FvH4_7g04041

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000071
Physical Location & Seq
Forward (+)
4633138 .. 4635777
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04041.t1

Sequence Viewer

Length: 2640 bp
ATGAATGTACCTGTAGAATATTGGGGAGAAGTTGTGATATCTGCTGCCTACCTCATTAATCGTACCCCTTCTCGGGTTATTGAATGTGAAAACCCTCTACAACAGCTTCAGAATCTTCTCTCGGTTCCTTCGTTGCCTAACTTGGAGCCTCGTGTATTTGGATGTACAGTGTATGTTCAGATTCCAAAACAACAACGAAGTAAGCTTGATCCCCGTGCAAGGAAATGTATCTTTGTGGGTTATGCAGATTTTCAAAAGGGATATAGATGTTATGATCCTCTTACAGACACCATGCATGTATCTCTTGATGTTTCTTTTCGTGATTCTGAGCCTTATTACTTAGGGGGAGTATCCAAGTCTTCCCTTCAGGGGGAGAGAGGTTGTGAAGGGAATTCTAGACATTTATTTGAGTTTGAAGAATTTGAAGAGTTGGAAACTTTGGAGTCTAAATTCAGAATTGACAAAGCTACAAACAATAATAGTCATAGTCATGGAATTGATGCACATGACGCATATGTCACATGGGTGGCCGACATGAGGACCCCACCAGCTGAGCCACACATCTCTGAGCCAAGCCAAGGTTCTTCAGGCGGAGAAACACATGGAACCAGTGTTTGTGCTGAGCTGCGCATCCCTGAGCCGAGCCGACCAAGCCAAGCTGGGACCCCAACTGAAGAGGCAATTGCACGTGTCGACAGCGACACTGGTCTCGCTCTTCAGTTGGCCTCTGATTCTCCAACACGTGTCAACAACGACACTGGTTCTGCACTTGTCCCTGCAACAGTCTCGAGACCCACATATTTGACAGAAAATTGTCCTGAAAATGCTTCGTCAGATGTTTTCCCTTTCTCAACGCCATTAACCCAAGAATTTGCTACGAATGTCCCTCCTCAAGTATCTTTAGATTCAAACCAATTATATGAGGTAGATAATTTTGTAACTAGGAAATCACAGAGGGTCACCAAGGGTATTTCAAAGAAACAAGATGAACCAGACATCAAAGCCAAAACTAAATATCCTATAGCTAATTACATGTCTAACCATAGGTTGGTTGGGTCACATGCTCTTGTCATTAATCAATTATCCAGTGTTTCTATTCCTAGTACTGTACAGGATGTAATGACGGATCCCAAGTGGACTCAGGCGATGAACGAAGAATTAGAGGCATTACAGATAAACTCGACTTGGGATATTGTGCCTAAACCAGCTGGGAAGAAGACAGTTGGATGTCGTTGGGTATTCACCGTAAAATTAAAAGCAGATGGGAGCATTGACAGGTATAAAGCACGGTTGGTTGCCAAGGGATACACCCAGCGGTATGGCATTGATTATGAAGAAACGTTTGCGTCTGTAGCAAAGATCAACACTGTACGAATCTTGATTTCACTTGCAGCAACTAAAGATTGGCCTCTGCGACAATTTGATGTGAAGAATGCTTTCCTCAATGGAAACTTGGAGGAAGAGGTGTATATGGACATGCCTCCAGGAGTCAAAAGTAGACCGTGCGATGCTGGCAAGGTTTGTATGTTGAAGAAGTCCTTGTATGGTTTGAAGCAATCTCCTAGAGCTTGGTTTGGAAGATTCTCCAAATCAATGAAGACATTTGGTTATAGACAAAGAAACTCGGATCACACTTTGTTCATCAAGCGTAACCAGGGTAACATCACCACTCTGATTGTGTATGTTGATGATATGATTGTCACAGGGGATGACCCAAAGGAGATGGAGGCTCTACAAAAGTATCTTTCAAAGGAGTTTGAGATGAAGGACCTTGGACAGTTGAAGTATTTTCTCGGAATTGAAGTTGCAAGGTCAAAGAATGGAATTTCTTTATTCCAGCGAAAGTATGTACTTGACTTGTTAGCTAAAACTGGCATGTTTGACTGCAAGCCTGTTGAGACACCAATTGAGATGAATCACAACCTTGCCATCTATCCAAATCAAGTTCCAGCTGATAAACGAAGGTACCAACATCTAGTAGGGAGACTTATTTATCTTTCTCATACTAGACCTGATATTGCTTATGCTGTGAGTGTGGTTAGTCAATTTATGCATTGTCCCAACAAAGAGCATATAGATGCAGTGTATCGTATTCTGAAGTATCTTAAGATGGCACCTAGAAAAGGTTTTTTGTTTGAAAAGAAGATGGGTGAATTGGAAGTTGTAGGGTACACCGATGCTGATTGGGTTGGTGATAAGACAGACAGAAGATCTACATCTGGGTATTTTACATTTGTTGGAGGAAACCTTGTAACTTGGCGTAGTAAGAAACAGAAGGTTGCTGCCAGGTCAAGTGCTGAAGCAGAATTTCGAGGTATGGCACATGGAGTTTGTGAGATGTTATGGATTCGGAATATGTTGAAAGAATTGGGTCTTAAACTCAAACAACCTATGGCCTTGCATTGTGATAACACATCTGCAATTGAAATTGCTCATAATCCTGTTCAACATGACCGGACTAAACATGTGGAGGTAGATCGGCATTTTATCAAGGAAAACTTGGACAGGAAAATAATTTGTTTCCCTTTTGTGTATACAGAAGACCAATTGGCAGATGTTCTTACGAAAGGAGTATCAAGGAAAGTGTTTGACAACTCAGTTGGCAAGTTGGGCATGATTGATATCTATGCACCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

880

Amino Acids

99.28

Weight (kDa)

8.38

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 55 - 112 1.8e-23 Retroviral polymerase SH3-like domain
RVT_2 PF07727 393 - 637 9.8e-73 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
Acc16I TGCGCA 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 1965
AccB1I GGYRCC 2 cut(s) 1965, 2113
AccB7I CCANNNNNTGG 1 cut(s) 1048
AccI GTMKAC 3 cut(s) 693, 1498, 2534
AciI CCGC 2 cut(s) 591, 1315
AclI AACGTT 1 cut(s) 1340
AclWI GGATC 5 cut(s) 203, 269, 1121, 1134, 1635
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 6 cut(s) 391, 419, 449, 869, 1824, 2306
AcuI CTGAAG 7 cut(s) 92, 350, 570, 693, 701, 2117, 2319
AcvI CACGTG 2 cut(s) 689, 743
AfaI GTAC 9 cut(s) 9, 64, 166, 1105, 1110, 1371, 1851, 1967, 2171
AfiI CCNNNNNNNGG 9 cut(s) 72, 73, 219, 369, 370, 537, 578, 1048, 2123
AflII CTTAAG 1 cut(s) 2105
AflIII ACRYGT 5 cut(s) 688, 740, 742, 1032, 2464
AjnI CCWGG 3 cut(s) 1483, 1653, 2285
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AleI CACNNNNGTG 1 cut(s) 524
Alw26I GTCTC 5 cut(s) 713, 784, 790, 1892, 1978
AlwI GGATC 5 cut(s) 203, 269, 1121, 1134, 1635
Ama87I CYCGRG 2 cut(s) 72, 787
AoxI GGCC 4 cut(s) 528, 723, 1406, 2394
ApeKI GCWGC 4 cut(s) 44, 625, 1391, 2282
ApoI RAATTY 6 cut(s) 391, 419, 449, 869, 1824, 2306
AseI ATTAAT 2 cut(s) 57, 1074
Asp700I GAANNNNTTC 1 cut(s) 1436
Asp718I GGTACC 1 cut(s) 1965
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 3 cut(s) 540, 663, 1768
AsuHPI GGTGA 5 cut(s) 952, 1234, 1657, 2162, 2204
AvaI CYCGRG 2 cut(s) 72, 787
AvaII GGWCC 3 cut(s) 540, 663, 1768
BaeI ACNNNNGTAYC 4 cut(s) 1724, 1757, 1949, 1982
BamHI GGATCC 1 cut(s) 1126
BanI GGYRCC 2 cut(s) 1965, 2113
BauI CACGAG 1 cut(s) 150
BbrPI CACGTG 2 cut(s) 689, 743
BbsI GAAGAC 4 cut(s) 351, 1223, 1604, 2547
BbvI GCAGC 4 cut(s) 31, 612, 1403, 2269
BccI CCATC 5 cut(s) 1256, 1717, 1937, 2104, 2140
BcgI CGANNNNNNTGC 2 cut(s) 768, 802
BciT130I CCWGG 3 cut(s) 1485, 1655, 2287
BciVI GTATCC 2 cut(s) 361, 1298
BcoDI GTCTC 5 cut(s) 713, 784, 790, 1892, 1978
BfaI CTAG 7 cut(s) 396, 942, 1101, 1563, 1976, 2007, 2118
BfmI CTRYAG 3 cut(s) 12, 1020, 1350
BfrI CTTAAG 1 cut(s) 2105
BfuI GTATCC 2 cut(s) 361, 1298
BglII AGATCT 1 cut(s) 2210
BisI GCNGC 4 cut(s) 45, 626, 1392, 2283
BlpI GCTNAGC 2 cut(s) 552, 621
BlsI GCNGC 4 cut(s) 46, 627, 1393, 2284
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 3 cut(s) 1485, 1655, 2287
Bme18I GGWCC 3 cut(s) 540, 663, 1768
BmeT110I CYCGRG 2 cut(s) 72, 787
BmgT120I GGNCC 3 cut(s) 540, 663, 1768
BmiI GGNNCC 9 cut(s) 126, 147, 542, 607, 664, 665, 1128, 1967, 2115
BmrFI CCNGG 3 cut(s) 1485, 1655, 2287
BmsI GCATC 5 cut(s) 490, 639, 1498, 2068, 2167
BoxI GACNNNNGTC 1 cut(s) 705
BpiI GAAGAC 4 cut(s) 351, 1223, 1604, 2547
BpmI CTGGAG 1 cut(s) 1467
Bpu10I CCTNAGC 1 cut(s) 636
Bpu1102I GCTNAGC 2 cut(s) 552, 621
BpuEI CTTGAG 1 cut(s) 876
BsaAI YACGTR 2 cut(s) 689, 743
BsaBI GATNNNNATC 2 cut(s) 2215, 2621
BsaI GGTCTC 2 cut(s) 713, 784
BsaJI CCNNGG 5 cut(s) 577, 963, 1299, 1654, 1771
BsaWI WCCGGW 1 cut(s) 2454
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 9 cut(s) 72, 73, 219, 369, 370, 537, 578, 1048, 2123
Bse1I ACTGG 5 cut(s) 609, 709, 763, 1086, 1876
Bse8I GATNNNNATC 2 cut(s) 2215, 2621
BseBI CCWGG 3 cut(s) 1485, 1655, 2287
BseDI CCNNGG 5 cut(s) 577, 963, 1299, 1654, 1771
BseGI GGATG 5 cut(s) 167, 630, 1120, 1232, 1714
BseJI GATNNNNATC 2 cut(s) 2215, 2621
BseLI CCNNNNNNNGG 9 cut(s) 72, 73, 219, 369, 370, 537, 578, 1048, 2123
BseMII CTCAG 7 cut(s) 318, 543, 558, 612, 627, 1154, 2610
BseNI ACTGG 5 cut(s) 609, 709, 763, 1086, 1876
BseRI GAGGAG 1 cut(s) 879
BseXI GCAGC 4 cut(s) 31, 612, 1403, 2269
BseYI CCCAGC 3 cut(s) 659, 1208, 1311
BsgI GTGCAG 1 cut(s) 750
BshFI GGCC 4 cut(s) 530, 725, 1408, 2396
BshNI GGYRCC 2 cut(s) 1965, 2113
BsiHKCI CYCGRG 2 cut(s) 72, 787
BsiSI CCGG 1 cut(s) 2455
BslFI GGGAC 4 cut(s) 676, 758, 869, 2043
BslI CCNNNNNNNGG 9 cut(s) 72, 73, 219, 369, 370, 537, 578, 1048, 2123
BsmAI GTCTC 5 cut(s) 713, 784, 790, 1892, 1978
BsmFI GGGAC 4 cut(s) 676, 758, 869, 2043
BsmI GAATGC 1 cut(s) 1438
BsnI GGCC 4 cut(s) 530, 725, 1408, 2396
Bso31I GGTCTC 2 cut(s) 713, 784
BsoBI CYCGRG 2 cut(s) 72, 787
Bsp1407I TGTACA 2 cut(s) 164, 1108
Bsp143I GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
Bsp1720I GCTNAGC 2 cut(s) 552, 621
BspACI CCGC 2 cut(s) 591, 1315
BspANI GGCC 4 cut(s) 530, 725, 1408, 2396
BspCNI CTCAG 7 cut(s) 319, 544, 559, 613, 628, 1153, 2609
BspLI GGNNCC 9 cut(s) 126, 147, 542, 607, 664, 665, 1128, 1967, 2115
BspPI GGATC 5 cut(s) 203, 269, 1121, 1134, 1635
BspQI GCTCTTC 1 cut(s) 720
BspT107I GGYRCC 2 cut(s) 1965, 2113
BspTI CTTAAG 1 cut(s) 2105
BspTNI GGTCTC 2 cut(s) 713, 784
BsrGI TGTACA 2 cut(s) 164, 1108
BsrI ACTGG 5 cut(s) 609, 709, 763, 1086, 1876
BssECI CCNNGG 5 cut(s) 577, 963, 1299, 1654, 1771
BssMI GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
BssNAI GTATAC 1 cut(s) 2535
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 4 cut(s) 577, 963, 1299, 1771
Bst1107I GTATAC 1 cut(s) 2535
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 3 cut(s) 1485, 1655, 2287
Bst4CI ACNGT 9 cut(s) 169, 784, 1108, 1222, 1246, 1290, 1369, 1503, 1779
Bst6I CTCTTC 4 cut(s) 420, 669, 720, 1455
BstAFI CTTAAG 1 cut(s) 2105
BstAUI TGTACA 2 cut(s) 164, 1108
BstBAI YACGTR 2 cut(s) 689, 743
BstC8I GCNNGC 2 cut(s) 1513, 1889
BstDEI CTNAG 8 cut(s) 327, 340, 552, 567, 621, 636, 1140, 2596
BstEII GGTNACC 1 cut(s) 958
BstENI CCTNNNNNAGG 1 cut(s) 2121
BstF5I GGATG 5 cut(s) 167, 630, 1120, 1232, 1714
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 7 cut(s) 211, 277, 1129, 1362, 1630, 2213, 2479
BstMAI GTCTC 5 cut(s) 713, 784, 790, 1892, 1978
BstMBI GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
BstMWI GCNNNNNNNGC 5 cut(s) 509, 651, 1352, 1512, 2610
BstNI CCWGG 3 cut(s) 1485, 1655, 2287
BstNSI RCATGY 6 cut(s) 299, 1036, 1064, 1480, 1879, 2468
BstPAI GACNNNNGTC 1 cut(s) 705
BstPI GGTNACC 1 cut(s) 958
BstSCI CCNGG 3 cut(s) 1483, 1653, 2285
BstSFI CTRYAG 3 cut(s) 12, 1020, 1350
BstV1I GCAGC 4 cut(s) 31, 612, 1403, 2269
BstV2I GAAGAC 4 cut(s) 351, 1223, 1604, 2547
BstX2I RGATCY 2 cut(s) 1126, 2210
BstXI CCANNNNNNTGG 1 cut(s) 1319
BstYI RGATCY 2 cut(s) 1126, 2210
BstZ17I GTATAC 1 cut(s) 2535
BsuI GTATCC 2 cut(s) 361, 1298
BsuRI GGCC 4 cut(s) 530, 725, 1408, 2396
BtgZI GCGATG 2 cut(s) 1160, 1521
BtsCI GGATG 5 cut(s) 167, 630, 1120, 1232, 1714
BtsI GCAGTG 1 cut(s) 2088
BtsIMutI CAGTG 7 cut(s) 174, 616, 702, 756, 1093, 1365, 2088
Cac8I GCNNGC 2 cut(s) 1513, 1889
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 3 cut(s) 540, 663, 1768
CseI GACGC 2 cut(s) 518, 1335
Csp6I GTAC 9 cut(s) 8, 63, 165, 1104, 1109, 1370, 1850, 1966, 2170
CspCI CAANNNNNGTGG 2 cut(s) 1657, 1692
CviQI GTAC 9 cut(s) 8, 63, 165, 1104, 1109, 1370, 1850, 1966, 2170
DdeI CTNAG 8 cut(s) 327, 340, 552, 567, 621, 636, 1140, 2596
DpnI GATC 7 cut(s) 210, 276, 1128, 1361, 1629, 2212, 2478
DpnII GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
DrdI GACNNNNNNGTC 1 cut(s) 515
DseDI GACNNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 4 cut(s) 420, 669, 720, 1455
EarI CTCTTC 4 cut(s) 420, 669, 720, 1455
EciI GGCGGA 1 cut(s) 606
Eco130I CCWWGG 4 cut(s) 577, 963, 1299, 1771
Eco31I GGTCTC 2 cut(s) 713, 784
Eco32I GATATC 2 cut(s) 39, 2623
Eco47I GGWCC 3 cut(s) 540, 663, 1768
Eco57I CTGAAG 7 cut(s) 92, 350, 570, 693, 701, 2117, 2319
Eco72I CACGTG 2 cut(s) 689, 743
Eco88I CYCGRG 2 cut(s) 72, 787
Eco91I GGTNACC 1 cut(s) 958
EcoNI CCTNNNNNAGG 1 cut(s) 2121
EcoO109I RGGNCCY 3 cut(s) 540, 663, 1768
EcoO65I GGTNACC 1 cut(s) 958
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 1483, 1653, 2285
EcoRV GATATC 2 cut(s) 39, 2623
EcoT14I CCWWGG 4 cut(s) 577, 963, 1299, 1771
EcoT22I ATGCAT 2 cut(s) 297, 2055
ErhI CCWWGG 4 cut(s) 577, 963, 1299, 1771
FalI AAGNNNNNCTT 4 cut(s) 1523, 1555, 2483, 2515
FaqI GGGAC 4 cut(s) 676, 758, 869, 2043
FauNDI CATATG 1 cut(s) 514
FblI GTMKAC 3 cut(s) 693, 1498, 2534
Fnu4HI GCNGC 4 cut(s) 45, 626, 1392, 2283
FokI GGATG 5 cut(s) 174, 617, 1127, 1239, 1721
Fsp4HI GCNGC 4 cut(s) 45, 626, 1392, 2283
FspBI CTAG 7 cut(s) 396, 942, 1101, 1563, 1976, 2007, 2118
FspI TGCGCA 1 cut(s) 629
GlaI GCGC 1 cut(s) 629
GluI GCNGC 4 cut(s) 45, 626, 1392, 2283
GsaI CCCAGC 3 cut(s) 663, 1212, 1315
GsuI CTGGAG 1 cut(s) 1467
HaeIII GGCC 4 cut(s) 530, 725, 1408, 2396
HapII CCGG 1 cut(s) 2455
HgaI GACGC 2 cut(s) 518, 1335
HhaI GCGC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 2 cut(s) 694, 748
HindII GTYRAC 2 cut(s) 694, 748
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 1 cut(s) 2455
HphI GGTGA 5 cut(s) 952, 1234, 1657, 2162, 2204
Hpy166II GTNNAC 6 cut(s) 694, 748, 1137, 1499, 2172, 2535
Hpy188III TCNNGA 7 cut(s) 305, 320, 396, 787, 789, 818, 1378
Hpy8I GTNNAC 6 cut(s) 694, 748, 1137, 1499, 2172, 2535
HpyAV CCTTC 7 cut(s) 78, 138, 374, 380, 1759, 1956, 2269
HpyCH4III ACNGT 9 cut(s) 169, 784, 1108, 1222, 1246, 1290, 1369, 1503, 1779
HpyCH4IV ACGT 3 cut(s) 688, 742, 1340
HpyF10VI GCNNNNNNNGC 5 cut(s) 509, 651, 1352, 1512, 2610
HpyF3I CTNAG 8 cut(s) 327, 340, 552, 567, 621, 636, 1140, 2596
HpySE526I ACGT 3 cut(s) 688, 742, 1340
HspAI GCGC 1 cut(s) 628
KflI GGGWCCC 1 cut(s) 663
KpnI GGTACC 1 cut(s) 1969
Kzo9I GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 2 cut(s) 145, 1266
Lsp1109I GCAGC 4 cut(s) 31, 612, 1403, 2269
LweI GCATC 5 cut(s) 490, 639, 1498, 2068, 2167
MaeI CTAG 7 cut(s) 396, 942, 1101, 1563, 1976, 2007, 2118
MaeII ACGT 3 cut(s) 688, 742, 1340
MaeIII GTNAC 8 cut(s) 517, 937, 958, 1056, 1649, 1658, 1699, 2251
MalI GATC 7 cut(s) 210, 276, 1128, 1361, 1629, 2212, 2478
MboI GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
MfeI CAATTG 4 cut(s) 681, 1905, 2421, 2546
MflI RGATCY 2 cut(s) 1126, 2210
MlyI GAGTC 3 cut(s) 452, 1132, 1497
MmeI TCCRAC 4 cut(s) 411, 761, 1204, 2218
Mph1103I ATGCAT 2 cut(s) 297, 2055
MroXI GAANNNNTTC 1 cut(s) 1436
MseI TTAA 6 cut(s) 57, 860, 1074, 1253, 2106, 2376
MslI CAYNNNNRTG 3 cut(s) 489, 524, 2076
MspA1I CMGCKG 4 cut(s) 551, 1208, 1315, 1952
MspCI CTTAAG 1 cut(s) 2105
MspI CCGG 1 cut(s) 2455
MspR9I CCNGG 3 cut(s) 1485, 1655, 2287
MunI CAATTG 4 cut(s) 681, 1905, 2421, 2546
Mva1269I GAATGC 1 cut(s) 1438
MvaI CCWGG 3 cut(s) 1485, 1655, 2287
MwoI GCNNNNNNNGC 5 cut(s) 509, 651, 1352, 1512, 2610
NdeI CATATG 1 cut(s) 514
NdeII GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
NlaIV GGNNCC 9 cut(s) 126, 147, 542, 607, 664, 665, 1128, 1967, 2115
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 4 cut(s) 517, 958, 1056, 1699
NsbI TGCGCA 1 cut(s) 629
NsiI ATGCAT 2 cut(s) 297, 2055
NspI RCATGY 6 cut(s) 299, 1036, 1064, 1480, 1879, 2468
OliI CACNNNNGTG 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 787
PciI ACATGT 2 cut(s) 1032, 2464
PciSI GCTCTTC 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 1 cut(s) 1438
PdmI GAANNNNTTC 1 cut(s) 1436
PfeI GAWTC 9 cut(s) 112, 181, 323, 731, 905, 1374, 1581, 1915, 2347
PflMI CCANNNNNTGG 1 cut(s) 1048
PfoI TCCNGGA 1 cut(s) 1483
PkrI GCNGC 4 cut(s) 46, 627, 1393, 2284
PleI GAGTC 3 cut(s) 451, 1132, 1496
PmaCI CACGTG 2 cut(s) 689, 743
PmlI CACGTG 2 cut(s) 689, 743
PpsI GAGTC 3 cut(s) 451, 1132, 1496
Ppu21I YACGTR 2 cut(s) 689, 743
PpuMI RGGWCCY 3 cut(s) 540, 663, 1768
PscI ACATGT 2 cut(s) 1032, 2464
PshAI GACNNNNGTC 1 cut(s) 705
PshBI ATTAAT 2 cut(s) 57, 1074
Psp1406I AACGTT 1 cut(s) 1340
Psp5II RGGWCCY 3 cut(s) 540, 663, 1768
Psp6I CCWGG 3 cut(s) 1483, 1653, 2285
PspCI CACGTG 2 cut(s) 689, 743
PspEI GGTNACC 1 cut(s) 958
PspFI CCCAGC 3 cut(s) 659, 1208, 1311
PspGI CCWGG 3 cut(s) 1483, 1653, 2285
PspN4I GGNNCC 9 cut(s) 126, 147, 542, 607, 664, 665, 1128, 1967, 2115
PspPI GGNCC 3 cut(s) 540, 663, 1768
PspPPI RGGWCCY 3 cut(s) 540, 663, 1768
PsuI RGATCY 2 cut(s) 1126, 2210
PvuII CAGCTG 3 cut(s) 551, 1208, 1952
RsaI GTAC 9 cut(s) 9, 64, 166, 1105, 1110, 1371, 1851, 1967, 2171
RsaNI GTAC 9 cut(s) 8, 63, 165, 1104, 1109, 1370, 1850, 1966, 2170
RseI CAYNNNNRTG 3 cut(s) 489, 524, 2076
SalI GTCGAC 1 cut(s) 692
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 6 cut(s) 57, 860, 1074, 1253, 2106, 2376
SatI GCNGC 4 cut(s) 45, 626, 1392, 2283
Sau3AI GATC 7 cut(s) 208, 274, 1126, 1359, 1627, 2210, 2476
Sau96I GGNCC 3 cut(s) 540, 663, 1768
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 3 cut(s) 452, 1132, 1497
ScrFI CCNGG 3 cut(s) 1485, 1655, 2287
SfaNI GCATC 5 cut(s) 490, 639, 1498, 2068, 2167
SfcI CTRYAG 3 cut(s) 12, 1020, 1350
Sfr274I CTCGAG 1 cut(s) 787
SinI GGWCC 3 cut(s) 540, 663, 1768
SlaI CTCGAG 1 cut(s) 787
SmiMI CAYNNNNRTG 3 cut(s) 489, 524, 2076
SmlI CTYRAG 3 cut(s) 787, 891, 2105
SmoI CTYRAG 3 cut(s) 787, 891, 2105
SsiI CCGC 2 cut(s) 591, 1315
SspI AATATT 1 cut(s) 20
SspMI CTAG 7 cut(s) 396, 942, 1101, 1563, 1976, 2007, 2118
StyD4I CCNGG 3 cut(s) 1483, 1653, 2285
StyI CCWWGG 4 cut(s) 577, 963, 1299, 1771
TaaI ACNGT 9 cut(s) 169, 784, 1108, 1222, 1246, 1290, 1369, 1503, 1779
TaiI ACGT 3 cut(s) 691, 745, 1343
TaqI TCGA 4 cut(s) 693, 788, 1181, 2311
TatI WGTACW 4 cut(s) 164, 1103, 1108, 1849
TfiI GAWTC 9 cut(s) 112, 181, 323, 731, 905, 1374, 1581, 1915, 2347
Tru1I TTAA 6 cut(s) 57, 860, 1074, 1253, 2106, 2376
Tru9I TTAA 6 cut(s) 57, 860, 1074, 1253, 2106, 2376
TscAI CASTG 7 cut(s) 174, 616, 709, 763, 1093, 1372, 2088
TseFI GTSAC 4 cut(s) 517, 958, 1056, 1699
TseI GCWGC 4 cut(s) 44, 625, 1391, 2282
Tsp45I GTSAC 4 cut(s) 517, 958, 1056, 1699
TspDTI ATGAA 8 cut(s) 17, 1002, 1163, 1347, 1610, 1630, 1778, 1928
TspGWI ACGGA 1 cut(s) 1139
TspRI CASTG 7 cut(s) 174, 616, 709, 763, 1093, 1372, 2088
Van91I CCANNNNNTGG 1 cut(s) 1048
Vha464I CTTAAG 1 cut(s) 2105
VpaK11BI GGWCC 3 cut(s) 540, 663, 1768
VspI ATTAAT 2 cut(s) 57, 1074
XagI CCTNNNNNAGG 1 cut(s) 2121
XapI RAATTY 6 cut(s) 391, 419, 449, 869, 1824, 2306
XbaI TCTAGA 1 cut(s) 395
XceI RCATGY 6 cut(s) 299, 1036, 1064, 1480, 1879, 2468
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XhoI CTCGAG 1 cut(s) 787
XmiI GTMKAC 3 cut(s) 693, 1498, 2534
XmnI GAANNNNTTC 1 cut(s) 1436
XspI CTAG 7 cut(s) 396, 942, 1101, 1563, 1976, 2007, 2118
ZrmI AGTACT 1 cut(s) 1105
Zsp2I ATGCAT 2 cut(s) 297, 2055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.