Rroxscaffold_1G00053480

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000071
Physical Location & Seq
Reverse (-)
74428509 .. 74428859
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053480.1

Sequence Viewer

Length: 249 bp
ATGTCCTTTTTCTGTGACAATCAAGCTGCAATGCACATTGCTTCTAATCCAGTCTTTCATGAAAGAACCAAGCACATCGAGGTTGATTGCCATTATATTCGAGCTCAAGTTCAATCCAAAATTATTGATACTCATTACACTCGAAGTCATGACCAGCTGGCTGATATTTTCACCAAATCTCTCTCCACCGCTCGGTTCCATCGAATTCTTGGCAAGTTTGGCTCAATGAACCTCCTTGATCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_8 Exo_endo_phos

Protein Analysis

82

Amino Acids

9.46

Weight (kDa)

7.9

Isoelectric Point (pI)

63.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 4 cut(s) 26, 104, 157, 245
AluI AGCT 4 cut(s) 26, 104, 157, 245
Alw21I GWGCWC 1 cut(s) 106
AlwI GGATC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 163
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 207
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 2 cut(s) 36, 36
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 2 cut(s) 36, 36
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 189
BspHI TCATGA 2 cut(s) 58, 148
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 36, 36
BsrI ACTGG 1 cut(s) 50
BssMI GATC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 159
CciI TCATGA 2 cut(s) 58, 148
CviAII CATG 2 cut(s) 59, 149
CviJI RGCY 6 cut(s) 26, 104, 157, 161, 222, 245
CviKI_1 RGCY 6 cut(s) 26, 104, 157, 161, 222, 245
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 62, 152
FaiI YATR 3 cut(s) 60, 96, 150
FatI CATG 2 cut(s) 58, 148
Fnu4HI GCNGC 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 62, 152
HphI GGTGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 59, 149
HpyCH4V TGCA 2 cut(s) 29, 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 62, 152
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 63, 143, 167
Lsp1109I GCAGC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 191
MboI GATC 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 120, 204
MnlI CCTC 2 cut(s) 73, 242
MspA1I CMGCKG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 62, 152
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 14
PagI TCATGA 2 cut(s) 58, 148
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PkrI GCNGC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 157
SacI GAGCTC 1 cut(s) 106
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 106
SetI ASST 6 cut(s) 28, 84, 106, 159, 234, 247
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 2 cut(s) 120, 204
SsiI CCGC 1 cut(s) 189
SstI GAGCTC 1 cut(s) 106
TaqI TCGA 4 cut(s) 78, 100, 142, 202
TasI AATT 2 cut(s) 120, 204
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 47, 75, 242
XapI RAATTY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.