Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 73 | 9.4e-15 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 253 |
| AccB1I | GGYRCC | 1 cut(s) | 253 |
| AfaI | GTAC | 2 cut(s) | 95, 255 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 1 cut(s) | 435 |
| AjnI | CCWGG | 1 cut(s) | 116 |
| AluBI | AGCT | 4 cut(s) | 52, 236, 269, 423 |
| AluI | AGCT | 4 cut(s) | 52, 236, 269, 423 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 2 cut(s) | 40, 170 |
| AoxI | GGCC | 1 cut(s) | 404 |
| Asp718I | GGTACC | 1 cut(s) | 253 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| AsuNHI | GCTAGC | 1 cut(s) | 52 |
| BanI | GGYRCC | 1 cut(s) | 253 |
| BanII | GRGCYC | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BbvCI | CCTCAGC | 1 cut(s) | 401 |
| BccI | CCATC | 1 cut(s) | 25 |
| BciT130I | CCWGG | 1 cut(s) | 118 |
| BciVI | GTATCC | 1 cut(s) | 252 |
| BcoDI | GTCTC | 2 cut(s) | 40, 170 |
| BfaI | CTAG | 4 cut(s) | 53, 315, 395, 445 |
| BfmI | CTRYAG | 1 cut(s) | 41 |
| BfoI | RGCGCY | 1 cut(s) | 295 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 252 |
| BmcAI | AGTACT | 1 cut(s) | 95 |
| Bme1390I | CCNGG | 1 cut(s) | 118 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 1 cut(s) | 118 |
| BmtI | GCTAGC | 1 cut(s) | 56 |
| Bpu10I | CCTNAGC | 1 cut(s) | 401 |
| BsaJI | CCNNGG | 1 cut(s) | 117 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse3DI | GCAATG | 1 cut(s) | 22 |
| BseBI | CCWGG | 1 cut(s) | 118 |
| BseDI | CCNNGG | 1 cut(s) | 117 |
| BseMI | GCAATG | 1 cut(s) | 22 |
| BseMII | CTCAG | 3 cut(s) | 51, 228, 392 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BshFI | GGCC | 1 cut(s) | 406 |
| BshNI | GGYRCC | 1 cut(s) | 253 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsmAI | GTCTC | 2 cut(s) | 40, 170 |
| BsnI | GGCC | 1 cut(s) | 406 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| Bsp143I | GATC | 3 cut(s) | 247, 262, 391 |
| BspANI | GGCC | 1 cut(s) | 406 |
| BspCNI | CTCAG | 3 cut(s) | 52, 229, 393 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspMAI | CTGCAG | 1 cut(s) | 45 |
| BspOI | GCTAGC | 1 cut(s) | 56 |
| BspT107I | GGYRCC | 1 cut(s) | 253 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 22 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 117 |
| BssMI | GATC | 3 cut(s) | 247, 262, 391 |
| Bst2UI | CCWGG | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 1 cut(s) | 358 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 271 |
| BstDEI | CTNAG | 4 cut(s) | 60, 100, 237, 401 |
| BstH2I | RGCGCY | 1 cut(s) | 295 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 3 cut(s) | 250, 265, 394 |
| BstMAI | GTCTC | 2 cut(s) | 40, 170 |
| BstMBI | GATC | 3 cut(s) | 247, 262, 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 49 |
| BstNI | CCWGG | 1 cut(s) | 118 |
| BstSCI | CCNGG | 1 cut(s) | 116 |
| BstSFI | CTRYAG | 1 cut(s) | 41 |
| BsuI | GTATCC | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 406 |
| BtsI | GCAGTG | 1 cut(s) | 342 |
| BtsIMutI | CAGTG | 1 cut(s) | 342 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 271 |
| CfoI | GCGC | 1 cut(s) | 294 |
| Csp6I | GTAC | 2 cut(s) | 94, 254 |
| CviAII | CATG | 1 cut(s) | 359 |
| CviJI | RGCY | 9 cut(s) | 52, 56, 116, 236, 269, 308, 406, 423, 444 |
| CviKI_1 | RGCY | 9 cut(s) | 52, 56, 116, 236, 269, 308, 406, 423, 444 |
| CviQI | GTAC | 2 cut(s) | 94, 254 |
| DdeI | CTNAG | 4 cut(s) | 60, 100, 237, 401 |
| DpnI | GATC | 3 cut(s) | 249, 264, 393 |
| DpnII | GATC | 3 cut(s) | 247, 262, 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 358 |
| EarI | CTCTTC | 1 cut(s) | 358 |
| Ecl136II | GAGCTC | 1 cut(s) | 269 |
| Eco24I | GRGCYC | 1 cut(s) | 271 |
| Eco53kI | GAGCTC | 1 cut(s) | 269 |
| EcoICRI | GAGCTC | 1 cut(s) | 269 |
| EcoRII | CCWGG | 1 cut(s) | 116 |
| EcoT38I | GRGCYC | 1 cut(s) | 271 |
| FaeI | CATG | 1 cut(s) | 362 |
| FaiI | YATR | 6 cut(s) | 156, 312, 331, 333, 360, 413 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 83, 115 |
| FatI | CATG | 1 cut(s) | 358 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FriOI | GRGCYC | 1 cut(s) | 271 |
| FspBI | CTAG | 4 cut(s) | 53, 315, 395, 445 |
| GlaI | GCGC | 1 cut(s) | 293 |
| HaeII | RGCGCY | 1 cut(s) | 295 |
| HaeIII | GGCC | 1 cut(s) | 406 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1II | CATG | 1 cut(s) | 362 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HinfI | GANTC | 2 cut(s) | 132, 223 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 1 cut(s) | 86 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 279 |
| Hpy188III | TCNNGA | 3 cut(s) | 67, 161, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 86 |
| HpyAV | CCTTC | 2 cut(s) | 67, 122 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4V | TGCA | 4 cut(s) | 43, 195, 329, 335 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 49 |
| HpyF3I | CTNAG | 4 cut(s) | 60, 100, 237, 401 |
| Hsp92II | CATG | 1 cut(s) | 362 |
| HspAI | GCGC | 1 cut(s) | 292 |
| KpnI | GGTACC | 1 cut(s) | 257 |
| Kzo9I | GATC | 3 cut(s) | 247, 262, 391 |
| LpnPI | CCDG | 8 cut(s) | 103, 130, 158, 165, 236, 258, 333, 426 |
| MaeI | CTAG | 4 cut(s) | 53, 315, 395, 445 |
| MaeIII | GTNAC | 1 cut(s) | 354 |
| MalI | GATC | 3 cut(s) | 249, 264, 393 |
| MboI | GATC | 3 cut(s) | 247, 262, 391 |
| MboII | GAAGA | 1 cut(s) | 375 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MluCI | AATT | 5 cut(s) | 6, 105, 348, 429, 435 |
| MmeI | TCCRAC | 1 cut(s) | 168 |
| MnlI | CCTC | 6 cut(s) | 67, 103, 141, 273, 396, 409 |
| MseI | TTAA | 2 cut(s) | 90, 428 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 1 cut(s) | 118 |
| MvaI | CCWGG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 49 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 3 cut(s) | 247, 262, 391 |
| NheI | GCTAGC | 1 cut(s) | 52 |
| NlaIII | CATG | 1 cut(s) | 362 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NmeAIII | GCCGAG | 1 cut(s) | 432 |
| PfeI | GAWTC | 2 cut(s) | 132, 223 |
| Psp124BI | GAGCTC | 1 cut(s) | 271 |
| Psp6I | CCWGG | 1 cut(s) | 116 |
| PspGI | CCWGG | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PstI | CTGCAG | 1 cut(s) | 45 |
| RsaI | GTAC | 2 cut(s) | 95, 255 |
| RsaNI | GTAC | 2 cut(s) | 94, 254 |
| SacI | GAGCTC | 1 cut(s) | 271 |
| SaqAI | TTAA | 2 cut(s) | 90, 428 |
| Sau3AI | GATC | 3 cut(s) | 247, 262, 391 |
| ScaI | AGTACT | 1 cut(s) | 95 |
| ScrFI | CCNGG | 1 cut(s) | 118 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SetI | ASST | 9 cut(s) | 54, 114, 184, 238, 255, 259, 271, 284, 425 |
| SfcI | CTRYAG | 1 cut(s) | 41 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 5 cut(s) | 6, 105, 348, 429, 435 |
| SspMI | CTAG | 4 cut(s) | 53, 315, 395, 445 |
| SstI | GAGCTC | 1 cut(s) | 271 |
| StyD4I | CCNGG | 1 cut(s) | 116 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaqI | TCGA | 2 cut(s) | 66, 265 |
| TasI | AATT | 5 cut(s) | 6, 105, 348, 429, 435 |
| TatI | WGTACW | 1 cut(s) | 93 |
| TfiI | GAWTC | 2 cut(s) | 132, 223 |
| Tru1I | TTAA | 2 cut(s) | 90, 428 |
| Tru9I | TTAA | 2 cut(s) | 90, 428 |
| TscAI | CASTG | 1 cut(s) | 342 |
| TspDTI | ATGAA | 1 cut(s) | 86 |
| TspRI | CASTG | 1 cut(s) | 342 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XspI | CTAG | 4 cut(s) | 53, 315, 395, 445 |
| ZrmI | AGTACT | 1 cut(s) | 95 |