FvH4_3g18165

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11610519 .. 11611144
626 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18165.t1

Sequence Viewer

Length: 591 bp
ATGCATAATCCCAGTGTAGATCATATGGATGCTGTTGTGAGGATATTGAGGTACTTGAAGTCAGCTCCTGGGAGAGGAGTAATGTTCTCTAAACACAGCAGTATTCTTGAGGTTTGTGGTTTTACAGATGCAGACTGGGCTGGAAATATTACAGACCGGAGGTCTACATCAGGGTATTTTACCTTTGTGGGAGGTAATCTTGTTACTTGGAAGAGTAAGAAGCAAAAGGTGGTGGCTCGGTCTAGTGCTGAAGCAGAATATAGGGGTATGGCTCATGGAGTATGCGAGTTGTTATGGCTGAAGAATGTGTTGCAAGATTTGGGGGTCAAACCCAAGTGTGCTATGCAGTTGTATTGTGACAACAAGGCAGCTATTGATATCTCACAAAATCCTGTACAACATGATCGTACCAAGCATGTGGAGGTTGATCGTCACTTTATAAAGGAGAAGCTAGATGCAAAGATCATTAGCTTTCCTTTTGTCCCTACAGAGGAGCAACTTGCAGATATACTCACAAAAGGAGTTTCTAAGAAGGCCTTTTATGACTCACTTGGCAAGTTGGGCATGGTTGATGTATATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

21.92

Weight (kDa)

8.97

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
AccI GTMKAC 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 270, 320
AfaI GTAC 3 cut(s) 53, 396, 409
AfiI CCNNNNNNNGG 2 cut(s) 74, 490
AgsI TTSAA 1 cut(s) 58
AhdI GACNNNNNGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 4 cut(s) 65, 371, 451, 471
AluI AGCT 4 cut(s) 65, 371, 451, 471
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 1 cut(s) 368
AspLEI GCGC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 69
BfaI CTAG 2 cut(s) 243, 452
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 69
BmeRI GACNNNNNGTC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 69
BmrI ACTGGG 2 cut(s) 6, 145
BmsI GCATC 3 cut(s) 19, 118, 445
BmuI ACTGGG 2 cut(s) 6, 145
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 490
Bse1I ACTGG 2 cut(s) 12, 140
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 74, 490
BseNI ACTGG 2 cut(s) 12, 140
BseRI GAGGAG 2 cut(s) 90, 506
BseXI GCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 74, 490
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 4 cut(s) 19, 403, 427, 462
BspANI GGCC 1 cut(s) 536
BsrGI TGTACA 1 cut(s) 394
BsrI ACTGG 2 cut(s) 12, 140
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 4 cut(s) 19, 403, 427, 462
Bst2UI CCWGG 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 528
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 4 cut(s) 22, 406, 430, 465
BstMBI GATC 4 cut(s) 19, 403, 427, 462
BstMWI GCNNNNNNNGC 2 cut(s) 137, 561
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 418
BsuRI GGCC 1 cut(s) 536
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 1 cut(s) 583
Csp6I GTAC 3 cut(s) 52, 395, 408
CviAII CATG 4 cut(s) 275, 401, 416, 565
CviJI RGCY 9 cut(s) 65, 140, 236, 272, 298, 371, 451, 471, 536
CviKI_1 RGCY 9 cut(s) 65, 140, 236, 272, 298, 371, 451, 471, 536
CviQI GTAC 3 cut(s) 52, 395, 408
DdeI CTNAG 1 cut(s) 528
DpnI GATC 4 cut(s) 21, 405, 429, 464
DpnII GATC 4 cut(s) 19, 403, 427, 462
DriI GACNNNNNGTC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 206
Eam1105I GACNNNNNGTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 536
Eco32I GATATC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 270, 320
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 67
EcoRV GATATC 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 278, 404, 419, 568
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 274, 400, 415, 564
FauNDI CATATG 1 cut(s) 24
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 2 cut(s) 243, 452
GlaI GCGC 1 cut(s) 582
GluI GCNGC 1 cut(s) 369
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 583
Hin1II CATG 4 cut(s) 278, 404, 419, 568
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HinfI GANTC 1 cut(s) 545
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 526
HpyCH4V TGCA 6 cut(s) 4, 131, 313, 346, 458, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 561
HpyF3I CTNAG 1 cut(s) 528
Hsp92II CATG 4 cut(s) 278, 404, 419, 568
HspAI GCGC 1 cut(s) 581
Kzo9I GATC 4 cut(s) 19, 403, 427, 462
LmnI GCTCC 2 cut(s) 70, 493
LpnPI CCDG 8 cut(s) 25, 54, 81, 121, 126, 156, 170, 405
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 3 cut(s) 19, 118, 445
MaeI CTAG 2 cut(s) 243, 452
MaeIII GTNAC 3 cut(s) 202, 356, 431
MalI GATC 4 cut(s) 21, 405, 429, 464
MboI GATC 4 cut(s) 19, 403, 427, 462
MboII GAAGA 2 cut(s) 223, 313
MlyI GAGTC 1 cut(s) 539
MnlI CCTC 8 cut(s) 33, 42, 68, 103, 153, 185, 415, 484
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 137, 561
NdeI CATATG 1 cut(s) 24
NdeII GATC 4 cut(s) 19, 403, 427, 462
NlaIII CATG 4 cut(s) 278, 404, 419, 568
NmuCI GTSAC 2 cut(s) 356, 431
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 419
PceI AGGCCT 1 cut(s) 536
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
PsiI TTATAA 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 3 cut(s) 53, 396, 409
RsaNI GTAC 3 cut(s) 52, 395, 408
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 4 cut(s) 19, 403, 427, 462
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 69
SfaNI GCATC 3 cut(s) 19, 118, 445
SfcI CTRYAG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SseBI AGGCCT 1 cut(s) 536
SspI AATATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 243, 452
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 67
TaqII GACCGA 1 cut(s) 228
TatI WGTACW 1 cut(s) 394
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 356, 431
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 2 cut(s) 356, 431
TspRI CASTG 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 72
XceI RCATGY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 2 cut(s) 243, 452
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.