RchiOBHm_Chr7g0200281

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000071
Physical Location & Seq
Reverse (-)
18087661 .. 18093095
5435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17925

Sequence Viewer

Length: 2166 bp
ATGTTGTCTCTACTGCTGATGGTACTCCAACTCCAGTCACCAGATAAGCATCTTTTGGGACAGGCTAATCAGATCAACGGGGTAGAGAATGCGAAGGAAGCTGTATGGTTATGGCATTGCCATTTACGTCATCTATCTTTTCGTTATCTTAAGAAGCTACAACCTCAATTGTTTTCAGTTGTTAGTGATTTGGATTTCCACTGTGACATCTGTGAACTGGCCAAGAGTCACCGTATTTCGTATTCACCAAGTCTTAATAAAAGTCCTATTCCTTTTATGAAGATTCACTCCGATGTCGAGGGTCTTGTGAAAATTCCTTCTCTTTCTGGAGCTCGGTATTTCGTAACGTTTATTGATGATTGCACTCGCATGACATGGGTGTCATTACTAAAGAATAAGTGTGATGTATTTGGAATGTTTGCCGAATTTCACAAAATGGTGACAACTCAGTATCAACAATCCATCAGAGTGTTTCAGTCTGACAATGGTGGAGAGTTTGTGAATGGCCCTATGATTGAGTTTTGCCGGTCACATGGAATTCGTTATCAAACCTCCAATTCTTATACTCCTCAACAGAATGGTTTAGCAGAACGGAAGAACAGGCAGTTAATGGAAGTTGTTCGTGCTTCCTTGTTTGGCATGAATGTACCTCGGTCCTATTGGGGAGAAGCAGTAAAATCAGCAGCATATCTTATCAATCGTACTCCTTCACGGGTGATTGAGTTTCAGAATCCTCATCAGAAGCTTCATACACTTTTGACCATCCCTTCTATGCCTAATTTGGAGCCCCAAGTATTTGGGTGCATAGCCTATGTTCATATTCCCAAGCCTCAACGCAACAAGCTTGATCCTCGTGCCCGTAAGTGTATCTTTGTTGGTTATGCTAACTTCCAGAAGGGTTATCGATGTTATGGTCCCCTTACTGGCACTCTACATGTCTCTCTTGATGTTGCTTTTCGTGAATCCGAGCCTTATTACTCAGGGGGAGTTTCTCAGTCTTCCCTTCAGGGGGAGAGAGCATTGAAGGATCCAAAAGGGACAAAGGAGATGAATGAAGAATTGGAAGCTCTTCAAAAGAATGCAACATGGGAGCTAGTACCTATGCCGGTTGGAAAGAAGACTGTGGGATGTCGTTGGAATGCGTTTCTTAATGGGAATTTGGAGGAAGAAGTGTACATAGATGTGCCCCCAGGTGTTAAGAATTACCCAAGTGACGTTGGCAAGGTGTGTAAATTGAAGAAGTCTTTGTATGGCCTGAAGCAGTCTCCAAGAGCTTGGTTTGGAAGATTTTCAAAGTCCATGAAAGCCTTTGGGTACAGACAGAGCAATTCTGACCATACCTTGTTTATCAAATGCAAGAATGGTAAGATTACAGCTCTTATTGTGTATATTGATGACATGATTGTTACAGGGGATGATCCGAAAGAGATGAATGAATTGCAAAAGTATCTGTCAAAGGAGTTTGAAATGAAGGATTTGGGACAACTGAAGTATTTTCTGGGTATTGAAGTTGCAAGGTCTAAGAAGGGGATTTTGCTTTCACAAAGGAAGTATGTCATTGATTTACTTGCTGAAACAGGGATGCTGGACTGCAGACCAATGGAGACACCCATTGAGATGAATCACAGACTTGCTATTTATCCTGATCAAGTTCCAACTGATAAAGGGAGGTATCAACGTCTTGTAGGAAGGTTGATTTATCTTTCACATACTAGACCTGATATTGCTTATGCTCATATGGATGCAGTCTTTCGTATTTTGAAGTACTTGAAGATGGCGCCAGGTAAAGGGTTACTGTTTCAGAAAAAAGATGAATTGGAAGTTGTTGGGTACACAGATGCAGATGGGCTGGTGATAAAACTGACAAGCGTTCTACATCTGGGTACTTCACTTTTGTTGGAGGGAACCTTGTCACTTGGCGTAGCAAAAAGCAAAAAGTTGTTGCCAGATCAAGTGCAGAAGCTGAGTTCCGAGGTATGGCACACGGAGGTTGTGTTAAAGCTCTGCCATTGCCCATTGCAACATGATCGAAGTTTCTCGTGCCTGGTGAGGATTCCTGTAACGGAATTTGGTTGGCGTTGTTTCGGGGAAGCGAAGGAAACGGATCGAGTCTTTGAGCGGGTGGAGGAGGTCGAGAGATGGTGGAGCGGGATGGTCTTTGATTGA

Protein Analysis

721

Amino Acids

82.44

Weight (kDa)

9.07

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 24 - 76 5.2e-12 GAG-pre-integrase domain
rve PF00665 95 - 190 1.5e-09 Integrase core domain
SH3_retrovirus PF25597 268 - 325 6e-24 Retroviral polymerase SH3-like domain
RVT_2 PF07727 381 - 539 1e-40 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 1777
AccBSI CCGCTC 2 cut(s) 2119, 2148
AciI CCGC 2 cut(s) 2119, 2148
AclI AACGTT 1 cut(s) 347
AclWI GGATC 5 cut(s) 842, 1022, 1035, 1412, 2112
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 5 cut(s) 312, 425, 537, 1156, 2066
AcuI CTGAAG 3 cut(s) 989, 1277, 1508
AcyI GRCGYC 1 cut(s) 1778
AfaI GTAC 9 cut(s) 24, 648, 703, 1098, 1175, 1316, 1766, 1832, 1885
AfiI CCNNNNNNNGG 5 cut(s) 923, 1008, 1009, 1787, 1977
AflII CTTAAG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 8 cut(s) 1024, 1073, 1237, 1293, 1466, 1508, 1762, 1771
AjnI CCWGG 3 cut(s) 1189, 1780, 2043
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 4 cut(s) 12, 943, 1269, 1598
AlwI GGATC 5 cut(s) 842, 1022, 1035, 1412, 2112
AlwNI CAGNNNCTG 1 cut(s) 1963
AoxI GGCC 3 cut(s) 219, 505, 1252
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 5 cut(s) 312, 425, 537, 1156, 2066
Asp700I GAANNNNTTC 3 cut(s) 618, 1068, 1288
AspLEI GCGC 1 cut(s) 1780
AspS9I GGNCC 3 cut(s) 506, 654, 914
AsuHPI GGTGA 7 cut(s) 30, 221, 237, 451, 727, 1864, 2059
AvaII GGWCC 2 cut(s) 654, 914
BaeGI GKGCMC 2 cut(s) 859, 1188
BalI TGGCCA 1 cut(s) 221
BamHI GGATCC 1 cut(s) 1027
BanI GGYRCC 1 cut(s) 1777
BanII GRGCYC 2 cut(s) 334, 789
BauI CACGAG 2 cut(s) 852, 2038
BbsI GAAGAC 2 cut(s) 990, 1124
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 695
BccI CCATC 7 cut(s) 13, 470, 770, 1768, 1838, 2133, 2146
BcgI CGANNNNNNTGC 2 cut(s) 2009, 2043
BciT130I CCWGG 3 cut(s) 1191, 1782, 2045
BclI TGATCA 1 cut(s) 1645
BcoDI GTCTC 4 cut(s) 12, 943, 1269, 1598
BfaI CTAG 2 cut(s) 1094, 1713
BfmI CTRYAG 1 cut(s) 1591
BfoI RGCGCY 1 cut(s) 1781
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 684
BlsI GCNGC 1 cut(s) 685
BmcAI AGTACT 1 cut(s) 1766
Bme1390I CCNGG 3 cut(s) 1191, 1782, 2045
Bme18I GGWCC 2 cut(s) 654, 914
BmgT120I GGNCC 3 cut(s) 506, 654, 914
BmiI GGNNCC 5 cut(s) 786, 916, 1029, 1779, 1906
BmrFI CCNGG 3 cut(s) 1191, 1782, 2045
BmsI GCATC 4 cut(s) 58, 1572, 1732, 1828
BpiI GAAGAC 2 cut(s) 990, 1124
BpmI CTGGAG 2 cut(s) 17, 348
Bsa29I ATCGAT 1 cut(s) 904
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 1778
BsaJI CCNNGG 3 cut(s) 650, 1189, 1971
BsaXI ACNNNNNCTCC 8 cut(s) 15, 45, 483, 513, 657, 687, 1979, 2009
Bsc4I CCNNNNNNNGG 5 cut(s) 923, 1008, 1009, 1787, 1977
Bse118I RCCGGY 2 cut(s) 525, 1105
Bse1I ACTGG 3 cut(s) 34, 222, 928
Bse3DI GCAATG 3 cut(s) 115, 2008, 2015
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 3 cut(s) 1191, 1782, 2045
BseCI ATCGAT 1 cut(s) 904
BseDI CCNNGG 3 cut(s) 650, 1189, 1971
BseGI GGATG 6 cut(s) 762, 1133, 1420, 1587, 1747, 2157
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 5 cut(s) 923, 1008, 1009, 1787, 1977
BseMI GCAATG 3 cut(s) 115, 2008, 2015
BseMII CTCAG 4 cut(s) 461, 993, 1007, 1955
BseNI ACTGG 3 cut(s) 34, 222, 928
BseRI GAGGAG 2 cut(s) 558, 2141
BseSI GKGCMC 2 cut(s) 859, 1188
BseXI GCAGC 1 cut(s) 695
BsgI GTGCAG 1 cut(s) 1976
BshFI GGCC 3 cut(s) 221, 507, 1254
BshNI GGYRCC 1 cut(s) 1777
BshVI ATCGAT 1 cut(s) 904
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 526, 1106
BslFI GGGAC 4 cut(s) 72, 900, 1051, 1494
BslI CCNNNNNNNGG 5 cut(s) 923, 1008, 1009, 1787, 1977
BsmAI GTCTC 4 cut(s) 12, 943, 1269, 1598
BsmFI GGGAC 4 cut(s) 72, 900, 1051, 1494
BsmI GAATGC 3 cut(s) 94, 1084, 1144
BsnI GGCC 3 cut(s) 221, 507, 1254
Bsp1286I GDGCHC 4 cut(s) 334, 789, 859, 1188
Bsp1407I TGTACA 1 cut(s) 1173
Bsp143I GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
BspACI CCGC 2 cut(s) 2119, 2148
BspANI GGCC 3 cut(s) 221, 507, 1254
BspCNI CTCAG 4 cut(s) 460, 992, 1006, 1956
BspDI ATCGAT 1 cut(s) 904
BspLI GGNNCC 5 cut(s) 786, 916, 1029, 1779, 1906
BspMAI CTGCAG 1 cut(s) 1595
BspPI GGATC 5 cut(s) 842, 1022, 1035, 1412, 2112
BspQI GCTCTTC 1 cut(s) 1074
BspT107I GGYRCC 1 cut(s) 1777
BspTI CTTAAG 1 cut(s) 149
BsrBI CCGCTC 2 cut(s) 2119, 2148
BsrDI GCAATG 3 cut(s) 115, 2008, 2015
BsrFI RCCGGY 2 cut(s) 525, 1105
BsrGI TGTACA 1 cut(s) 1173
BsrI ACTGG 3 cut(s) 34, 222, 928
BssAI RCCGGY 2 cut(s) 525, 1105
BssECI CCNNGG 3 cut(s) 650, 1189, 1971
BssMI GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
BssNI GRCGYC 1 cut(s) 1778
BssSI CACGAG 2 cut(s) 852, 2038
Bst2BI CACGAG 2 cut(s) 852, 2038
Bst2UI CCWGG 3 cut(s) 1191, 1782, 2045
Bst4CI ACNGT 4 cut(s) 203, 233, 1123, 1797
Bst6I CTCTTC 1 cut(s) 1074
BstACI GRCGYC 1 cut(s) 1778
BstAFI CTTAAG 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 1173
BstDEI CTNAG 5 cut(s) 447, 979, 993, 1521, 1964
BstF5I GGATG 6 cut(s) 762, 1133, 1420, 1587, 1747, 2157
BstH2I RGCGCY 1 cut(s) 1781
BstHHI GCGC 1 cut(s) 1780
BstKTI GATC 8 cut(s) 75, 850, 1030, 1420, 1648, 1951, 2029, 2107
BstMAI GTCTC 4 cut(s) 12, 943, 1269, 1598
BstMBI GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 3 cut(s) 1191, 1782, 2045
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 3 cut(s) 1189, 1780, 2043
BstSFI CTRYAG 1 cut(s) 1591
BstSLI GKGCMC 2 cut(s) 859, 1188
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 2 cut(s) 990, 1124
BstX2I RGATCY 1 cut(s) 1027
BstXI CCANNNNNNTGG 2 cut(s) 797, 1275
BstYI RGATCY 1 cut(s) 1027
Bsu15I ATCGAT 1 cut(s) 904
BsuRI GGCC 3 cut(s) 221, 507, 1254
BsuTUI ATCGAT 1 cut(s) 904
BtsCI GGATG 6 cut(s) 762, 1133, 1420, 1587, 1747, 2157
BtsIMutI CAGTG 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 1963
CfoI GCGC 1 cut(s) 1780
Cfr10I RCCGGY 2 cut(s) 525, 1105
Cfr13I GGNCC 3 cut(s) 506, 654, 914
ClaI ATCGAT 1 cut(s) 904
Csp6I GTAC 9 cut(s) 23, 647, 702, 1097, 1174, 1315, 1765, 1831, 1884
CviAII CATG 9 cut(s) 370, 375, 533, 640, 935, 1086, 1300, 1399, 2024
CviQI GTAC 9 cut(s) 23, 647, 702, 1097, 1174, 1315, 1765, 1831, 1884
DdeI CTNAG 5 cut(s) 447, 979, 993, 1521, 1964
DinI GGCGCC 1 cut(s) 1779
DpnI GATC 8 cut(s) 74, 849, 1029, 1419, 1647, 1950, 2028, 2106
DpnII GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
DrdI GACNNNNNNGTC 1 cut(s) 379
DseDI GACNNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 334, 789
Eco47I GGWCC 2 cut(s) 654, 914
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 3 cut(s) 989, 1277, 1508
EcoICRI GAGCTC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 537
EcoRII CCWGG 3 cut(s) 1189, 1780, 2043
EcoT38I GRGCYC 2 cut(s) 334, 789
EgeI GGCGCC 1 cut(s) 1779
EheI GGCGCC 1 cut(s) 1779
FaeI CATG 9 cut(s) 373, 378, 536, 643, 938, 1089, 1303, 1402, 2027
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FaqI GGGAC 4 cut(s) 72, 900, 1051, 1494
FatI CATG 9 cut(s) 369, 374, 532, 639, 934, 1085, 1299, 1398, 2023
FauI CCCGC 2 cut(s) 2112, 2141
FauNDI CATATG 1 cut(s) 1737
FbaI TGATCA 1 cut(s) 1645
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 5 cut(s) 749, 1140, 1427, 1594, 1754
FriOI GRGCYC 2 cut(s) 334, 789
Fsp4HI GCNGC 1 cut(s) 684
FspBI CTAG 2 cut(s) 1094, 1713
GlaI GCGC 1 cut(s) 1779
GluI GCNGC 1 cut(s) 684
GsuI CTGGAG 2 cut(s) 17, 348
HaeII RGCGCY 1 cut(s) 1781
HaeIII GGCC 3 cut(s) 221, 507, 1254
HapII CCGG 2 cut(s) 526, 1106
HhaI GCGC 1 cut(s) 1780
Hin1I GRCGYC 1 cut(s) 1778
Hin1II CATG 9 cut(s) 373, 378, 536, 643, 938, 1089, 1303, 1402, 2027
Hin6I GCGC 1 cut(s) 1778
HinP1I GCGC 1 cut(s) 1778
HindIII AAGCTT 2 cut(s) 743, 842
HinfI GANTC 7 cut(s) 226, 283, 730, 962, 1621, 2053, 2109
HpaII CCGG 2 cut(s) 526, 1106
HphI GGTGA 7 cut(s) 30, 221, 237, 451, 727, 1864, 2059
Hpy166II GTNNAC 3 cut(s) 215, 1174, 1833
Hpy188III TCNNGA 6 cut(s) 327, 892, 944, 959, 1643, 2134
Hpy8I GTNNAC 3 cut(s) 215, 1174, 1833
HpyCH4III ACNGT 4 cut(s) 203, 233, 1123, 1797
HpyCH4IV ACGT 4 cut(s) 127, 347, 1215, 1678
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 5 cut(s) 447, 979, 993, 1521, 1964
HpySE526I ACGT 4 cut(s) 127, 347, 1215, 1678
Hsp92I GRCGYC 1 cut(s) 1778
Hsp92II CATG 9 cut(s) 373, 378, 536, 643, 938, 1089, 1303, 1402, 2027
HspAI GCGC 1 cut(s) 1778
KasI GGCGCC 1 cut(s) 1777
Ksp22I TGATCA 1 cut(s) 1645
Kzo9I GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 4 cut(s) 329, 784, 1090, 2145
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 4 cut(s) 58, 1572, 1732, 1828
MaeI CTAG 2 cut(s) 1094, 1713
MaeII ACGT 4 cut(s) 127, 347, 1215, 1678
MalI GATC 8 cut(s) 74, 849, 1029, 1419, 1647, 1950, 2028, 2106
MbiI CCGCTC 2 cut(s) 2119, 2148
MboI GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 4 cut(s) 334, 789, 859, 1188
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
Mly113I GGCGCC 1 cut(s) 1778
MlyI GAGTC 2 cut(s) 235, 2118
MmeI TCCRAC 5 cut(s) 52, 1090, 1115, 1679, 1878
Mox20I TGGCCA 1 cut(s) 221
MroXI GAANNNNTTC 3 cut(s) 618, 1068, 1288
MscI TGGCCA 1 cut(s) 221
MseI TTAA 6 cut(s) 150, 255, 608, 1149, 1197, 1997
MslI CAYNNNNRTG 6 cut(s) 291, 368, 467, 1181, 1616, 1740
Msp20I TGGCCA 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 2 cut(s) 526, 1106
MspR9I CCNGG 3 cut(s) 1191, 1782, 2045
MunI CAATTG 1 cut(s) 167
Mva1269I GAATGC 3 cut(s) 94, 1084, 1144
MvaI CCWGG 3 cut(s) 1191, 1782, 2045
MwoI GCNNNNNNNGC 1 cut(s) 98
NarI GGCGCC 1 cut(s) 1778
NdeI CATATG 1 cut(s) 1737
NdeII GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
NlaIII CATG 9 cut(s) 373, 378, 536, 643, 938, 1089, 1303, 1402, 2027
NlaIV GGNNCC 5 cut(s) 786, 916, 1029, 1779, 1906
NmuCI GTSAC 7 cut(s) 36, 203, 227, 439, 528, 1211, 1911
NspI RCATGY 1 cut(s) 938
PciI ACATGT 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 1074
PctI GAATGC 3 cut(s) 94, 1084, 1144
PdmI GAANNNNTTC 3 cut(s) 618, 1068, 1288
PfeI GAWTC 5 cut(s) 283, 730, 962, 1621, 2053
PkrI GCNGC 1 cut(s) 685
PleI GAGTC 2 cut(s) 234, 2117
PluTI GGCGCC 1 cut(s) 1781
PpsI GAGTC 2 cut(s) 234, 2117
PscI ACATGT 1 cut(s) 934
Psp124BI GAGCTC 1 cut(s) 334
Psp1406I AACGTT 1 cut(s) 347
Psp6I CCWGG 3 cut(s) 1189, 1780, 2043
PspGI CCWGG 3 cut(s) 1189, 1780, 2043
PspN4I GGNNCC 5 cut(s) 786, 916, 1029, 1779, 1906
PspPI GGNCC 3 cut(s) 506, 654, 914
PstI CTGCAG 1 cut(s) 1595
PstNI CAGNNNCTG 1 cut(s) 1963
PsuI RGATCY 1 cut(s) 1027
RsaI GTAC 9 cut(s) 24, 648, 703, 1098, 1175, 1316, 1766, 1832, 1885
RsaNI GTAC 9 cut(s) 23, 647, 702, 1097, 1174, 1315, 1765, 1831, 1884
RseI CAYNNNNRTG 6 cut(s) 291, 368, 467, 1181, 1616, 1740
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 6 cut(s) 150, 255, 608, 1149, 1197, 1997
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 8 cut(s) 72, 847, 1027, 1417, 1645, 1948, 2026, 2104
Sau96I GGNCC 3 cut(s) 506, 654, 914
ScaI AGTACT 1 cut(s) 1766
SchI GAGTC 2 cut(s) 235, 2118
ScrFI CCNGG 3 cut(s) 1191, 1782, 2045
SduI GDGCHC 4 cut(s) 334, 789, 859, 1188
SfaNI GCATC 4 cut(s) 58, 1572, 1732, 1828
SfcI CTRYAG 1 cut(s) 1591
SfoI GGCGCC 1 cut(s) 1779
SinI GGWCC 2 cut(s) 654, 914
SmiMI CAYNNNNRTG 6 cut(s) 291, 368, 467, 1181, 1616, 1740
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 2 cut(s) 2119, 2148
SspDI GGCGCC 1 cut(s) 1777
SspMI CTAG 2 cut(s) 1094, 1713
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 3 cut(s) 1189, 1780, 2043
TaaI ACNGT 4 cut(s) 203, 233, 1123, 1797
TaiI ACGT 4 cut(s) 130, 350, 1218, 1681
TaqI TCGA 5 cut(s) 297, 904, 2029, 2107, 2133
TaqII GACCGA 1 cut(s) 642
TatI WGTACW 2 cut(s) 1173, 1764
TfiI GAWTC 5 cut(s) 283, 730, 962, 1621, 2053
Tru1I TTAA 6 cut(s) 150, 255, 608, 1149, 1197, 1997
Tru9I TTAA 6 cut(s) 150, 255, 608, 1149, 1197, 1997
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 7 cut(s) 36, 203, 227, 439, 528, 1211, 1911
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 7 cut(s) 36, 203, 227, 439, 528, 1211, 1911
TspGWI ACGGA 4 cut(s) 607, 2000, 2078, 2117
TspRI CASTG 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 654, 914
XapI RAATTY 5 cut(s) 312, 425, 537, 1156, 2066
XceI RCATGY 1 cut(s) 938
XmnI GAANNNNTTC 3 cut(s) 618, 1068, 1288
XspI CTAG 2 cut(s) 1094, 1713
ZrmI AGTACT 1 cut(s) 1766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.