FvH4_6g35632

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000071
Physical Location & Seq
Forward (+)
28118628 .. 28119690
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35632.t1

Sequence Viewer

Length: 834 bp
ATGCATTCTGAGATTCAGGCTCTTGAAGATAACCGCACATGGTCTATGGTTCCTCTGCCTTCTGGTCATCATCCCATTGGCTGTAAATGGGTTTTCAAAATTAAATATCATGCTGACTGCACAATTGAGCGCTATAAAGCCCAGCTTGTAGCCAAGGGATTCACACAACGCGAAGGTATTGATTATAAAGATACTTTTGCACCTGTTGCGAAATTGATCACTGTGCGTTGTCTGTTAGCAGTTGTTGCAGCAAGGCATTGGCCTTTGCACCAAATGGATGTCCAGAACGCCTTCCTCCATGGTCAACTCACTGAGGAGGTGTATATGCTGCCACCTCCTGGTTATAGTCGACAGGGGGAGAACATGGTTTGTCGACTTCACAAATCCCTCTATGGTCTTAAGCAAGCATCTCGCAGGAACAATGAGAAGGCAATTGAAGATCTCAAGAAGTTCCTCAACAGTTGTTTTAAGATTAAAGATCTTGGACCCCTCAAGTATTTTCTTGGCATAGAAGTTGCACGATCCAAAGCTGGAATTTCAATTTGTCAACGTAAGTATACGTTGGATATATTGGAGGAGGCAGGACTTCTTGGTGTGAAACCTACCAAGGTACCTATGGAGCCTGACTTGGTGTTAACTGAGAAAGGGAGTGATGCTCTCAAGGATCCCTCTCGGAACCTAAGGTGCATCATCTCAAAACAGCAAACCGACTTCTTCAATACCTTAAGGCAGTTCCTGGACAAGGCTTATTATTCCCTTCAGATAGTTCACCCTTGTTGGTCGCCTATTGCGATGCAGACTGGGCAAGATGTCCCATCACCAGAAGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

278

Amino Acids

31.59

Weight (kDa)

8.9

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 141 1.3e-45 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 141 - 207 9.6e-13 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 338
AccI GTMKAC 3 cut(s) 349, 373, 557
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 34
AclWI GGATC 3 cut(s) 516, 659, 672
AcsI RAATTY 1 cut(s) 534
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 1 cut(s) 612
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 338, 742
AflII CTTAAG 2 cut(s) 398, 724
AgsI TTSAA 5 cut(s) 26, 97, 437, 540, 718
AjnI CCWGG 2 cut(s) 337, 735
AluBI AGCT 2 cut(s) 145, 530
AluI AGCT 2 cut(s) 145, 530
AlwI GGATC 3 cut(s) 516, 659, 672
AlwNI CAGNNNCTG 1 cut(s) 736
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 248, 328
ApoI RAATTY 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 610
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 761, 810
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 680
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BamHI GGATCC 1 cut(s) 664
BanI GGYRCC 1 cut(s) 610
BbvI GCAGC 2 cut(s) 260, 315
BccI CCATC 1 cut(s) 823
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 339, 737
BclI TGATCA 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 133
BfrI CTTAAG 2 cut(s) 398, 724
BglII AGATCT 2 cut(s) 439, 478
BisI GCNGC 2 cut(s) 249, 329
BlsI GCNGC 2 cut(s) 250, 330
Bme1390I CCNGG 2 cut(s) 339, 737
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 6 cut(s) 51, 487, 612, 621, 666, 677
BmrFI CCNGG 2 cut(s) 339, 737
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 4 cut(s) 416, 643, 696, 783
BmuI ACTGGG 1 cut(s) 810
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpuEI CTTGAG 3 cut(s) 428, 476, 644
BsaJI CCNNGG 3 cut(s) 153, 298, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 742
Bse1I ACTGG 1 cut(s) 805
Bse21I CCTNAGG 1 cut(s) 680
BseBI CCWGG 2 cut(s) 339, 737
BseDI CCNNGG 3 cut(s) 153, 298, 606
BseGI GGATG 2 cut(s) 70, 283
BseLI CCNNNNNNNGG 2 cut(s) 338, 742
BseMII CTCAG 2 cut(s) 303, 630
BseNI ACTGG 1 cut(s) 805
BseRI GAGGAG 2 cut(s) 329, 590
BseXI GCAGC 2 cut(s) 260, 315
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 610
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 2 cut(s) 338, 742
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 6 cut(s) 216, 439, 478, 521, 664, 826
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 304, 631
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 6 cut(s) 51, 487, 612, 621, 666, 677
BspPI GGATC 3 cut(s) 516, 659, 672
BspT107I GGYRCC 1 cut(s) 610
BspTI CTTAAG 2 cut(s) 398, 724
BsrI ACTGG 1 cut(s) 805
BssECI CCNNGG 3 cut(s) 153, 298, 606
BssMI GATC 6 cut(s) 216, 439, 478, 521, 664, 826
BssNAI GTATAC 1 cut(s) 558
BssT1I CCWWGG 3 cut(s) 153, 298, 606
Bst1107I GTATAC 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 339, 737
Bst4CI ACNGT 2 cut(s) 223, 461
BstAFI CTTAAG 2 cut(s) 398, 724
BstAPI GCANNNNNTGC 2 cut(s) 206, 245
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 4 cut(s) 9, 312, 639, 680
BstDSI CCRYGG 1 cut(s) 298
BstENI CCTNNNNNAGG 1 cut(s) 740
BstF5I GGATG 2 cut(s) 70, 283
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 6 cut(s) 219, 442, 481, 524, 667, 829
BstMBI GATC 6 cut(s) 216, 439, 478, 521, 664, 826
BstMWI GCNNNNNNNGC 3 cut(s) 206, 245, 802
BstNI CCWGG 2 cut(s) 339, 737
BstSCI CCNGG 2 cut(s) 337, 735
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 260, 315
BstX2I RGATCY 3 cut(s) 439, 478, 664
BstYI RGATCY 3 cut(s) 439, 478, 664
BstZ17I GTATAC 1 cut(s) 558
Bsu36I CCTNAGG 1 cut(s) 680
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 806
BtsCI GGATG 2 cut(s) 70, 283
BtsIMutI CAGTG 2 cut(s) 219, 309
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 736
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 611
CviAII CATG 4 cut(s) 39, 110, 299, 364
CviJI RGCY 9 cut(s) 20, 81, 140, 145, 152, 262, 530, 622, 746
CviKI_1 RGCY 9 cut(s) 20, 81, 140, 145, 152, 262, 530, 622, 746
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 4 cut(s) 9, 312, 639, 680
DpnI GATC 6 cut(s) 218, 441, 480, 523, 666, 828
DpnII GATC 6 cut(s) 216, 439, 478, 521, 664, 826
Eco130I CCWWGG 3 cut(s) 153, 298, 606
Eco47I GGWCC 1 cut(s) 485
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 743
Eco81I CCTNAGG 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 740
EcoRII CCWGG 2 cut(s) 337, 735
EcoT14I CCWWGG 3 cut(s) 153, 298, 606
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 153, 298, 606
FaeI CATG 4 cut(s) 42, 113, 302, 367
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 797
FatI CATG 4 cut(s) 38, 109, 298, 363
FbaI TGATCA 1 cut(s) 216
FblI GTMKAC 3 cut(s) 349, 373, 557
Fnu4HI GCNGC 2 cut(s) 249, 329
FokI GGATG 2 cut(s) 57, 290
Fsp4HI GCNGC 2 cut(s) 249, 329
GlaI GCGC 1 cut(s) 131
GluI GCNGC 2 cut(s) 249, 329
GsaI CCCAGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 262
HhaI GCGC 1 cut(s) 132
Hin1II CATG 4 cut(s) 42, 113, 302, 367
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 5 cut(s) 305, 350, 374, 548, 636
HindII GTYRAC 5 cut(s) 305, 350, 374, 548, 636
HinfI GANTC 2 cut(s) 13, 159
HpaI GTTAAC 1 cut(s) 636
HphI GGTGA 2 cut(s) 761, 810
Hpy166II GTNNAC 7 cut(s) 305, 350, 374, 548, 558, 636, 769
Hpy188I TCNGA 3 cut(s) 10, 675, 762
Hpy188III TCNNGA 3 cut(s) 23, 283, 445
Hpy8I GTNNAC 7 cut(s) 305, 350, 374, 548, 558, 636, 769
HpyAV CCTTC 5 cut(s) 69, 167, 301, 421, 767
HpyCH4III ACNGT 2 cut(s) 223, 461
HpyCH4IV ACGT 2 cut(s) 550, 560
HpyCH4V TGCA 8 cut(s) 4, 120, 200, 248, 268, 518, 687, 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 245, 802
HpyF3I CTNAG 4 cut(s) 9, 312, 639, 680
HpySE526I ACGT 2 cut(s) 550, 560
Hsp92II CATG 4 cut(s) 42, 113, 302, 367
HspAI GCGC 1 cut(s) 130
KpnI GGTACC 1 cut(s) 614
Ksp22I TGATCA 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 636
Kzo9I GATC 6 cut(s) 216, 439, 478, 521, 664, 826
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 260, 315
LweI GCATC 4 cut(s) 416, 643, 696, 783
MaeII ACGT 2 cut(s) 550, 560
MalI GATC 6 cut(s) 218, 441, 480, 523, 666, 828
MboI GATC 6 cut(s) 216, 439, 478, 521, 664, 826
MboII GAAGA 3 cut(s) 38, 449, 706
MfeI CAATTG 2 cut(s) 123, 432
MflI RGATCY 3 cut(s) 439, 478, 664
MluCI AATT 6 cut(s) 99, 123, 212, 432, 534, 540
MmeI TCCRAC 1 cut(s) 543
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 6 cut(s) 102, 399, 468, 474, 635, 725
MspCI CTTAAG 2 cut(s) 398, 724
MspR9I CCNGG 2 cut(s) 339, 737
MunI CAATTG 2 cut(s) 123, 432
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 339, 737
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 206, 245, 802
NcoI CCATGG 1 cut(s) 298
NdeII GATC 6 cut(s) 216, 439, 478, 521, 664, 826
NlaIII CATG 4 cut(s) 42, 113, 302, 367
NlaIV GGNNCC 6 cut(s) 51, 487, 612, 621, 666, 677
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 788
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 13, 159
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 2 cut(s) 250, 330
PsiI TTATAA 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 337, 735
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 337, 735
PspN4I GGNNCC 6 cut(s) 51, 487, 612, 621, 666, 677
PspPI GGNCC 1 cut(s) 485
PstNI CAGNNNCTG 1 cut(s) 736
PsuI RGATCY 3 cut(s) 439, 478, 664
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
SalI GTCGAC 2 cut(s) 348, 372
SaqAI TTAA 6 cut(s) 102, 399, 468, 474, 635, 725
SatI GCNGC 2 cut(s) 249, 329
Sau3AI GATC 6 cut(s) 216, 439, 478, 521, 664, 826
Sau96I GGNCC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 339, 737
SfaNI GCATC 4 cut(s) 416, 643, 696, 783
SinI GGWCC 1 cut(s) 485
SmlI CTYRAG 5 cut(s) 398, 443, 491, 659, 724
SmoI CTYRAG 5 cut(s) 398, 443, 491, 659, 724
Sse9I AATT 6 cut(s) 99, 123, 212, 432, 534, 540
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 337, 735
StyI CCWWGG 3 cut(s) 153, 298, 606
TaaI ACNGT 2 cut(s) 223, 461
TaiI ACGT 2 cut(s) 553, 563
TaqI TCGA 2 cut(s) 349, 373
TasI AATT 6 cut(s) 99, 123, 212, 432, 534, 540
TfiI GAWTC 2 cut(s) 13, 159
Tru1I TTAA 6 cut(s) 102, 399, 468, 474, 635, 725
Tru9I TTAA 6 cut(s) 102, 399, 468, 474, 635, 725
TscAI CASTG 2 cut(s) 226, 316
TseI GCWGC 2 cut(s) 248, 328
TspRI CASTG 2 cut(s) 226, 316
Van91I CCANNNNNTGG 1 cut(s) 338
Vha464I CTTAAG 2 cut(s) 398, 724
VpaK11BI GGWCC 1 cut(s) 485
XagI CCTNNNNNAGG 1 cut(s) 740
XapI RAATTY 1 cut(s) 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 3 cut(s) 349, 373, 557
XmnI GAANNNNTTC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.