Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000071

Physical Location & Seq

Genomic Coordinates Reverse (-)

9702495 .. 9704154

Gene Structure 1660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGACACACTTTATATCTTATAAGAATTTTTCTTCTGCTCATTTTGCATTTCTAAGTGCACTTGATTGTACTCATGAACCTCAAAGTTTTGAGGAAGCTAATCAGCTTGATGTATGGAAGCAAGCTATGGCAGATGAACTTCAAGCACTTCATGACAATAATACATGGAGTATTGTTCGAATTCCTAAAGGGAAGAAGGCTGTAGGCAGTCGTTGGGTTTACAAAACGAAGCTTCATTCAGATGGTTCTGTGGAGAGGAATAAGGCTCGCTTGGTAGCTCGTGGTTTTACTCAAACATATGGAGTAGACTACAAGGAGACTTTTGCTCCTGTTGCTAAAATGAGTACAGTGAGAGTTTTGTTATCAGTTGCAGTCAATCATGCTTGGCCTCTATATCAAATGGATGTAAAAAATGCTTTTTTACATGGTGATCTTGAAGAAGAAGTTTACATGAAGTTGCCTCCAGGTCATCCTCAATCTCATGATCTTGAGATAGTTTGCAAGCTTCACAAGTCTATTTATGGCTTAAAGCAATCTCCTCGTGCTTGGTATGCCAAGCTCAGTTCAGTACTTGAGGAAGTTGGTTTTCAAAGAAGCAATGCAGACTCTTCTTTGTTTGTTCGAATTGGTTCAACTAGTAAGCTTATGGTGCTTATCTATGTTGATGATTTAATTGTGACAGGTGACAATATTGAAGAGATTAATACTCTTAAGCAATCTTTGCGTAATAGGTTTGTTTTGAAAGATTTGGGCATTCTCAAATATTTTCTTGGTATAGAAGTGGCCACTTCTCAGAAAGGTCTTTTTCTAAACCAAAGAAAATATGTTCTTGATCTTTTACAAGATACTGATCTGCAGGACTGCAAGCCAGCTTGCACTCCTCTTGACAGCAAGCTCCAATTTGATGTACAAAGTAAGCCTCTCCTGAATGTGAGCTATTATCAAAGGCTGGTAGGCAAGCTTATTTATCTTACCATTACTCGTCTCGATATAGCTTATGTAGTAAGCATTGTCAGTCAGTTCATGCATTCTCCCACTTTGGCTCATCTTCACATTGTTAAACGAATTCTTCGTTATCTCAAAGGCTCCGCTGGAAGAGGTGTGTTGTTTAAAAACAATGGTAATACTGAAATCATGGGTTACACAGATGCTGATTGGGCAGGGAACTCTCTTGATCGTAAATCAACTATCGGTTTCTGCACTTTTGTTGGTGGTAACTTAGTTACCTGGAAAAGCAAGAAGCAGACAGTTGTTGCTCGCTCTAGTGCAGAGGCTGAATATAGAGCTATGGCTTCCACTGCTTGTGAGCTCATTTGGTTAAAAGGTCTTCTATCAGATTTGGGGTTTCCTAGTAGTCAACCATTGTCCCTTTTCTGTGACAATCAAGCTGCAATGCATATTGCTTCTAATCCGGTGTTCCATGAAAGAACCAAACACATAGAAGTTGACTGTCACTACATTCGAGCTCAAGTTCAATCCAAGATCATTGATACTCACTTCACTCGAAGTCATGATCAGTTGGCTGACATTTTCACCAAATCACTTCCCACTGCTCAGTTTCTCAGGATTTTGGGCAAGCTTGGATCAATGAATCCTCTTGATCCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

536

Amino Acids

60.47

Weight (kDa)

8.99

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	53 - 295	7.2e-80	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23160 AT4G23160
fragaria_vesca	FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica	MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis	pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis	RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata	RLG00000002389 RLG00000007980
rosa_roxburghii	Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha	Rh1DG425600
rosa_wichuraiana	Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	1089
AclWI	GGATC	2 cut(s)	1591, 1595
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	3 cut(s)	25, 180, 1065
AfaI	GTAC	4 cut(s)	70, 346, 570, 909
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	7 cut(s)	143, 437, 590, 633, 695, 742, 1475
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	463, 1226
Alw21I	GWGCWC	3 cut(s)	61, 1311, 1468
Alw26I	GTCTC	2 cut(s)	311, 989
Alw44I	GTGCAC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	1591, 1595
AlwNI	CAGNNNCTG	2 cut(s)	1151, 1274
AoxI	GGCC	2 cut(s)	386, 783
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	1388
ApoI	RAATTY	3 cut(s)	25, 180, 1065
AseI	ATTAAT	1 cut(s)	702
Asp700I	GAANNNNTTC	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	440, 695, 1525
AsuII	TTCGAA	2 cut(s)	178, 622
BaeGI	GKGCMC	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	785
BanII	GRGCYC	2 cut(s)	1311, 1468
BauI	CACGAG	2 cut(s)	279, 540
BbsI	GAAGAC	1 cut(s)	1319
Bbv12I	GWGCWC	3 cut(s)	61, 1311, 1468
BbvI	GCAGC	1 cut(s)	1375
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	2 cut(s)	465, 1228
BclI	TGATCA	1 cut(s)	1513
BcoDI	GTCTC	2 cut(s)	311, 989
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	3 cut(s)	636, 1263, 1350
BfmI	CTRYAG	2 cut(s)	201, 854
BfrI	CTTAAG	1 cut(s)	710
BisI	GCNGC	1 cut(s)	1389
BlsI	GCNGC	1 cut(s)	1390
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	465, 1228
BmiI	GGNNCC	1 cut(s)	1087
BmrFI	CCNGG	2 cut(s)	465, 1228
BmsI	GCATC	1 cut(s)	1138
BpiI	GAAGAC	1 cut(s)	1319
BpmI	CTGGAG	1 cut(s)	447
Bpu14I	TTCGAA	2 cut(s)	178, 622
BpuEI	CTTGAG	3 cut(s)	509, 593, 1452
BsaBI	GATNNNNATC	1 cut(s)	849
BsaWI	WCCGGW	1 cut(s)	1411
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bse3DI	GCAATG	2 cut(s)	604, 1398
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	465, 1228
BseGI	GGATG	2 cut(s)	409, 469
BseJI	GATNNNNATC	1 cut(s)	849
BseMI	GCAATG	2 cut(s)	604, 1398
BseMII	CTCAG	4 cut(s)	574, 806, 1568, 1576
BseRI	GAGGAG	2 cut(s)	528, 870
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	1375
BsgI	GTGCAG	2 cut(s)	1183, 1287
BshFI	GGCC	2 cut(s)	388, 785
BsiHKAI	GWGCWC	3 cut(s)	61, 1311, 1468
BsiSI	CCGG	1 cut(s)	1412
BslFI	GGGAC	1 cut(s)	1351
BsmAI	GTCTC	2 cut(s)	311, 989
BsmBI	CGTCTC	1 cut(s)	989
BsmFI	GGGAC	1 cut(s)	1351
BsmI	GAATGC	2 cut(s)	753, 1027
BsnI	GGCC	2 cut(s)	388, 785
Bsp119I	TTCGAA	2 cut(s)	178, 622
Bsp1286I	GDGCHC	3 cut(s)	61, 1311, 1468
Bsp1407I	TGTACA	1 cut(s)	907
Bsp143I	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
BspACI	CCGC	1 cut(s)	1089
BspANI	GGCC	2 cut(s)	388, 785
BspCNI	CTCAG	4 cut(s)	573, 805, 1567, 1575
BspHI	TCATGA	4 cut(s)	73, 151, 481, 1510
BspLI	GGNNCC	1 cut(s)	1087
BspMAI	CTGCAG	1 cut(s)	858
BspPI	GGATC	2 cut(s)	1591, 1595
BspT104I	TTCGAA	2 cut(s)	178, 622
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	604, 1398
BsrGI	TGTACA	1 cut(s)	907
BssMI	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
BssSI	CACGAG	2 cut(s)	279, 540
Bst2BI	CACGAG	2 cut(s)	279, 540
Bst2UI	CCWGG	2 cut(s)	465, 1228
Bst4CI	ACNGT	3 cut(s)	349, 1249, 1451
Bst6I	CTCTTC	3 cut(s)	613, 690, 1090
BstAFI	CTTAAG	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstAUI	TGTACA	1 cut(s)	907
BstBI	TTCGAA	2 cut(s)	178, 622
BstDEI	CTNAG	6 cut(s)	53, 560, 792, 1219, 1554, 1562
BstF5I	GGATG	2 cut(s)	409, 469
BstKTI	GATC	9 cut(s)	433, 487, 835, 853, 1177, 1485, 1516, 1586, 1603
BstMAI	GTCTC	2 cut(s)	311, 989
BstMBI	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 332, 551, 649, 721, 1157, 1298
BstNI	CCWGG	2 cut(s)	465, 1228
BstSCI	CCNGG	2 cut(s)	463, 1226
BstSFI	CTRYAG	2 cut(s)	201, 854
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	1375
BstV2I	GAAGAC	1 cut(s)	1319
BsuRI	GGCC	2 cut(s)	388, 785
BtsCI	GGATG	2 cut(s)	409, 469
BtsI	GCAGTG	2 cut(s)	1296, 1548
BtsIMutI	CAGTG	3 cut(s)	354, 1296, 1548
CaiI	CAGNNNCTG	2 cut(s)	1151, 1274
CciI	TCATGA	4 cut(s)	73, 151, 481, 1510
Csp6I	GTAC	4 cut(s)	69, 345, 569, 908
CviQI	GTAC	4 cut(s)	69, 345, 569, 908
DdeI	CTNAG	6 cut(s)	53, 560, 792, 1219, 1554, 1562
DpnI	GATC	9 cut(s)	432, 486, 834, 852, 1176, 1484, 1515, 1585, 1602
DpnII	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
DraI	TTTAAA	1 cut(s)	1111
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	3 cut(s)	613, 690, 1090
EarI	CTCTTC	3 cut(s)	613, 690, 1090
Ecl136II	GAGCTC	2 cut(s)	1309, 1466
Eco24I	GRGCYC	2 cut(s)	1311, 1468
Eco53kI	GAGCTC	2 cut(s)	1309, 1466
EcoICRI	GAGCTC	2 cut(s)	1309, 1466
EcoRI	GAATTC	2 cut(s)	180, 1065
EcoRII	CCWGG	2 cut(s)	463, 1226
EcoT22I	ATGCAT	2 cut(s)	1029, 1398
EcoT38I	GRGCYC	2 cut(s)	1311, 1468
Esp3I	CGTCTC	1 cut(s)	989
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	1351
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	1513
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	1389
FokI	GGATG	2 cut(s)	416, 456
FriOI	GRGCYC	2 cut(s)	1311, 1468
Fsp4HI	GCNGC	1 cut(s)	1389
FspBI	CTAG	3 cut(s)	636, 1263, 1350
GluI	GCNGC	1 cut(s)	1389
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	388, 785
HapII	CCGG	1 cut(s)	1412
HincII	GTYRAC	2 cut(s)	1358, 1447
HindII	GTYRAC	2 cut(s)	1358, 1447
HindIII	AAGCTT	5 cut(s)	230, 503, 641, 959, 1577
HinfI	GANTC	2 cut(s)	605, 1591
HpaII	CCGG	1 cut(s)	1412
HphI	GGTGA	3 cut(s)	440, 695, 1525
Hpy166II	GTNNAC	6 cut(s)	59, 220, 307, 448, 1358, 1447
Hpy188I	TCNGA	3 cut(s)	241, 795, 1336
Hpy8I	GTNNAC	6 cut(s)	59, 220, 307, 448, 1358, 1447
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	349, 1249, 1451
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 332, 551, 649, 721, 1157, 1298
HpyF3I	CTNAG	6 cut(s)	53, 560, 792, 1219, 1554, 1562
Ksp22I	TGATCA	1 cut(s)	1513
Kzo9I	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
LmnI	GCTCC	3 cut(s)	331, 900, 1091
Lsp1109I	GCAGC	1 cut(s)	1375
LweI	GCATC	1 cut(s)	1138
MaeI	CTAG	3 cut(s)	636, 1263, 1350
MaeIII	GTNAC	7 cut(s)	676, 683, 1139, 1214, 1222, 1376, 1451
MalI	GATC	9 cut(s)	432, 486, 834, 852, 1176, 1484, 1515, 1585, 1602
MboI	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
MhlI	GDGCHC	3 cut(s)	61, 1311, 1468
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	6 cut(s)	25, 180, 624, 672, 899, 1065
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	1 cut(s)	599
Mox20I	TGGCCA	1 cut(s)	785
Mph1103I	ATGCAT	2 cut(s)	1029, 1398
MroXI	GAANNNNTTC	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	7 cut(s)	527, 671, 702, 711, 1059, 1110, 1319
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	1091
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	1412
MspR9I	CCNGG	2 cut(s)	465, 1228
Mva1269I	GAATGC	2 cut(s)	753, 1027
MvaI	CCWGG	2 cut(s)	465, 1228
MwoI	GCNNNNNNNGC	7 cut(s)	44, 332, 551, 649, 721, 1157, 1298
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
NlaIV	GGNNCC	1 cut(s)	1087
NmuCI	GTSAC	4 cut(s)	676, 683, 1376, 1451
NsiI	ATGCAT	2 cut(s)	1029, 1398
NspV	TTCGAA	2 cut(s)	178, 622
PagI	TCATGA	4 cut(s)	73, 151, 481, 1510
PcsI	WCGNNNNNNNCGW	1 cut(s)	1069
PctI	GAATGC	2 cut(s)	753, 1027
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	1591
PkrI	GCNGC	1 cut(s)	1390
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PshBI	ATTAAT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	2 cut(s)	1311, 1468
Psp6I	CCWGG	2 cut(s)	463, 1226
PspGI	CCWGG	2 cut(s)	463, 1226
PspN4I	GGNNCC	1 cut(s)	1087
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	2 cut(s)	1151, 1274
RsaI	GTAC	4 cut(s)	70, 346, 570, 909
RsaNI	GTAC	4 cut(s)	69, 345, 569, 908
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	2 cut(s)	1311, 1468
SaqAI	TTAA	7 cut(s)	527, 671, 702, 711, 1059, 1110, 1319
SatI	GCNGC	1 cut(s)	1389
Sau3AI	GATC	9 cut(s)	430, 484, 832, 850, 1174, 1482, 1513, 1583, 1600
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	2 cut(s)	465, 1228
SduI	GDGCHC	3 cut(s)	61, 1311, 1468
SfaNI	GCATC	1 cut(s)	1138
SfcI	CTRYAG	2 cut(s)	201, 854
SfuI	TTCGAA	2 cut(s)	178, 622
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	4 cut(s)	488, 572, 710, 1467
SmoI	CTYRAG	4 cut(s)	488, 572, 710, 1467
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	6 cut(s)	25, 180, 624, 672, 899, 1065
SsiI	CCGC	1 cut(s)	1089
SspI	AATATT	2 cut(s)	691, 764
SspMI	CTAG	3 cut(s)	636, 1263, 1350
SstI	GAGCTC	2 cut(s)	1311, 1468
StyD4I	CCNGG	2 cut(s)	463, 1226
TaaI	ACNGT	3 cut(s)	349, 1249, 1451
TaqI	TCGA	5 cut(s)	178, 622, 987, 1462, 1504
TasI	AATT	6 cut(s)	25, 180, 624, 672, 899, 1065
TatI	WGTACW	4 cut(s)	68, 344, 568, 907
TfiI	GAWTC	1 cut(s)	1591
Tru1I	TTAA	7 cut(s)	527, 671, 702, 711, 1059, 1110, 1319
Tru9I	TTAA	7 cut(s)	527, 671, 702, 711, 1059, 1110, 1319
TscAI	CASTG	3 cut(s)	354, 1303, 1555
TseFI	GTSAC	4 cut(s)	676, 683, 1376, 1451
TseI	GCWGC	1 cut(s)	1388
Tsp45I	GTSAC	4 cut(s)	676, 683, 1376, 1451
TspDTI	ATGAA	8 cut(s)	90, 140, 150, 224, 467, 1012, 1437, 1604
TspRI	CASTG	3 cut(s)	354, 1303, 1555
Vha464I	CTTAAG	1 cut(s)	710
VneI	GTGCAC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	3 cut(s)	25, 180, 1065
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	3 cut(s)	636, 1263, 1350
ZrmI	AGTACT	1 cut(s)	570
Zsp2I	ATGCAT	2 cut(s)	1029, 1398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.