Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 27 - 73 | 2.5e-18 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 415 - 488 | 8.8e-13 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 520 - 580 | 6.2e-07 | GAG-pre-integrase domain |
| rve | PF00665 | 597 - 691 | 8.7e-10 | Integrase core domain |
| SH3_retrovirus | PF25597 | 765 - 826 | 1.5e-21 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 1031 - 1273 | 7.8e-75 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 912, 3127 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4277 |
| Acc36I | ACCTGC | 2 cut(s) | 912, 3127 |
| AccB1I | GGYRCC | 1 cut(s) | 1259 |
| AccI | GTMKAC | 1 cut(s) | 3892 |
| AccIII | TCCGGA | 1 cut(s) | 229 |
| AciI | CCGC | 6 cut(s) | 1206, 2772, 3935, 3977, 4202, 4457 |
| AclI | AACGTT | 1 cut(s) | 2158 |
| AclWI | GGATC | 8 cut(s) | 295, 439, 529, 623, 636, 1351, 2333, 3035 |
| AcoI | YGGCCR | 3 cut(s) | 696, 1084, 3714 |
| AcsI | RAATTY | 5 cut(s) | 55, 406, 593, 1289, 2006 |
| AcuI | CTGAAG | 2 cut(s) | 121, 155 |
| AcvI | CACGTG | 2 cut(s) | 2435, 2714 |
| AcyI | GRCGYC | 1 cut(s) | 4022 |
| AdeI | CACNNNGTG | 2 cut(s) | 854, 4000 |
| AflIII | ACRYGT | 4 cut(s) | 947, 1972, 2057, 2630 |
| AgeI | ACCGGT | 1 cut(s) | 1838 |
| AhlI | ACTAGT | 1 cut(s) | 121 |
| AjiI | CACGTC | 1 cut(s) | 1593 |
| AjnI | CCWGG | 3 cut(s) | 94, 3098, 3397 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2133, 2165 |
| Alw21I | GWGCWC | 6 cut(s) | 958, 1129, 1705, 2131, 2569, 2659 |
| Alw26I | GTCTC | 7 cut(s) | 476, 697, 1486, 3058, 3560, 3669, 3837 |
| Alw44I | GTGCAC | 3 cut(s) | 1125, 1701, 2565 |
| AlwI | GGATC | 8 cut(s) | 295, 439, 529, 623, 636, 1351, 2333, 3035 |
| Aor13HI | TCCGGA | 1 cut(s) | 229 |
| ApaLI | GTGCAC | 3 cut(s) | 1125, 1701, 2565 |
| ApoI | RAATTY | 5 cut(s) | 55, 406, 593, 1289, 2006 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1296, 1328, 2203, 2235, 2849, 2881 |
| AseI | ATTAAT | 3 cut(s) | 1793, 2199, 2526 |
| AsiGI | ACCGGT | 1 cut(s) | 1838 |
| AsiSI | GCGATCGC | 1 cut(s) | 868 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3647, 4572 |
| AspLEI | GCGC | 4 cut(s) | 806, 966, 3082, 3994 |
| AspS9I | GGNCC | 5 cut(s) | 1513, 1543, 2000, 3004, 4459 |
| AsuC2I | CCSGG | 2 cut(s) | 3173, 4026 |
| AsuII | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| AvaII | GGWCC | 4 cut(s) | 1513, 2000, 3004, 4459 |
| BaeGI | GKGCMC | 4 cut(s) | 1129, 1705, 2569, 4096 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1875, 1908 |
| BalI | TGGCCA | 1 cut(s) | 3716 |
| BamHI | GGATCC | 1 cut(s) | 628 |
| BanI | GGYRCC | 1 cut(s) | 1259 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1192, 1224, 4105, 4137 |
| BauI | CACGAG | 4 cut(s) | 674, 1461, 1878, 2124 |
| BbrPI | CACGTG | 2 cut(s) | 2435, 2714 |
| Bbv12I | GWGCWC | 6 cut(s) | 958, 1129, 1705, 2131, 2569, 2659 |
| BceAI | ACGGC | 1 cut(s) | 1099 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 247, 281, 675, 709, 4123, 4157 |
| BciT130I | CCWGG | 3 cut(s) | 96, 3100, 3399 |
| BclI | TGATCA | 6 cut(s) | 13, 88, 1267, 1870, 2272, 4419 |
| BcnI | CCSGG | 2 cut(s) | 3173, 4026 |
| BcoDI | GTCTC | 7 cut(s) | 476, 697, 1486, 3058, 3560, 3669, 3837 |
| BcuI | ACTAGT | 1 cut(s) | 121 |
| BfmI | CTRYAG | 3 cut(s) | 925, 2392, 3813 |
| BfuAI | ACCTGC | 2 cut(s) | 912, 3127 |
| BglII | AGATCT | 1 cut(s) | 4414 |
| BlpI | GCTNAGC | 1 cut(s) | 3270 |
| Bme1390I | CCNGG | 5 cut(s) | 96, 3100, 3173, 3399, 4026 |
| Bme18I | GGWCC | 4 cut(s) | 1513, 2000, 3004, 4459 |
| BmgBI | CACGTC | 1 cut(s) | 1593 |
| BmgT120I | GGNCC | 5 cut(s) | 1513, 1543, 2000, 3004, 4459 |
| BmiI | GGNNCC | 5 cut(s) | 251, 630, 1261, 3006, 3104 |
| BmrFI | CCNGG | 5 cut(s) | 96, 3100, 3173, 3399, 4026 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1998, 3002 |
| BpmI | CTGGAG | 1 cut(s) | 3121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1353 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3270 |
| Bpu14I | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| BpuEI | CTTGAG | 6 cut(s) | 371, 1027, 1146, 1421, 2361, 3488 |
| BpuMI | CCSGG | 2 cut(s) | 3173, 4026 |
| BsaAI | YACGTR | 4 cut(s) | 2435, 2714, 2975, 4070 |
| BsaBI | GATNNNNATC | 1 cut(s) | 436 |
| BsaHI | GRCGYC | 1 cut(s) | 4022 |
| BsaJI | CCNNGG | 4 cut(s) | 720, 3000, 3787, 4221 |
| BsaWI | WCCGGW | 5 cut(s) | 229, 1031, 1838, 3262, 3779 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1547, 1577, 2197, 2227, 2713, 2743, 3244, 3274 |
| Bse118I | RCCGGY | 3 cut(s) | 715, 1166, 1838 |
| Bse1I | ACTGG | 3 cut(s) | 1263, 4129, 4346 |
| Bse3DI | GCAATG | 2 cut(s) | 251, 3825 |
| Bse8I | GATNNNNATC | 1 cut(s) | 436 |
| BseAI | TCCGGA | 1 cut(s) | 229 |
| BseBI | CCWGG | 3 cut(s) | 96, 3100, 3399 |
| BseDI | CCNNGG | 4 cut(s) | 720, 3000, 3787, 4221 |
| BseJI | GATNNNNATC | 1 cut(s) | 436 |
| BseMI | GCAATG | 2 cut(s) | 251, 3825 |
| BseNI | ACTGG | 3 cut(s) | 1263, 4129, 4346 |
| BseRI | GAGGAG | 1 cut(s) | 2490 |
| BseSI | GKGCMC | 4 cut(s) | 1129, 1705, 2569, 4096 |
| BseYI | CCCAGC | 1 cut(s) | 43 |
| BsgI | GTGCAG | 3 cut(s) | 764, 952, 1615 |
| Bsh1285I | CGRYCG | 1 cut(s) | 868 |
| BshNI | GGYRCC | 1 cut(s) | 1259 |
| BshTI | ACCGGT | 1 cut(s) | 1838 |
| BsiEI | CGRYCG | 1 cut(s) | 868 |
| BsiHKAI | GWGCWC | 6 cut(s) | 958, 1129, 1705, 2131, 2569, 2659 |
| BsiSI | CCGG | 9 cut(s) | 230, 716, 1032, 1167, 1839, 3173, 3263, 3780, 4025 |
| BslFI | GGGAC | 6 cut(s) | 491, 1384, 1603, 2560, 2990, 4041 |
| BsmAI | GTCTC | 7 cut(s) | 476, 697, 1486, 3058, 3560, 3669, 3837 |
| BsmBI | CGTCTC | 1 cut(s) | 3837 |
| BsmFI | GGGAC | 6 cut(s) | 491, 1384, 1603, 2560, 2990, 4041 |
| BsmI | GAATGC | 1 cut(s) | 1010 |
| Bsp119I | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| Bsp1286I | GDGCHC | 7 cut(s) | 958, 1129, 1705, 2131, 2569, 2659, 4096 |
| Bsp13I | TCCGGA | 1 cut(s) | 229 |
| Bsp1407I | TGTACA | 2 cut(s) | 422, 3153 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3270 |
| Bsp19I | CCATGG | 1 cut(s) | 4221 |
| BspACI | CCGC | 6 cut(s) | 1206, 2772, 3935, 3977, 4202, 4457 |
| BspEI | TCCGGA | 1 cut(s) | 229 |
| BspHI | TCATGA | 4 cut(s) | 564, 1899, 2449, 4354 |
| BspLI | GGNNCC | 5 cut(s) | 251, 630, 1261, 3006, 3104 |
| BspMI | ACCTGC | 2 cut(s) | 912, 3127 |
| BspPI | GGATC | 8 cut(s) | 295, 439, 529, 623, 636, 1351, 2333, 3035 |
| BspQI | GCTCTTC | 2 cut(s) | 2136, 2886 |
| BspT104I | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| BspT107I | GGYRCC | 1 cut(s) | 1259 |
| BsrDI | GCAATG | 2 cut(s) | 251, 3825 |
| BsrFI | RCCGGY | 3 cut(s) | 715, 1166, 1838 |
| BsrGI | TGTACA | 2 cut(s) | 422, 3153 |
| BsrI | ACTGG | 3 cut(s) | 1263, 4129, 4346 |
| BssAI | RCCGGY | 3 cut(s) | 715, 1166, 1838 |
| BssECI | CCNNGG | 4 cut(s) | 720, 3000, 3787, 4221 |
| BssNI | GRCGYC | 1 cut(s) | 4022 |
| BssSI | CACGAG | 4 cut(s) | 674, 1461, 1878, 2124 |
| BssT1I | CCWWGG | 2 cut(s) | 3787, 4221 |
| Bst2BI | CACGAG | 4 cut(s) | 674, 1461, 1878, 2124 |
| Bst2UI | CCWGG | 3 cut(s) | 96, 3100, 3399 |
| Bst6I | CTCTTC | 4 cut(s) | 1013, 2136, 2766, 2886 |
| BstACI | GRCGYC | 1 cut(s) | 4022 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 975 |
| BstAUI | TGTACA | 2 cut(s) | 422, 3153 |
| BstBAI | YACGTR | 4 cut(s) | 2435, 2714, 2975, 4070 |
| BstBI | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| BstDSI | CCRYGG | 2 cut(s) | 3000, 4221 |
| BstEII | GGTNACC | 2 cut(s) | 1332, 1817 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 795 |
| BstHHI | GCGC | 4 cut(s) | 806, 966, 3082, 3994 |
| BstMAI | GTCTC | 7 cut(s) | 476, 697, 1486, 3058, 3560, 3669, 3837 |
| BstMCI | CGRYCG | 1 cut(s) | 868 |
| BstNI | CCWGG | 3 cut(s) | 96, 3100, 3399 |
| BstNSI | RCATGY | 4 cut(s) | 951, 2017, 2061, 2634 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1998, 3002 |
| BstPI | GGTNACC | 2 cut(s) | 1332, 1817 |
| BstSCI | CCNGG | 5 cut(s) | 94, 3098, 3171, 3397, 4024 |
| BstSFI | CTRYAG | 3 cut(s) | 925, 2392, 3813 |
| BstSLI | GKGCMC | 4 cut(s) | 1129, 1705, 2569, 4096 |
| BstX2I | RGATCY | 5 cut(s) | 431, 534, 628, 3040, 4414 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2081 |
| BstYI | RGATCY | 5 cut(s) | 431, 534, 628, 3040, 4414 |
| BtgI | CCRYGG | 2 cut(s) | 3000, 4221 |
| BtrI | CACGTC | 1 cut(s) | 1593 |
| BtsI | GCAGTG | 3 cut(s) | 322, 1603, 3645 |
| BtsIMutI | CAGTG | 6 cut(s) | 322, 1261, 1270, 1603, 3573, 3645 |
| BveI | ACCTGC | 2 cut(s) | 912, 3127 |
| CciI | TCATGA | 4 cut(s) | 564, 1899, 2449, 4354 |
| CfoI | GCGC | 4 cut(s) | 806, 966, 3082, 3994 |
| Cfr10I | RCCGGY | 3 cut(s) | 715, 1166, 1838 |
| Cfr13I | GGNCC | 5 cut(s) | 1513, 1543, 2000, 3004, 4459 |
| CseI | GACGC | 5 cut(s) | 2019, 2766, 2891, 4030, 4326 |
| CspAI | ACCGGT | 1 cut(s) | 1838 |
| DraI | TTTAAA | 1 cut(s) | 985 |
| DraIII | CACNNNGTG | 2 cut(s) | 854, 4000 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4277 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4277 |
| EaeI | YGGCCR | 3 cut(s) | 696, 1084, 3714 |
| Eam1104I | CTCTTC | 4 cut(s) | 1013, 2136, 2766, 2886 |
| EarI | CTCTTC | 4 cut(s) | 1013, 2136, 2766, 2886 |
| Eco130I | CCWWGG | 2 cut(s) | 3787, 4221 |
| Eco32I | GATATC | 3 cut(s) | 1443, 1576, 3631 |
| Eco47I | GGWCC | 4 cut(s) | 1513, 2000, 3004, 4459 |
| Eco57I | CTGAAG | 2 cut(s) | 121, 155 |
| Eco72I | CACGTG | 2 cut(s) | 2435, 2714 |
| Eco91I | GGTNACC | 2 cut(s) | 1332, 1817 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 795 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1513 |
| EcoO65I | GGTNACC | 2 cut(s) | 1332, 1817 |
| EcoRI | GAATTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 3 cut(s) | 94, 3098, 3397 |
| EcoRV | GATATC | 3 cut(s) | 1443, 1576, 3631 |
| EcoT14I | CCWWGG | 2 cut(s) | 3787, 4221 |
| EcoT22I | ATGCAT | 1 cut(s) | 1320 |
| ErhI | CCWWGG | 2 cut(s) | 3787, 4221 |
| Esp3I | CGTCTC | 1 cut(s) | 3837 |
| FaqI | GGGAC | 6 cut(s) | 491, 1384, 1603, 2560, 2990, 4041 |
| FbaI | TGATCA | 6 cut(s) | 13, 88, 1267, 1870, 2272, 4419 |
| FblI | GTMKAC | 1 cut(s) | 3892 |
| GlaI | GCGC | 4 cut(s) | 805, 965, 3081, 3993 |
| GsaI | CCCAGC | 1 cut(s) | 47 |
| GsuI | CTGGAG | 1 cut(s) | 3121 |
| HapII | CCGG | 9 cut(s) | 230, 716, 1032, 1167, 1839, 3173, 3263, 3780, 4025 |
| HgaI | GACGC | 5 cut(s) | 2019, 2766, 2891, 4030, 4326 |
| HhaI | GCGC | 4 cut(s) | 806, 966, 3082, 3994 |
| Hin1I | GRCGYC | 1 cut(s) | 4022 |
| Hin6I | GCGC | 4 cut(s) | 804, 964, 3080, 3992 |
| HinP1I | GCGC | 4 cut(s) | 804, 964, 3080, 3992 |
| HincII | GTYRAC | 2 cut(s) | 1000, 1804 |
| HindII | GTYRAC | 2 cut(s) | 1000, 1804 |
| HindIII | AAGCTT | 1 cut(s) | 3465 |
| HpaII | CCGG | 9 cut(s) | 230, 716, 1032, 1167, 1839, 3173, 3263, 3780, 4025 |
| Hpy99I | CGWCG | 2 cut(s) | 1955, 2907 |
| Hsp92I | GRCGYC | 1 cut(s) | 4022 |
| HspAI | GCGC | 4 cut(s) | 804, 964, 3080, 3992 |
| Kpn2I | TCCGGA | 1 cut(s) | 229 |
| KroI | GCCGGC | 1 cut(s) | 715 |
| KroNI | GCCGGC | 1 cut(s) | 717 |
| Ksp22I | TGATCA | 6 cut(s) | 13, 88, 1267, 1870, 2272, 4419 |
| LguI | GCTCTTC | 2 cut(s) | 2136, 2886 |
| LmnI | GCTCC | 6 cut(s) | 609, 875, 2662, 3102, 3265, 3791 |
| MfeI | CAATTG | 3 cut(s) | 303, 1391, 1496 |
| MflI | RGATCY | 5 cut(s) | 431, 534, 628, 3040, 4414 |
| MhlI | GDGCHC | 7 cut(s) | 958, 1129, 1705, 2131, 2569, 2659, 4096 |
| MlsI | TGGCCA | 1 cut(s) | 3716 |
| MluNI | TGGCCA | 1 cut(s) | 3716 |
| MlyI | GAGTC | 6 cut(s) | 719, 1106, 2206, 2406, 2711, 3770 |
| MmeI | TCCRAC | 2 cut(s) | 897, 2831 |
| Mox20I | TGGCCA | 1 cut(s) | 3716 |
| Mph1103I | ATGCAT | 1 cut(s) | 1320 |
| MroI | TCCGGA | 1 cut(s) | 229 |
| MroNI | GCCGGC | 1 cut(s) | 715 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3647, 4572 |
| MscI | TGGCCA | 1 cut(s) | 3716 |
| MslI | CAYNNNNRTG | 5 cut(s) | 161, 623, 1240, 3683, 3710 |
| Msp20I | TGGCCA | 1 cut(s) | 3716 |
| MspA1I | CMGCKG | 2 cut(s) | 2774, 4457 |
| MspI | CCGG | 9 cut(s) | 230, 716, 1032, 1167, 1839, 3173, 3263, 3780, 4025 |
| MspR9I | CCNGG | 5 cut(s) | 96, 3100, 3173, 3399, 4026 |
| MunI | CAATTG | 3 cut(s) | 303, 1391, 1496 |
| Mva1269I | GAATGC | 1 cut(s) | 1010 |
| MvaI | CCWGG | 3 cut(s) | 96, 3100, 3399 |
| NaeI | GCCGGC | 1 cut(s) | 717 |
| NciI | CCSGG | 2 cut(s) | 3173, 4026 |
| NcoI | CCATGG | 1 cut(s) | 4221 |
| NgoMIV | GCCGGC | 1 cut(s) | 715 |
| NlaIV | GGNNCC | 5 cut(s) | 251, 630, 1261, 3006, 3104 |
| NmeAIII | GCCGAG | 3 cut(s) | 674, 1043, 1073 |
| NsiI | ATGCAT | 1 cut(s) | 1320 |
| NspI | RCATGY | 4 cut(s) | 951, 2017, 2061, 2634 |
| NspV | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| PagI | TCATGA | 4 cut(s) | 564, 1899, 2449, 4354 |
| PaqCI | CACCTGC | 2 cut(s) | 912, 3127 |
| PciI | ACATGT | 3 cut(s) | 947, 2057, 2630 |
| PciSI | GCTCTTC | 2 cut(s) | 2136, 2886 |
| PctI | GAATGC | 1 cut(s) | 1010 |
| PdiI | GCCGGC | 1 cut(s) | 717 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3647, 4572 |
| PfeI | GAWTC | 8 cut(s) | 103, 226, 488, 1466, 2495, 2789, 3421, 3863 |
| PinAI | ACCGGT | 1 cut(s) | 1838 |
| Ple19I | CGATCG | 1 cut(s) | 868 |
| PleI | GAGTC | 6 cut(s) | 719, 1105, 2206, 2405, 2711, 3770 |
| PmaCI | CACGTG | 2 cut(s) | 2435, 2714 |
| PmlI | CACGTG | 2 cut(s) | 2435, 2714 |
| PpsI | GAGTC | 6 cut(s) | 719, 1105, 2206, 2405, 2711, 3770 |
| Ppu21I | YACGTR | 4 cut(s) | 2435, 2714, 2975, 4070 |
| PpuMI | RGGWCCY | 1 cut(s) | 1513 |
| PscI | ACATGT | 3 cut(s) | 947, 2057, 2630 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1998, 3002 |
| PshBI | ATTAAT | 3 cut(s) | 1793, 2199, 2526 |
| Psp1406I | AACGTT | 1 cut(s) | 2158 |
| Psp5II | RGGWCCY | 1 cut(s) | 1513 |
| Psp6I | CCWGG | 3 cut(s) | 94, 3098, 3397 |
| PspCI | CACGTG | 2 cut(s) | 2435, 2714 |
| PspEI | GGTNACC | 2 cut(s) | 1332, 1817 |
| PspFI | CCCAGC | 1 cut(s) | 43 |
| PspGI | CCWGG | 3 cut(s) | 94, 3098, 3397 |
| PspN4I | GGNNCC | 5 cut(s) | 251, 630, 1261, 3006, 3104 |
| PspPI | GGNCC | 5 cut(s) | 1513, 1543, 2000, 3004, 4459 |
| PspPPI | RGGWCCY | 1 cut(s) | 1513 |
| PsuI | RGATCY | 5 cut(s) | 431, 534, 628, 3040, 4414 |
| PvuI | CGATCG | 1 cut(s) | 868 |
| RgaI | GCGATCGC | 1 cut(s) | 868 |
| RseI | CAYNNNNRTG | 5 cut(s) | 161, 623, 1240, 3683, 3710 |
| SapI | GCTCTTC | 2 cut(s) | 2136, 2886 |
| Sau96I | GGNCC | 5 cut(s) | 1513, 1543, 2000, 3004, 4459 |
| SchI | GAGTC | 6 cut(s) | 719, 1106, 2206, 2406, 2711, 3770 |
| ScrFI | CCNGG | 5 cut(s) | 96, 3100, 3173, 3399, 4026 |
| SduI | GDGCHC | 7 cut(s) | 958, 1129, 1705, 2131, 2569, 2659, 4096 |
| SfaAI | GCGATCGC | 1 cut(s) | 868 |
| SfcI | CTRYAG | 3 cut(s) | 925, 2392, 3813 |
| SfuI | TTCGAA | 3 cut(s) | 2241, 3553, 4438 |
| SgfI | GCGATCGC | 1 cut(s) | 868 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1838 |
| SinI | GGWCC | 4 cut(s) | 1513, 2000, 3004, 4459 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 161, 623, 1240, 3683, 3710 |
| SmlI | CTYRAG | 6 cut(s) | 350, 1042, 1161, 1400, 2376, 3503 |
| SmoI | CTYRAG | 6 cut(s) | 350, 1042, 1161, 1400, 2376, 3503 |
| SpeI | ACTAGT | 1 cut(s) | 121 |
| SsiI | CCGC | 6 cut(s) | 1206, 2772, 3935, 3977, 4202, 4457 |
| SspI | AATATT | 4 cut(s) | 262, 400, 1850, 3695 |
| StyD4I | CCNGG | 5 cut(s) | 94, 3098, 3171, 3397, 4024 |
| StyI | CCWWGG | 2 cut(s) | 3787, 4221 |
| TatI | WGTACW | 6 cut(s) | 422, 1563, 3153, 3165, 3577, 3819 |
| TauI | GCSGC | 1 cut(s) | 1208 |
| TfiI | GAWTC | 8 cut(s) | 103, 226, 488, 1466, 2495, 2789, 3421, 3863 |
| TscAI | CASTG | 6 cut(s) | 329, 1261, 1270, 1603, 3580, 3645 |
| TspGWI | ACGGA | 2 cut(s) | 3275, 3861 |
| TspRI | CASTG | 6 cut(s) | 329, 1261, 1270, 1603, 3580, 3645 |
| VneI | GTGCAC | 3 cut(s) | 1125, 1701, 2565 |
| VpaK11BI | GGWCC | 4 cut(s) | 1513, 2000, 3004, 4459 |
| VspI | ATTAAT | 3 cut(s) | 1793, 2199, 2526 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 795 |
| XapI | RAATTY | 5 cut(s) | 55, 406, 593, 1289, 2006 |
| XbaI | TCTAGA | 2 cut(s) | 3982, 4190 |
| XceI | RCATGY | 4 cut(s) | 951, 2017, 2061, 2634 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2160 |
| XmiI | GTMKAC | 1 cut(s) | 3892 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3647, 4572 |
| Zsp2I | ATGCAT | 1 cut(s) | 1320 |