Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 3 - 84 | 1.7e-16 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 401 |
| AciI | CCGC | 1 cut(s) | 4 |
| AcsI | RAATTY | 2 cut(s) | 279, 574 |
| AcuI | CTGAAG | 2 cut(s) | 305, 507 |
| AdeI | CACNNNGTG | 1 cut(s) | 517 |
| AfaI | GTAC | 2 cut(s) | 194, 290 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 311 |
| AgsI | TTSAA | 2 cut(s) | 295, 565 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 397 |
| AjnI | CCWGG | 2 cut(s) | 215, 304 |
| AleI | CACNNNNGTG | 1 cut(s) | 422 |
| AluBI | AGCT | 6 cut(s) | 77, 151, 187, 302, 491, 608 |
| AluI | AGCT | 6 cut(s) | 77, 151, 187, 302, 491, 608 |
| Alw26I | GTCTC | 1 cut(s) | 139 |
| ApeKI | GCWGC | 1 cut(s) | 605 |
| ApoI | RAATTY | 2 cut(s) | 279, 574 |
| AspA2I | CCTAGG | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 1 cut(s) | 194 |
| AsuNHI | GCTAGC | 1 cut(s) | 151 |
| AvrII | CCTAGG | 1 cut(s) | 199 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| BbvI | GCAGC | 1 cut(s) | 617 |
| BccI | CCATC | 1 cut(s) | 124 |
| BciT130I | CCWGG | 2 cut(s) | 217, 306 |
| BcoDI | GTCTC | 1 cut(s) | 139 |
| BfaI | CTAG | 3 cut(s) | 152, 200, 480 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BisI | GCNGC | 1 cut(s) | 606 |
| BlnI | CCTAGG | 1 cut(s) | 199 |
| BlsI | GCNGC | 1 cut(s) | 607 |
| BmcAI | AGTACT | 2 cut(s) | 194, 290 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 306 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 397 |
| BmrFI | CCNGG | 2 cut(s) | 217, 306 |
| BmsI | GCATC | 3 cut(s) | 64, 256, 355 |
| BmtI | GCTAGC | 1 cut(s) | 155 |
| BpmI | CTGGAG | 1 cut(s) | 288 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 365 |
| BsaAI | YACGTR | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 2 cut(s) | 199, 216 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 311 |
| Bse1I | ACTGG | 1 cut(s) | 115 |
| BseBI | CCWGG | 2 cut(s) | 217, 306 |
| BseDI | CCNNGG | 2 cut(s) | 199, 216 |
| BseGI | GGATG | 2 cut(s) | 100, 271 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 311 |
| BseMII | CTCAG | 3 cut(s) | 45, 150, 483 |
| BseNI | ACTGG | 1 cut(s) | 115 |
| BseXI | GCAGC | 1 cut(s) | 617 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 311 |
| BsmAI | GTCTC | 1 cut(s) | 139 |
| BspACI | CCGC | 1 cut(s) | 4 |
| BspCNI | CTCAG | 3 cut(s) | 44, 151, 484 |
| BspMAI | CTGCAG | 1 cut(s) | 144 |
| BspOI | GCTAGC | 1 cut(s) | 155 |
| BsrI | ACTGG | 1 cut(s) | 115 |
| BssECI | CCNNGG | 2 cut(s) | 199, 216 |
| BssT1I | CCWWGG | 1 cut(s) | 199 |
| Bst2UI | CCWGG | 2 cut(s) | 217, 306 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 1 cut(s) | 443 |
| BstBAI | YACGTR | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 31, 159, 492 |
| BstF5I | GGATG | 2 cut(s) | 100, 271 |
| BstMAI | GTCTC | 1 cut(s) | 139 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 148, 374 |
| BstNI | CCWGG | 2 cut(s) | 217, 306 |
| BstSCI | CCNGG | 2 cut(s) | 215, 304 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 1 cut(s) | 617 |
| BtsCI | GGATG | 2 cut(s) | 100, 271 |
| BtsIMutI | CAGTG | 2 cut(s) | 108, 360 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| Csp6I | GTAC | 2 cut(s) | 193, 289 |
| CviAII | CATG | 3 cut(s) | 262, 444, 580 |
| CviQI | GTAC | 2 cut(s) | 193, 289 |
| DdeI | CTNAG | 3 cut(s) | 31, 159, 492 |
| DraIII | CACNNNGTG | 1 cut(s) | 517 |
| DriI | GACNNNNNGTC | 1 cut(s) | 397 |
| Eam1104I | CTCTTC | 1 cut(s) | 443 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 397 |
| EarI | CTCTTC | 1 cut(s) | 443 |
| Eco130I | CCWWGG | 1 cut(s) | 199 |
| Eco57I | CTGAAG | 2 cut(s) | 305, 507 |
| EcoRI | GAATTC | 1 cut(s) | 279 |
| EcoRII | CCWGG | 2 cut(s) | 215, 304 |
| EcoT14I | CCWWGG | 1 cut(s) | 199 |
| ErhI | CCWWGG | 1 cut(s) | 199 |
| FaeI | CATG | 3 cut(s) | 265, 447, 583 |
| FatI | CATG | 3 cut(s) | 261, 443, 579 |
| FblI | GTMKAC | 1 cut(s) | 401 |
| Fnu4HI | GCNGC | 1 cut(s) | 606 |
| FokI | GGATG | 2 cut(s) | 107, 278 |
| Fsp4HI | GCNGC | 1 cut(s) | 606 |
| FspBI | CTAG | 3 cut(s) | 152, 200, 480 |
| GluI | GCNGC | 1 cut(s) | 606 |
| GsuI | CTGGAG | 1 cut(s) | 288 |
| Hin1II | CATG | 3 cut(s) | 265, 447, 583 |
| HincII | GTYRAC | 1 cut(s) | 402 |
| HindII | GTYRAC | 1 cut(s) | 402 |
| HinfI | GANTC | 2 cut(s) | 231, 256 |
| HphI | GGTGA | 1 cut(s) | 194 |
| Hpy166II | GTNNAC | 1 cut(s) | 402 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 160, 285 |
| Hpy188III | TCNNGA | 1 cut(s) | 344 |
| Hpy8I | GTNNAC | 1 cut(s) | 402 |
| HpyAV | CCTTC | 5 cut(s) | 61, 166, 221, 303, 390 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 2 cut(s) | 475, 550 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 368, 583 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 148, 374 |
| HpyF3I | CTNAG | 3 cut(s) | 31, 159, 492 |
| HpySE526I | ACGT | 2 cut(s) | 475, 550 |
| Hsp92II | CATG | 3 cut(s) | 265, 447, 583 |
| LmnI | GCTCC | 1 cut(s) | 307 |
| LpnPI | CCDG | 9 cut(s) | 4, 96, 202, 229, 257, 291, 318, 363, 393 |
| Lsp1109I | GCAGC | 1 cut(s) | 617 |
| LweI | GCATC | 3 cut(s) | 64, 256, 355 |
| MaeI | CTAG | 3 cut(s) | 152, 200, 480 |
| MaeII | ACGT | 2 cut(s) | 475, 550 |
| MaeIII | GTNAC | 7 cut(s) | 14, 70, 257, 410, 431, 439, 546 |
| MboII | GAAGA | 1 cut(s) | 460 |
| MluCI | AATT | 5 cut(s) | 81, 204, 279, 524, 574 |
| MlyI | GAGTC | 1 cut(s) | 265 |
| MnlI | CCTC | 6 cut(s) | 166, 202, 240, 340, 422, 494 |
| MslI | CAYNNNNRTG | 2 cut(s) | 264, 422 |
| MspR9I | CCNGG | 2 cut(s) | 217, 306 |
| MvaI | CCWGG | 2 cut(s) | 217, 306 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 148, 374 |
| NheI | GCTAGC | 1 cut(s) | 151 |
| NlaIII | CATG | 3 cut(s) | 265, 447, 583 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| OliI | CACNNNNGTG | 1 cut(s) | 422 |
| PfeI | GAWTC | 1 cut(s) | 231 |
| PfoI | TCCNGGA | 1 cut(s) | 304 |
| PkrI | GCNGC | 1 cut(s) | 607 |
| PleI | GAGTC | 1 cut(s) | 264 |
| PpsI | GAGTC | 1 cut(s) | 264 |
| Ppu21I | YACGTR | 1 cut(s) | 551 |
| Psp6I | CCWGG | 2 cut(s) | 215, 304 |
| PspGI | CCWGG | 2 cut(s) | 215, 304 |
| PstI | CTGCAG | 1 cut(s) | 144 |
| RsaI | GTAC | 2 cut(s) | 194, 290 |
| RsaNI | GTAC | 2 cut(s) | 193, 289 |
| RseI | CAYNNNNRTG | 2 cut(s) | 264, 422 |
| SalI | GTCGAC | 1 cut(s) | 400 |
| SatI | GCNGC | 1 cut(s) | 606 |
| ScaI | AGTACT | 2 cut(s) | 194, 290 |
| SchI | GAGTC | 1 cut(s) | 265 |
| ScrFI | CCNGG | 2 cut(s) | 217, 306 |
| SfaNI | GCATC | 3 cut(s) | 64, 256, 355 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 264, 422 |
| SmlI | CTYRAG | 2 cut(s) | 50, 344 |
| SmoI | CTYRAG | 2 cut(s) | 50, 344 |
| Sse9I | AATT | 5 cut(s) | 81, 204, 279, 524, 574 |
| SsiI | CCGC | 1 cut(s) | 4 |
| SspI | AATATT | 1 cut(s) | 318 |
| SspMI | CTAG | 3 cut(s) | 152, 200, 480 |
| StyD4I | CCNGG | 2 cut(s) | 215, 304 |
| StyI | CCWWGG | 1 cut(s) | 199 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 2 cut(s) | 478, 553 |
| TaqI | TCGA | 1 cut(s) | 401 |
| TasI | AATT | 5 cut(s) | 81, 204, 279, 524, 574 |
| TatI | WGTACW | 2 cut(s) | 192, 288 |
| TfiI | GAWTC | 1 cut(s) | 231 |
| TscAI | CASTG | 2 cut(s) | 115, 367 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| TseI | GCWGC | 1 cut(s) | 605 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 1 cut(s) | 185 |
| TspGWI | ACGGA | 1 cut(s) | 528 |
| TspRI | CASTG | 2 cut(s) | 115, 367 |
| XapI | RAATTY | 2 cut(s) | 279, 574 |
| XmaJI | CCTAGG | 1 cut(s) | 199 |
| XmiI | GTMKAC | 1 cut(s) | 401 |
| XspI | CTAG | 3 cut(s) | 152, 200, 480 |
| ZrmI | AGTACT | 2 cut(s) | 194, 290 |