FvH4_6g20106

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000071
Physical Location & Seq
Forward (+)
13567630 .. 13570029
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20106.t3

Sequence Viewer

Length: 1206 bp
ATGAGACATGAAATTGATGCGCTGCAAGCAAACAAAACCTGGAGCCTTGTATCACCACCTGCTCACAAACATCCTATTGGATGTAAATGGGTGTACAAGATCAAGTACAACCCGGATGGCAGTATAGAACGATATAAAGCCCGTCTTGTTGCCAAAGGATACAGTCAGGTGGGAGGAATTGATTATCGAGAAACTTTTGCTCCAGTTGCTAAGCTCACCACAGTCCGTGTCCTACTCAGTTTGTCATCTTTGCGTGGTTGGCATCTTCACCAACTTGATGTAAGTAATGCCTTCTTGAATGGTGATCTGTCTGAGGATGTTTATATGCAGCTTCCTCCTGGTTTTGGAGGAAAGGGGGAGAATCGGGTATGCAAGCTACACAAATCTTTATATGGCCTCAAACAAGCTTTAAGACAATGGTTCATCAAGTTGTCTAATGAACTCAAGAGGGCTGGCTTTCATCAAAGCTGGTCTGATTACTCCCTATTTGTTCGAAACTGCAAAGAGACATTCACTGTACTTTTAGTGTATGTCGATGATATTATCTTGGCAGGAAACAATCTTGAAGATATCAATGCAGTGAAGTGCTTCCTATCCAGCAAGTTCAAGTTAAGAGACATGGGAGTGTTGAAATATTTTCTTGGCATAGAAGTGGCCAGATCAAAGAAAGGTATTGTGTTAAGCCAGCGCAAGTACGCATTGGAGATATTGGAGGACTCCGGTTTCCTTGGAGCAAGACCCACAAAGTTTCCTGTAGAGTACAACATGGCTTTGACACAAAGAGACGGAGAGTTACTTACCGATCCATCTCAATATCGAAGACTGGTAGGTAGACTTATTTATCTCACCATTACAAGACCCGACCTTGTTTATGCGGTACACATCCTTTCTCAATTCATGGATAAGCCAAGAATACCGCATCTAGAAGCAGCGCACAAGGTGTTACGTTATCTAAAGCAGACGCCGGGACAAGGTTTGCTATTGCCATCTAAAGGTACACTTCAATTACGTGCCTTTTGTGATGCAGATTGGGCACGTTGTAAAGACACTAGAAGGTCATTACTGGTTATTGCATTTTTATCGGTAATTCACCTATCTCTTGGAAAACAAAGAAGCAAGGAACAATATCTAGATCCAGTGCGGAAGCAGAGTATCGTTCCATGGCTTCTACTTGTTGTGAGATTACTTGGTTGCAGAATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

402

Amino Acids

45.88

Weight (kDa)

9.76

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 253 2.6e-74 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 832
AciI CCGC 3 cut(s) 875, 917, 1141
AclWI GGATC 2 cut(s) 797, 1127
AcoI YGGCCR 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 962
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 7 cut(s) 95, 107, 519, 695, 761, 879, 997
AfiI CCNNNNNNNGG 3 cut(s) 344, 971, 992
AgsI TTSAA 5 cut(s) 298, 566, 607, 631, 1004
AjnI CCWGG 2 cut(s) 38, 337
AluBI AGCT 5 cut(s) 214, 331, 376, 407, 468
AluI AGCT 5 cut(s) 214, 331, 376, 407, 468
Alw26I GTCTC 3 cut(s) 500, 609, 777
AlwI GGATC 2 cut(s) 797, 1127
AoxI GGCC 2 cut(s) 394, 654
ApeKI GCWGC 3 cut(s) 22, 328, 929
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 3 cut(s) 22, 690, 934
AsuC2I CCSGG 2 cut(s) 113, 966
AsuHPI GGTGA 6 cut(s) 45, 208, 260, 314, 838, 1082
AsuII TTCGAA 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 1036
BalI TGGCCA 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 826
BbvI GCAGC 3 cut(s) 9, 340, 941
BccI CCATC 3 cut(s) 110, 814, 994
BcgI CGANNNNNNTGC 2 cut(s) 1062, 1096
BciT130I CCWGG 2 cut(s) 40, 339
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 2 cut(s) 113, 966
BcoDI GTCTC 3 cut(s) 500, 609, 777
BfaI CTAG 3 cut(s) 923, 1050, 1130
BfmI CTRYAG 1 cut(s) 753
BfuAI ACCTGC 1 cut(s) 67
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 3 cut(s) 23, 329, 930
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 3 cut(s) 24, 330, 931
Bme1390I CCNGG 4 cut(s) 40, 113, 339, 966
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 4 cut(s) 40, 113, 339, 966
BmsI GCATC 4 cut(s) 7, 271, 928, 1012
BpiI GAAGAC 1 cut(s) 826
BpmI CTGGAG 2 cut(s) 61, 186
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 113, 966
BsaAI YACGTR 1 cut(s) 1010
BsaHI GRCGYC 1 cut(s) 962
BsaJI CCNNGG 2 cut(s) 727, 1160
BsaWI WCCGGW 1 cut(s) 719
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 971, 992
Bse1I ACTGG 4 cut(s) 203, 828, 1068, 1136
BseBI CCWGG 2 cut(s) 40, 339
BseDI CCNNGG 2 cut(s) 727, 1160
BseGI GGATG 5 cut(s) 70, 86, 121, 322, 882
BseLI CCNNNNNNNGG 3 cut(s) 344, 971, 992
BseMII CTCAG 2 cut(s) 250, 303
BseNI ACTGG 4 cut(s) 203, 828, 1068, 1136
BseSI GKGCMC 1 cut(s) 1036
BseXI GCAGC 3 cut(s) 9, 340, 941
BshFI GGCC 2 cut(s) 396, 656
BsiSI CCGG 3 cut(s) 113, 720, 965
BslFI GGGAC 1 cut(s) 981
BslI CCNNNNNNNGG 3 cut(s) 344, 971, 992
BsmAI GTCTC 3 cut(s) 500, 609, 777
BsmBI CGTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 981
BsnI GGCC 2 cut(s) 396, 656
Bsp119I TTCGAA 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 1036
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 5 cut(s) 99, 304, 659, 802, 1132
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 1160
BspACI CCGC 3 cut(s) 875, 917, 1141
BspANI GGCC 2 cut(s) 396, 656
BspCNI CTCAG 2 cut(s) 249, 304
BspLI GGNNCC 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 2 cut(s) 797, 1127
BspT104I TTCGAA 1 cut(s) 493
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 4 cut(s) 203, 828, 1068, 1136
BssECI CCNNGG 2 cut(s) 727, 1160
BssMI GATC 5 cut(s) 99, 304, 659, 802, 1132
BssNI GRCGYC 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 727, 1160
Bst2UI CCWGG 2 cut(s) 40, 339
Bst4CI ACNGT 3 cut(s) 164, 223, 517
BstACI GRCGYC 1 cut(s) 962
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 1010
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 4 cut(s) 27, 374, 454, 686
BstDEI CTNAG 3 cut(s) 210, 236, 312
BstDSI CCRYGG 1 cut(s) 1160
BstF5I GGATG 5 cut(s) 70, 86, 121, 322, 882
BstHHI GCGC 3 cut(s) 22, 690, 934
BstKTI GATC 5 cut(s) 102, 307, 662, 805, 1135
BstMAI GTCTC 3 cut(s) 500, 609, 777
BstMBI GATC 5 cut(s) 99, 304, 659, 802, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 26, 206, 259, 1031
BstNI CCWGG 2 cut(s) 40, 339
BstSCI CCNGG 4 cut(s) 38, 111, 337, 964
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 1036
BstV1I GCAGC 3 cut(s) 9, 340, 941
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 1 cut(s) 1132
BstYI RGATCY 1 cut(s) 1132
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 396, 656
BtgI CCRYGG 1 cut(s) 1160
BtsCI GGATG 5 cut(s) 70, 86, 121, 322, 882
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 513, 585, 1143
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 4 cut(s) 27, 374, 454, 686
CfoI GCGC 3 cut(s) 22, 690, 934
CseI GACGC 1 cut(s) 970
Csp6I GTAC 7 cut(s) 94, 106, 518, 694, 760, 878, 996
CviAII CATG 5 cut(s) 8, 619, 766, 898, 1161
CviQI GTAC 7 cut(s) 94, 106, 518, 694, 760, 878, 996
DdeI CTNAG 3 cut(s) 210, 236, 312
DpnI GATC 5 cut(s) 101, 306, 661, 804, 1134
DpnII GATC 5 cut(s) 99, 304, 659, 802, 1132
DraIII CACNNNGTG 1 cut(s) 940
EaeI YGGCCR 1 cut(s) 654
Eco130I CCWWGG 2 cut(s) 727, 1160
Eco32I GATATC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 38, 337
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 727, 1160
ErhI CCWWGG 2 cut(s) 727, 1160
Esp3I CGTCTC 1 cut(s) 777
FaeI CATG 5 cut(s) 11, 622, 769, 901, 1164
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 984, 1016
FaqI GGGAC 1 cut(s) 981
FatI CATG 5 cut(s) 7, 618, 765, 897, 1160
FblI GTMKAC 1 cut(s) 832
Fnu4HI GCNGC 3 cut(s) 23, 329, 930
FokI GGATG 5 cut(s) 57, 93, 128, 329, 869
Fsp4HI GCNGC 3 cut(s) 23, 329, 930
FspBI CTAG 3 cut(s) 923, 1050, 1130
GlaI GCGC 3 cut(s) 21, 689, 933
GluI GCNGC 3 cut(s) 23, 329, 930
GsuI CTGGAG 2 cut(s) 61, 186
HaeIII GGCC 2 cut(s) 396, 656
HapII CCGG 3 cut(s) 113, 720, 965
HgaI GACGC 1 cut(s) 970
HhaI GCGC 3 cut(s) 22, 690, 934
Hin1I GRCGYC 1 cut(s) 962
Hin1II CATG 5 cut(s) 11, 622, 769, 901, 1164
Hin6I GCGC 3 cut(s) 20, 688, 932
HinP1I GCGC 3 cut(s) 20, 688, 932
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 2 cut(s) 361, 716
HpaII CCGG 3 cut(s) 113, 720, 965
HphI GGTGA 6 cut(s) 45, 208, 260, 314, 838, 1082
Hpy166II GTNNAC 4 cut(s) 94, 833, 880, 998
Hpy188I TCNGA 2 cut(s) 313, 475
Hpy188III TCNNGA 6 cut(s) 188, 295, 445, 563, 923, 1130
Hpy8I GTNNAC 4 cut(s) 94, 833, 880, 998
HpyAV CCTTC 2 cut(s) 301, 1047
HpyCH4III ACNGT 3 cut(s) 164, 223, 517
HpyCH4IV ACGT 3 cut(s) 946, 1009, 1036
HpyCH4V TGCA 8 cut(s) 25, 328, 372, 501, 578, 1025, 1073, 1194
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 206, 259, 1031
HpyF3I CTNAG 3 cut(s) 210, 236, 312
HpySE526I ACGT 3 cut(s) 946, 1009, 1036
Hsp92I GRCGYC 1 cut(s) 962
Hsp92II CATG 5 cut(s) 11, 622, 769, 901, 1164
HspAI GCGC 3 cut(s) 20, 688, 932
Kzo9I GATC 5 cut(s) 99, 304, 659, 802, 1132
LmnI GCTCC 3 cut(s) 42, 205, 731
Lsp1109I GCAGC 3 cut(s) 9, 340, 941
LweI GCATC 4 cut(s) 7, 271, 928, 1012
MaeI CTAG 3 cut(s) 923, 1050, 1130
MaeII ACGT 3 cut(s) 946, 1009, 1036
MaeIII GTNAC 2 cut(s) 792, 942
MalI GATC 5 cut(s) 101, 306, 661, 804, 1134
MboI GATC 5 cut(s) 99, 304, 659, 802, 1132
MboII GAAGA 3 cut(s) 257, 578, 831
MflI RGATCY 1 cut(s) 1132
MhlI GDGCHC 1 cut(s) 1036
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 5 cut(s) 12, 177, 893, 1004, 1086
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 7 cut(s) 167, 307, 341, 345, 407, 441, 706
Mox20I TGGCCA 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 587
MscI TGGCCA 1 cut(s) 656
MseI TTAA 3 cut(s) 410, 611, 680
MslI CAYNNNNRTG 2 cut(s) 623, 650
Msp20I TGGCCA 1 cut(s) 656
MspI CCGG 3 cut(s) 113, 720, 965
MspR9I CCNGG 4 cut(s) 40, 113, 339, 966
MvaI CCWGG 2 cut(s) 40, 339
MwoI GCNNNNNNNGC 4 cut(s) 26, 206, 259, 1031
NciI CCSGG 2 cut(s) 113, 966
NcoI CCATGG 1 cut(s) 1160
NdeII GATC 5 cut(s) 99, 304, 659, 802, 1132
NlaIII CATG 5 cut(s) 11, 622, 769, 901, 1164
NlaIV GGNNCC 1 cut(s) 44
NspV TTCGAA 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 3 cut(s) 24, 330, 931
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
Ppu21I YACGTR 1 cut(s) 1010
Psp6I CCWGG 2 cut(s) 38, 337
PspGI CCWGG 2 cut(s) 38, 337
PspN4I GGNNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 1132
RsaI GTAC 7 cut(s) 95, 107, 519, 695, 761, 879, 997
RsaNI GTAC 7 cut(s) 94, 106, 518, 694, 760, 878, 996
RseI CAYNNNNRTG 2 cut(s) 623, 650
SaqAI TTAA 3 cut(s) 410, 611, 680
SatI GCNGC 3 cut(s) 23, 329, 930
Sau3AI GATC 5 cut(s) 99, 304, 659, 802, 1132
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 4 cut(s) 40, 113, 339, 966
SduI GDGCHC 1 cut(s) 1036
SfaNI GCATC 4 cut(s) 7, 271, 928, 1012
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 623, 650
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 12, 177, 893, 1004, 1086
SsiI CCGC 3 cut(s) 875, 917, 1141
SspI AATATT 1 cut(s) 635
SspMI CTAG 3 cut(s) 923, 1050, 1130
StyD4I CCNGG 4 cut(s) 38, 111, 337, 964
StyI CCWWGG 2 cut(s) 727, 1160
TaaI ACNGT 3 cut(s) 164, 223, 517
TaiI ACGT 3 cut(s) 949, 1012, 1039
TaqI TCGA 4 cut(s) 187, 493, 534, 817
TasI AATT 5 cut(s) 12, 177, 893, 1004, 1086
TatI WGTACW 4 cut(s) 93, 105, 517, 759
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 3 cut(s) 410, 611, 680
Tru9I TTAA 3 cut(s) 410, 611, 680
TscAI CASTG 3 cut(s) 520, 585, 1143
TseI GCWGC 3 cut(s) 22, 328, 929
TspDTI ATGAA 5 cut(s) 24, 412, 449, 453, 886
TspGWI ACGGA 2 cut(s) 215, 801
TspRI CASTG 3 cut(s) 520, 585, 1143
XbaI TCTAGA 2 cut(s) 922, 1129
XmiI GTMKAC 1 cut(s) 832
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 3 cut(s) 923, 1050, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.