| MflI | RGATCY | 1 cut(s) | 753 |
| MlsI | TGGCCA | 1 cut(s) | 785 |
| MluCI | AATT | 2 cut(s) | 230, 516 |
| MluNI | TGGCCA | 1 cut(s) | 785 |
| MlyI | GAGTC | 2 cut(s) | 965, 1063 |
| Mox20I | TGGCCA | 1 cut(s) | 785 |
| Mph1103I | ATGCAT | 1 cut(s) | 1068 |
| MscI | TGGCCA | 1 cut(s) | 785 |
| MseI | TTAA | 6 cut(s) | 150, 176, 527, 702, 741, 759 |
| MslI | CAYNNNNRTG | 1 cut(s) | 240 |
| Msp20I | TGGCCA | 1 cut(s) | 785 |
| MspCI | CTTAAG | 1 cut(s) | 758 |
| MspR9I | CCNGG | 2 cut(s) | 465, 770 |
| MvaI | CCWGG | 2 cut(s) | 465, 770 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 44, 332, 649 |
| NcoI | CCATGG | 1 cut(s) | 1077 |
| NdeII | GATC | 4 cut(s) | 430, 484, 753, 832 |
| NlaIV | GGNNCC | 1 cut(s) | 755 |
| NmeAIII | GCCGAG | 1 cut(s) | 580 |
| NmuCI | GTSAC | 1 cut(s) | 676 |
| NsiI | ATGCAT | 1 cut(s) | 1068 |
| NspI | RCATGY | 1 cut(s) | 1070 |
| PaeI | GCATGC | 1 cut(s) | 1070 |
| PagI | TCATGA | 3 cut(s) | 73, 106, 481 |
| PfeI | GAWTC | 3 cut(s) | 454, 605, 1141 |
| PleI | GAGTC | 2 cut(s) | 964, 1062 |
| PpsI | GAGTC | 2 cut(s) | 964, 1062 |
| PshBI | ATTAAT | 1 cut(s) | 702 |
| PsiI | TTATAA | 1 cut(s) | 21 |
| Psp6I | CCWGG | 2 cut(s) | 463, 768 |
| PspGI | CCWGG | 2 cut(s) | 463, 768 |
| PspN4I | GGNNCC | 1 cut(s) | 755 |
| PsuI | RGATCY | 1 cut(s) | 753 |
| RsaI | GTAC | 3 cut(s) | 58, 346, 544 |
| RsaNI | GTAC | 3 cut(s) | 57, 345, 543 |
| RseI | CAYNNNNRTG | 1 cut(s) | 240 |
| SaqAI | TTAA | 6 cut(s) | 150, 176, 527, 702, 741, 759 |
| Sau3AI | GATC | 4 cut(s) | 430, 484, 753, 832 |
| ScaI | AGTACT | 1 cut(s) | 58 |
| SchI | GAGTC | 2 cut(s) | 965, 1063 |
| ScrFI | CCNGG | 2 cut(s) | 465, 770 |
| SfaNI | GCATC | 2 cut(s) | 835, 1113 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 240 |
| SmlI | CTYRAG | 1 cut(s) | 758 |
| SmoI | CTYRAG | 1 cut(s) | 758 |
| SpeI | ACTAGT | 1 cut(s) | 635 |
| SphI | GCATGC | 1 cut(s) | 1070 |
| Sse9I | AATT | 2 cut(s) | 230, 516 |
| SspMI | CTAG | 1 cut(s) | 636 |
| StyD4I | CCNGG | 2 cut(s) | 463, 768 |
| StyI | CCWWGG | 1 cut(s) | 1077 |
| TaaI | ACNGT | 1 cut(s) | 349 |
| TaiI | ACGT | 1 cut(s) | 791 |
| TaqI | TCGA | 3 cut(s) | 435, 924, 1021 |
| TasI | AATT | 2 cut(s) | 230, 516 |
| TatI | WGTACW | 1 cut(s) | 56 |
| TfiI | GAWTC | 3 cut(s) | 454, 605, 1141 |
| Tru1I | TTAA | 6 cut(s) | 150, 176, 527, 702, 741, 759 |
| Tru9I | TTAA | 6 cut(s) | 150, 176, 527, 702, 741, 759 |
| TscAI | CASTG | 1 cut(s) | 958 |
| TseFI | GTSAC | 1 cut(s) | 676 |
| Tsp45I | GTSAC | 1 cut(s) | 676 |
| TspDTI | ATGAA | 9 cut(s) | 90, 131, 168, 224, 467, 497, 713, 1051, 1079 |
| TspRI | CASTG | 1 cut(s) | 958 |
| Vha464I | CTTAAG | 1 cut(s) | 758 |
| VspI | ATTAAT | 1 cut(s) | 702 |
| XapI | RAATTY | 1 cut(s) | 230 |
| XceI | RCATGY | 1 cut(s) | 1070 |
| XmiI | GTMKAC | 3 cut(s) | 306, 502, 824 |
| XspI | CTAG | 1 cut(s) | 636 |
| ZrmI | AGTACT | 1 cut(s) | 58 |
| Zsp2I | ATGCAT | 1 cut(s) | 1068 |