MD06G1064200.v1.1

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000071
Physical Location & Seq
Reverse (-)
13164049 .. 13166992
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1064200.v1.1.491

Sequence Viewer

Length: 2061 bp
ATGGCTCAATATAATCATAGTGTTGTTATGCATCTTGGTGGAACAAATAAAAGGATAATAGATACTGGGGCCACTGATCATGTGACTAGTGACCCTAGAGTGTTTGATGAGTTATGTGACTATGTTCATGATCCGTATGTTGCTAGTGCAAATGGAGCACATTCCCCTGTAAAGGGTGAAGACACTATCTTTCTGACTCCAACCTTATCTTTGGTCCGTGCTTTACTTGTTCCTGATCTTAAGTGCAATCTTTTATCGGTAGGAAAACTTCTTGATACCTCATATTGTTCTGCTCACTTCTACCCTGCGTATTGTTATTTTCAAGATATTCAAACTCAGAAGATAATTGGTCATGGTAAAAGAATAGGGAGTTTGTACATCTTGACTATGGAGGATACTGTTGTTTCTAGTTCAAATAATCATCAAGTTTTAAGTGCTAAAGTGGATGACAGACATCAAATTTGGTTGTGGCATCGACGATTGGGACATCCATCATTCAGTTATATAAAACATCTATTTCCTTCTTTATTTCGCACTTGTAGTGATTCAGAGTTCAAGTGTGAAACATGTGTCATGGCTAAGAGTCATCGTGCTTCATTTCCTATAAGTCATTCTAAAGCTACTTTGCCATTTGATTTGATACATTCTGATGTGTGGGGTCCAGTGAAAGTTACTTCTAATGGATTCCGTTGGTTTGTTACTTTTATTGATGATTGTACTCGGTTAACTTGGGTGTTCTTGATGAAGAATAAAAGTGATGTTCCGTTACTTCTTCAAAAATTTTGTACAATGCTGTCTACTCAGTTTCAGACCAAAGTTAATGTCTTCAGGTCTGATAACGGGGGAGAATATGTGAATCACTCTTTGGCATGTTTTTTTCGTGATCATGGTATTATTCCCCAGACGACTACTCTGTTTACACCCCAACAAAACGGTGTGTCCCAACGGAATAATCGTCAAATAATGGAAGCTGCTCGCTCCTTGATGTTGGATAAATGTGGGGAGAGGGGAAGTGAAGAGCAGATTCGAAGAGATGGTATGGATAATGTGTTACAGGCAGAGTTGGGAACAGAACCTATTATGTTGCGTGATACTGATCAGTCAACTACATATAGTGATCGGTCACCTATTATTCCCGGAACTATTTCTACTGACGATAGATCAGATATGCCCAGCGAGTTGCCTATTAGTATGTCTGACGAATTACCTTCTAATGATCGGTTGCCTGCTGCTGATATGTCTAACGAGTTGCCTAATGATGGTTCGTCCAGTGATGATTCTTCTAACAGTTTGGTACAAGATGATGGCATACATGAGGAAGTGTATGTGGATCTCCCACCTGGTATTGGAACATCTCCTGGAAAAGGTGTTGTATGCAGGTTACGAAAGGTCTTGTATGGTTTGAAACAATCTCCTAGAGCGTGGTTTAGGAGGTTTACAAGTTCAATGAAGAAGTTTAGGTATATCCAGAGTCATTCAGATCCTACTTTGTTTCTAAATCGACAAAACGGTAAGCTAACTGCATTGATTATTTATGTTGATGACATGATAGTGACTGGTGATGATCAGAAAGAGATACAACGCCTTCAAAAGTACCTAGCTACTGAGTTTGAGATGAAAGAATTGGGTGAATTGAAGTATTTTCTTGGAATCGAGGTTGCACGATCCAAGCATGGTATTTTTTTGTCTCAACGGAAATATGTTCTTGATTTGTTAGCTGAAACAGGTATGTTAGATTGCAAGCCTGTTGATACTCCGATTGAGCAGAATCATCGTTTGGGCTTATTTCCAGATCAAGTTCCTACTCATAAGGAACAGTATCAGAGGCTTGTTGGGAGATTAATTTATTTATCTCACACTCGCCTTGACATTGCTTATGCAGTTAGTGTGGTAAGTCAGTTTATGCACTCACCTGGTGAAGCTCATATGGATGCAGTAACCCGTATTTTGAGGTACTTGAAGATGGCTCCTGGCAGAGGCCTATTTTTCTCCAAGAATTGTCATTTGAATGTCGAAGGATATACAGATGCAGATTGGGCAGGTTCTATCACCAATCGGTGA

Protein Analysis

687

Amino Acids

77.65

Weight (kDa)

6.51

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 19 - 93 7.6e-10 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 125 - 195 4.2e-16 GAG-pre-integrase domain
rve PF00665 209 - 303 4.2e-11 Integrase core domain
RVT_2 PF07727 436 - 588 4.7e-34 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1368, 2030
AccI GTMKAC 1 cut(s) 797
AclWI GGATC 4 cut(s) 125, 1338, 1475, 1659
AcsI RAATTY 2 cut(s) 459, 779
AcuI CTGAAG 1 cut(s) 811
AdeI CACNNNGTG 1 cut(s) 1916
AfaI GTAC 6 cut(s) 377, 718, 787, 1296, 1595, 1955
AfiI CCNNNNNNNGG 6 cut(s) 172, 173, 1259, 1346, 1364, 1976
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 566
AhlI ACTAGT 1 cut(s) 86
AjnI CCWGG 4 cut(s) 1339, 1357, 1912, 1969
AjuI GAANNNNNNNTTGG 4 cut(s) 848, 880, 1760, 1792
AluBI AGCT 6 cut(s) 620, 971, 1516, 1601, 1718, 1922
AluI AGCT 6 cut(s) 620, 971, 1516, 1601, 1718, 1922
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 1692
AlwI GGATC 4 cut(s) 125, 1338, 1475, 1659
AoxI GGCC 2 cut(s) 69, 1978
ApeKI GCWGC 2 cut(s) 971, 1229
ApoI RAATTY 2 cut(s) 459, 779
ArsI GACNNNNNNTTYG 4 cut(s) 444, 476, 807, 839
AseI ATTAAT 1 cut(s) 1841
Asp700I GAANNNNTTC 1 cut(s) 1144
AspS9I GGNCC 3 cut(s) 69, 214, 659
AsuC2I CCSGG 1 cut(s) 1137
AsuHPI GGTGA 7 cut(s) 188, 1116, 1571, 1640, 1902, 1928, 2041
AsuII TTCGAA 1 cut(s) 1027
AvaII GGWCC 2 cut(s) 214, 659
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbsI GAAGAC 2 cut(s) 186, 817
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 958, 1216
BccI CCATC 5 cut(s) 499, 1028, 1253, 1298, 1957
BcgI CGANNNNNNTGC 2 cut(s) 1754, 1788
BciT130I CCWGG 4 cut(s) 1341, 1359, 1914, 1971
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 4 cut(s) 76, 883, 1096, 1564
BcnI CCSGG 1 cut(s) 1137
BcoDI GTCTC 1 cut(s) 1692
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 6 cut(s) 87, 96, 144, 408, 1416, 1598
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 2 cut(s) 1368, 2030
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 2 cut(s) 972, 1230
BlsI GCNGC 2 cut(s) 973, 1231
Bme1390I CCNGG 5 cut(s) 1137, 1341, 1359, 1914, 1971
Bme18I GGWCC 2 cut(s) 214, 659
BmgT120I GGNCC 3 cut(s) 69, 214, 659
BmiI GGNNCC 3 cut(s) 70, 660, 1968
BmrFI CCNGG 5 cut(s) 1137, 1341, 1359, 1914, 1971
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 4 cut(s) 40, 481, 1921, 2017
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 2 cut(s) 186, 817
Bpu14I TTCGAA 1 cut(s) 1027
BpuMI CCSGG 1 cut(s) 1137
BsaBI GATNNNNATC 1 cut(s) 1095
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 173, 1259, 1346, 1364, 1976
Bse1I ACTGG 4 cut(s) 70, 662, 1269, 1561
Bse3DI GCAATG 1 cut(s) 1869
Bse8I GATNNNNATC 1 cut(s) 1095
BseBI CCWGG 4 cut(s) 1341, 1359, 1914, 1971
BseGI GGATG 3 cut(s) 451, 487, 1936
BseJI GATNNNNATC 1 cut(s) 1095
BseLI CCNNNNNNNGG 6 cut(s) 172, 173, 1259, 1346, 1364, 1976
BseMI GCAATG 1 cut(s) 1869
BseMII CTCAG 3 cut(s) 350, 815, 1596
BseNI ACTGG 4 cut(s) 70, 662, 1269, 1561
BseXI GCAGC 2 cut(s) 958, 1216
BseYI CCCAGC 1 cut(s) 1172
BshFI GGCC 2 cut(s) 71, 1980
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 1137
BslFI GGGAC 2 cut(s) 498, 925
BslI CCNNNNNNNGG 6 cut(s) 172, 173, 1259, 1346, 1364, 1976
BsmAI GTCTC 1 cut(s) 1692
BsmFI GGGAC 2 cut(s) 498, 925
BsnI GGCC 2 cut(s) 71, 1980
Bsp119I TTCGAA 1 cut(s) 1027
Bsp1286I GDGCHC 1 cut(s) 160
Bsp1407I TGTACA 2 cut(s) 375, 785
BspANI GGCC 2 cut(s) 71, 1980
BspCNI CTCAG 3 cut(s) 349, 814, 1597
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 70, 660, 1968
BspMI ACCTGC 2 cut(s) 1368, 2030
BspPI GGATC 4 cut(s) 125, 1338, 1475, 1659
BspQI GCTCTTC 1 cut(s) 1011
BspT104I TTCGAA 1 cut(s) 1027
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 1869
BsrGI TGTACA 2 cut(s) 375, 785
BsrI ACTGG 4 cut(s) 70, 662, 1269, 1561
Bst2UI CCWGG 4 cut(s) 1341, 1359, 1914, 1971
Bst4CI ACNGT 5 cut(s) 400, 935, 1289, 1511, 1818
Bst6I CTCTTC 2 cut(s) 1011, 1024
BstAFI CTTAAG 1 cut(s) 239
BstAUI TGTACA 2 cut(s) 375, 785
BstBI TTCGAA 1 cut(s) 1027
BstC8I GCNNGC 3 cut(s) 976, 1227, 1742
BstDEI CTNAG 4 cut(s) 336, 579, 801, 1605
BstEII GGTNACC 1 cut(s) 1122
BstENI CCTNNNNNAGG 2 cut(s) 1362, 1974
BstF5I GGATG 3 cut(s) 451, 487, 1936
BstMAI GTCTC 1 cut(s) 1692
BstMWI GCNNNNNNNGC 2 cut(s) 155, 2036
BstNI CCWGG 4 cut(s) 1341, 1359, 1914, 1971
BstNSI RCATGY 2 cut(s) 570, 873
BstPI GGTNACC 1 cut(s) 1122
BstSCI CCNGG 5 cut(s) 1135, 1339, 1357, 1912, 1969
BstV1I GCAGC 2 cut(s) 958, 1216
BstV2I GAAGAC 2 cut(s) 186, 817
BstX2I RGATCY 2 cut(s) 1330, 1480
BstYI RGATCY 2 cut(s) 1330, 1480
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 71, 1980
BtsCI GGATG 3 cut(s) 451, 487, 1936
BtsIMutI CAGTG 3 cut(s) 72, 669, 1276
BveI ACCTGC 2 cut(s) 1368, 2030
Cac8I GCNNGC 3 cut(s) 976, 1227, 1742
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 69, 214, 659
CsiI ACCWGGT 2 cut(s) 1339, 1912
Csp6I GTAC 6 cut(s) 376, 717, 786, 1295, 1594, 1954
CviQI GTAC 6 cut(s) 376, 717, 786, 1295, 1594, 1954
DdeI CTNAG 4 cut(s) 336, 579, 801, 1605
DraIII CACNNNGTG 1 cut(s) 1916
Eam1104I CTCTTC 2 cut(s) 1011, 1024
EarI CTCTTC 2 cut(s) 1011, 1024
Eco147I AGGCCT 1 cut(s) 1980
Eco47I GGWCC 2 cut(s) 214, 659
Eco57I CTGAAG 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 1122
EcoNI CCTNNNNNAGG 2 cut(s) 1362, 1974
EcoO65I GGTNACC 1 cut(s) 1122
EcoRII CCWGG 4 cut(s) 1339, 1357, 1912, 1969
EcoT22I ATGCAT 1 cut(s) 33
FaqI GGGAC 2 cut(s) 498, 925
FauNDI CATATG 1 cut(s) 1926
FbaI TGATCA 4 cut(s) 76, 883, 1096, 1564
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 2 cut(s) 972, 1230
FokI GGATG 3 cut(s) 458, 474, 1943
Fsp4HI GCNGC 2 cut(s) 972, 1230
FspBI CTAG 6 cut(s) 87, 96, 144, 408, 1416, 1598
GluI GCNGC 2 cut(s) 972, 1230
GsaI CCCAGC 1 cut(s) 1176
HaeIII GGCC 2 cut(s) 71, 1980
HapII CCGG 1 cut(s) 1137
HincII GTYRAC 2 cut(s) 726, 1104
HindII GTYRAC 2 cut(s) 726, 1104
HpaI GTTAAC 1 cut(s) 726
HpaII CCGG 1 cut(s) 1137
HphI GGTGA 7 cut(s) 188, 1116, 1571, 1640, 1902, 1928, 2041
Hpy166II GTNNAC 5 cut(s) 726, 798, 918, 1104, 1437
Hpy8I GTNNAC 5 cut(s) 726, 798, 918, 1104, 1437
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 4 cut(s) 531, 1218, 1595, 2009
HpyCH4III ACNGT 5 cut(s) 400, 935, 1289, 1511, 1818
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 2036
HpyF3I CTNAG 4 cut(s) 336, 579, 801, 1605
Ksp22I TGATCA 4 cut(s) 76, 883, 1096, 1564
KspAI GTTAAC 1 cut(s) 726
LguI GCTCTTC 1 cut(s) 1011
LmnI GCTCC 3 cut(s) 155, 983, 1972
Lsp1109I GCAGC 2 cut(s) 958, 1216
LweI GCATC 4 cut(s) 40, 481, 1921, 2017
MabI ACCWGGT 2 cut(s) 1339, 1912
MaeI CTAG 6 cut(s) 87, 96, 144, 408, 1416, 1598
MflI RGATCY 2 cut(s) 1330, 1480
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 8 cut(s) 345, 459, 779, 1202, 1622, 1631, 1842, 1996
MlyI GAGTC 3 cut(s) 190, 592, 1480
MmeI TCCRAC 2 cut(s) 224, 969
MnlI CCTC 9 cut(s) 289, 385, 999, 1309, 1425, 1648, 1818, 1944, 1970
Mph1103I ATGCAT 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 1144
MseI TTAA 5 cut(s) 240, 431, 725, 819, 1841
MslI CAYNNNNRTG 5 cut(s) 36, 648, 1550, 1929, 2007
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 1137
MspR9I CCNGG 5 cut(s) 1137, 1341, 1359, 1914, 1971
MvaI CCWGG 4 cut(s) 1341, 1359, 1914, 1971
MwoI GCNNNNNNNGC 2 cut(s) 155, 2036
NciI CCSGG 1 cut(s) 1137
NdeI CATATG 1 cut(s) 1926
NlaIV GGNNCC 3 cut(s) 70, 660, 1968
NmuCI GTSAC 5 cut(s) 82, 89, 116, 1122, 1552
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 2 cut(s) 570, 873
NspV TTCGAA 1 cut(s) 1027
PagI TCATGA 1 cut(s) 127
PceI AGGCCT 1 cut(s) 1980
PciI ACATGT 1 cut(s) 566
PciSI GCTCTTC 1 cut(s) 1011
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 1144
PfeI GAWTC 7 cut(s) 545, 684, 856, 1024, 1277, 1650, 1768
PfoI TCCNGGA 2 cut(s) 1135, 1357
PkrI GCNGC 2 cut(s) 973, 1231
PleI GAGTC 3 cut(s) 190, 591, 1479
PpsI GAGTC 3 cut(s) 190, 591, 1479
PscI ACATGT 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 1841
Psp6I CCWGG 4 cut(s) 1339, 1357, 1912, 1969
PspEI GGTNACC 1 cut(s) 1122
PspFI CCCAGC 1 cut(s) 1172
PspGI CCWGG 4 cut(s) 1339, 1357, 1912, 1969
PspN4I GGNNCC 3 cut(s) 70, 660, 1968
PspPI GGNCC 3 cut(s) 69, 214, 659
PsrI GAACNNNNNNTAC 2 cut(s) 1132, 1164
PsuI RGATCY 2 cut(s) 1330, 1480
RsaI GTAC 6 cut(s) 377, 718, 787, 1296, 1595, 1955
RsaNI GTAC 6 cut(s) 376, 717, 786, 1295, 1594, 1954
RseI CAYNNNNRTG 5 cut(s) 36, 648, 1550, 1929, 2007
SapI GCTCTTC 1 cut(s) 1011
SaqAI TTAA 5 cut(s) 240, 431, 725, 819, 1841
SatI GCNGC 2 cut(s) 972, 1230
Sau96I GGNCC 3 cut(s) 69, 214, 659
SchI GAGTC 3 cut(s) 190, 592, 1480
ScrFI CCNGG 5 cut(s) 1137, 1341, 1359, 1914, 1971
SduI GDGCHC 1 cut(s) 160
SexAI ACCWGGT 2 cut(s) 1339, 1912
SfaNI GCATC 4 cut(s) 40, 481, 1921, 2017
SfuI TTCGAA 1 cut(s) 1027
SinI GGWCC 2 cut(s) 214, 659
SmiMI CAYNNNNRTG 5 cut(s) 36, 648, 1550, 1929, 2007
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 8 cut(s) 345, 459, 779, 1202, 1622, 1631, 1842, 1996
SseBI AGGCCT 1 cut(s) 1980
SspMI CTAG 6 cut(s) 87, 96, 144, 408, 1416, 1598
StuI AGGCCT 1 cut(s) 1980
StyD4I CCNGG 5 cut(s) 1135, 1339, 1357, 1912, 1969
TaaI ACNGT 5 cut(s) 400, 935, 1289, 1511, 1818
TaqI TCGA 5 cut(s) 475, 1027, 1501, 1653, 2013
TaqII GACCGA 1 cut(s) 1110
TasI AATT 8 cut(s) 345, 459, 779, 1202, 1622, 1631, 1842, 1996
TatI WGTACW 3 cut(s) 375, 716, 785
TfiI GAWTC 7 cut(s) 545, 684, 856, 1024, 1277, 1650, 1768
Tru1I TTAA 5 cut(s) 240, 431, 725, 819, 1841
Tru9I TTAA 5 cut(s) 240, 431, 725, 819, 1841
TscAI CASTG 3 cut(s) 79, 669, 1276
TseFI GTSAC 5 cut(s) 82, 89, 116, 1122, 1552
TseI GCWGC 2 cut(s) 971, 1229
Tsp45I GTSAC 5 cut(s) 82, 89, 116, 1122, 1552
TspDTI ATGAA 5 cut(s) 116, 585, 758, 1463, 1631
TspGWI ACGGA 6 cut(s) 123, 206, 677, 753, 961, 1708
TspRI CASTG 3 cut(s) 79, 669, 1276
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 214, 659
VspI ATTAAT 1 cut(s) 1841
XagI CCTNNNNNAGG 2 cut(s) 1362, 1974
XapI RAATTY 2 cut(s) 459, 779
XceI RCATGY 2 cut(s) 570, 873
XmiI GTMKAC 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 1144
XspI CTAG 6 cut(s) 87, 96, 144, 408, 1416, 1598
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.