Reverse transcriptase (RNA-dependent DNA polymerase)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 36 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 949 |
| AccI | GTMKAC | 2 cut(s) | 768, 996 |
| AciI | CCGC | 2 cut(s) | 420, 1127 |
| AclWI | GGATC | 3 cut(s) | 1472, 2194, 2207 |
| AcoI | YGGCCR | 2 cut(s) | 22, 1021 |
| AcuI | CTGAAG | 1 cut(s) | 1008 |
| AfaI | GTAC | 7 cut(s) | 457, 809, 1255, 1370, 1625, 1978, 2010 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 487, 949, 1019, 1030, 1646, 1667, 2157 |
| AgeI | ACCGGT | 2 cut(s) | 877, 2089 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 717 |
| AhlI | ACTAGT | 1 cut(s) | 1198 |
| AjiI | CACGTC | 2 cut(s) | 82, 714 |
| AjnI | CCWGG | 3 cut(s) | 460, 1012, 1639 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 622, 654, 1926, 1958 |
| AluBI | AGCT | 8 cut(s) | 695, 781, 920, 1062, 1303, 1352, 1675, 1918 |
| AluI | AGCT | 8 cut(s) | 695, 781, 920, 1062, 1303, 1352, 1675, 1918 |
| Alw21I | GWGCWC | 3 cut(s) | 533, 607, 1768 |
| Alw26I | GTCTC | 5 cut(s) | 72, 725, 1341, 1489, 1878 |
| Alw44I | GTGCAC | 1 cut(s) | 603 |
| AlwI | GGATC | 3 cut(s) | 1472, 2194, 2207 |
| Ama87I | CYCGRG | 1 cut(s) | 129 |
| AoxI | GGCC | 2 cut(s) | 22, 1021 |
| ApaLI | GTGCAC | 1 cut(s) | 603 |
| ApeKI | GCWGC | 5 cut(s) | 647, 920, 1604, 1937, 2023 |
| AsiGI | ACCGGT | 2 cut(s) | 877, 2089 |
| AspA2I | CCTAGG | 2 cut(s) | 215, 1315 |
| AspS9I | GGNCC | 1 cut(s) | 248 |
| AsuC2I | CCSGG | 2 cut(s) | 246, 863 |
| AsuHPI | GGTGA | 1 cut(s) | 357 |
| AsuII | TTCGAA | 1 cut(s) | 386 |
| AvaI | CYCGRG | 1 cut(s) | 129 |
| AvaII | GGWCC | 1 cut(s) | 248 |
| AvrII | CCTAGG | 2 cut(s) | 215, 1315 |
| BaeGI | GKGCMC | 1 cut(s) | 607 |
| BalI | TGGCCA | 1 cut(s) | 24 |
| BamHI | GGATCC | 1 cut(s) | 2199 |
| BbsI | GAAGAC | 3 cut(s) | 108, 1248, 1395 |
| Bbv12I | GWGCWC | 3 cut(s) | 533, 607, 1768 |
| BbvI | GCAGC | 5 cut(s) | 659, 907, 1591, 1949, 2035 |
| BccI | CCATC | 5 cut(s) | 376, 597, 785, 1172, 1831 |
| BceAI | ACGGC | 1 cut(s) | 833 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 161, 195, 1067, 1101 |
| BciT130I | CCWGG | 3 cut(s) | 462, 1014, 1641 |
| BciVI | GTATCC | 1 cut(s) | 24 |
| BclI | TGATCA | 4 cut(s) | 571, 1432, 2136, 2179 |
| BcnI | CCSGG | 2 cut(s) | 246, 863 |
| BcoDI | GTCTC | 5 cut(s) | 72, 725, 1341, 1489, 1878 |
| BcuI | ACTAGT | 1 cut(s) | 1198 |
| BfmI | CTRYAG | 5 cut(s) | 372, 423, 835, 1797, 1828 |
| BfuI | GTATCC | 1 cut(s) | 24 |
| BglII | AGATCT | 2 cut(s) | 979, 1291 |
| BisI | GCNGC | 5 cut(s) | 648, 921, 1605, 1938, 2024 |
| BlnI | CCTAGG | 2 cut(s) | 215, 1315 |
| BlsI | GCNGC | 5 cut(s) | 649, 922, 1606, 1939, 2025 |
| Bme1390I | CCNGG | 5 cut(s) | 246, 462, 863, 1014, 1641 |
| Bme18I | GGWCC | 1 cut(s) | 248 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 717 |
| BmeT110I | CYCGRG | 1 cut(s) | 129 |
| BmgBI | CACGTC | 2 cut(s) | 82, 714 |
| BmgT120I | GGNCC | 1 cut(s) | 248 |
| BmiI | GGNNCC | 2 cut(s) | 249, 2201 |
| BmrFI | CCNGG | 5 cut(s) | 246, 462, 863, 1014, 1641 |
| BmrI | ACTGGG | 2 cut(s) | 198, 1714 |
| BmuI | ACTGGG | 2 cut(s) | 198, 1714 |
| BpiI | GAAGAC | 3 cut(s) | 108, 1248, 1395 |
| Bpu14I | TTCGAA | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 4 cut(s) | 230, 1255, 1397, 2176 |
| BpuMI | CCSGG | 2 cut(s) | 246, 863 |
| Bsa29I | ATCGAT | 1 cut(s) | 1835 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1437, 2178 |
| BsaI | GGTCTC | 1 cut(s) | 1341 |
| BsaJI | CCNNGG | 4 cut(s) | 215, 928, 1315, 1583 |
| BsaWI | WCCGGW | 3 cut(s) | 877, 1534, 2089 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 442, 472 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 487, 949, 1019, 1030, 1646, 1667, 2157 |
| Bse118I | RCCGGY | 2 cut(s) | 877, 2089 |
| Bse1I | ACTGG | 6 cut(s) | 193, 1116, 1427, 1709, 1769, 1961 |
| Bse3DI | GCAATG | 1 cut(s) | 1097 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1437, 2178 |
| BseBI | CCWGG | 3 cut(s) | 462, 1014, 1641 |
| BseCI | ATCGAT | 1 cut(s) | 1835 |
| BseDI | CCNNGG | 4 cut(s) | 215, 928, 1315, 1583 |
| BseGI | GGATG | 6 cut(s) | 320, 400, 958, 1216, 1606, 1650 |
| BseJI | GATNNNNATC | 2 cut(s) | 1437, 2178 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 487, 949, 1019, 1030, 1646, 1667, 2157 |
| BseMI | GCAATG | 1 cut(s) | 1097 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseNI | ACTGG | 6 cut(s) | 193, 1116, 1427, 1709, 1769, 1961 |
| BseSI | GKGCMC | 1 cut(s) | 607 |
| BseXI | GCAGC | 5 cut(s) | 659, 907, 1591, 1949, 2035 |
| BsgI | GTGCAG | 1 cut(s) | 1590 |
| BshFI | GGCC | 2 cut(s) | 24, 1023 |
| BshTI | ACCGGT | 2 cut(s) | 877, 2089 |
| BshVI | ATCGAT | 1 cut(s) | 1835 |
| BsiHKAI | GWGCWC | 3 cut(s) | 533, 607, 1768 |
| BsiHKCI | CYCGRG | 1 cut(s) | 129 |
| BsiSI | CCGG | 5 cut(s) | 245, 862, 878, 1535, 2090 |
| BsiWI | CGTACG | 1 cut(s) | 1976 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 487, 949, 1019, 1030, 1646, 1667, 2157 |
| BsmAI | GTCTC | 5 cut(s) | 72, 725, 1341, 1489, 1878 |
| BsmBI | CGTCTC | 1 cut(s) | 72 |
| BsnI | GGCC | 2 cut(s) | 24, 1023 |
| Bso31I | GGTCTC | 1 cut(s) | 1341 |
| BsoBI | CYCGRG | 1 cut(s) | 129 |
| Bsp119I | TTCGAA | 1 cut(s) | 386 |
| Bsp1286I | GDGCHC | 3 cut(s) | 533, 607, 1768 |
| BspACI | CCGC | 2 cut(s) | 420, 1127 |
| BspANI | GGCC | 2 cut(s) | 24, 1023 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspDI | ATCGAT | 1 cut(s) | 1835 |
| BspHI | TCATGA | 1 cut(s) | 1969 |
| BspLI | GGNNCC | 2 cut(s) | 249, 2201 |
| BspPI | GGATC | 3 cut(s) | 1472, 2194, 2207 |
| BspT104I | TTCGAA | 1 cut(s) | 386 |
| BspTNI | GGTCTC | 1 cut(s) | 1341 |
| BsrDI | GCAATG | 1 cut(s) | 1097 |
| BsrFI | RCCGGY | 2 cut(s) | 877, 2089 |
| BsrI | ACTGG | 6 cut(s) | 193, 1116, 1427, 1709, 1769, 1961 |
| BssAI | RCCGGY | 2 cut(s) | 877, 2089 |
| BssECI | CCNNGG | 4 cut(s) | 215, 928, 1315, 1583 |
| BssNAI | GTATAC | 1 cut(s) | 769 |
| BssT1I | CCWWGG | 2 cut(s) | 215, 1315 |
| Bst1107I | GTATAC | 1 cut(s) | 769 |
| Bst2UI | CCWGG | 3 cut(s) | 462, 1014, 1641 |
| Bst6I | CTCTTC | 1 cut(s) | 306 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 881 |
| BstBI | TTCGAA | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 2 cut(s) | 290, 1080 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstDSI | CCRYGG | 1 cut(s) | 928 |
| BstF5I | GGATG | 6 cut(s) | 320, 400, 958, 1216, 1606, 1650 |
| BstMAI | GTCTC | 5 cut(s) | 72, 725, 1341, 1489, 1878 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 881, 1706, 1906, 1915 |
| BstNI | CCWGG | 3 cut(s) | 462, 1014, 1641 |
| BstNSI | RCATGY | 2 cut(s) | 416, 1003 |
| BstSCI | CCNGG | 5 cut(s) | 244, 460, 861, 1012, 1639 |
| BstSFI | CTRYAG | 5 cut(s) | 372, 423, 835, 1797, 1828 |
| BstSLI | GKGCMC | 1 cut(s) | 607 |
| BstV1I | GCAGC | 5 cut(s) | 659, 907, 1591, 1949, 2035 |
| BstV2I | GAAGAC | 3 cut(s) | 108, 1248, 1395 |
| BstX2I | RGATCY | 4 cut(s) | 979, 1291, 1477, 2199 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1776 |
| BstYI | RGATCY | 4 cut(s) | 979, 1291, 1477, 2199 |
| BstZ17I | GTATAC | 1 cut(s) | 769 |
| Bsu15I | ATCGAT | 1 cut(s) | 1835 |
| BsuI | GTATCC | 1 cut(s) | 24 |
| BsuRI | GGCC | 2 cut(s) | 24, 1023 |
| BsuTUI | ATCGAT | 1 cut(s) | 1835 |
| BtgI | CCRYGG | 1 cut(s) | 928 |
| BtrI | CACGTC | 2 cut(s) | 82, 714 |
| BtsCI | GGATG | 6 cut(s) | 320, 400, 958, 1216, 1606, 1650 |
| BtsIMutI | CAGTG | 5 cut(s) | 186, 381, 984, 1109, 1197 |
| Cac8I | GCNNGC | 2 cut(s) | 290, 1080 |
| CciI | TCATGA | 1 cut(s) | 1969 |
| Cfr10I | RCCGGY | 2 cut(s) | 877, 2089 |
| Cfr13I | GGNCC | 1 cut(s) | 248 |
| ClaI | ATCGAT | 1 cut(s) | 1835 |
| CsiI | ACCWGGT | 1 cut(s) | 1639 |
| Csp6I | GTAC | 7 cut(s) | 456, 808, 1254, 1369, 1624, 1977, 2009 |
| CspAI | ACCGGT | 2 cut(s) | 877, 2089 |
| CviQI | GTAC | 7 cut(s) | 456, 808, 1254, 1369, 1624, 1977, 2009 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DriI | GACNNNNNGTC | 1 cut(s) | 717 |
| EaeI | YGGCCR | 2 cut(s) | 22, 1021 |
| Eam1104I | CTCTTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 717 |
| EarI | CTCTTC | 1 cut(s) | 306 |
| Eco130I | CCWWGG | 2 cut(s) | 215, 1315 |
| Eco31I | GGTCTC | 1 cut(s) | 1341 |
| Eco47I | GGWCC | 1 cut(s) | 248 |
| Eco57I | CTGAAG | 1 cut(s) | 1008 |
| Eco88I | CYCGRG | 1 cut(s) | 129 |
| EcoO109I | RGGNCCY | 1 cut(s) | 248 |
| EcoRII | CCWGG | 3 cut(s) | 460, 1012, 1639 |
| EcoT14I | CCWWGG | 2 cut(s) | 215, 1315 |
| ErhI | CCWWGG | 2 cut(s) | 215, 1315 |
| Esp3I | CGTCTC | 1 cut(s) | 72 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 804, 836, 1926, 1958 |
| FauI | CCCGC | 1 cut(s) | 1120 |
| FauNDI | CATATG | 1 cut(s) | 1546 |
| FbaI | TGATCA | 4 cut(s) | 571, 1432, 2136, 2179 |
| FblI | GTMKAC | 2 cut(s) | 768, 996 |
| Fnu4HI | GCNGC | 5 cut(s) | 648, 921, 1605, 1938, 2024 |
| FokI | GGATG | 6 cut(s) | 307, 387, 965, 1223, 1613, 1637 |
| Fsp4HI | GCNGC | 5 cut(s) | 648, 921, 1605, 1938, 2024 |
| GluI | GCNGC | 5 cut(s) | 648, 921, 1605, 1938, 2024 |
| HaeIII | GGCC | 2 cut(s) | 24, 1023 |
| HapII | CCGG | 5 cut(s) | 245, 862, 878, 1535, 2090 |
| HincII | GTYRAC | 1 cut(s) | 958 |
| HindII | GTYRAC | 1 cut(s) | 958 |
| HindIII | AAGCTT | 3 cut(s) | 693, 1060, 1673 |
| HinfI | GANTC | 7 cut(s) | 227, 521, 594, 718, 903, 1564, 2031 |
| HpaII | CCGG | 5 cut(s) | 245, 862, 878, 1535, 2090 |
| HphI | GGTGA | 1 cut(s) | 357 |
| Hpy166II | GTNNAC | 7 cut(s) | 605, 769, 958, 997, 1188, 1555, 2082 |
| Hpy188I | TCNGA | 7 cut(s) | 277, 325, 520, 1169, 1449, 1459, 2204 |
| Hpy188III | TCNNGA | 8 cut(s) | 50, 75, 209, 788, 1175, 1238, 1806, 1970 |
| Hpy8I | GTNNAC | 7 cut(s) | 605, 769, 958, 997, 1188, 1555, 2082 |
| Hpy99I | CGWCG | 1 cut(s) | 438 |
| HpyCH4IV | ACGT | 5 cut(s) | 81, 713, 745, 1507, 1975 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 881, 1706, 1906, 1915 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| HpySE526I | ACGT | 5 cut(s) | 81, 713, 745, 1507, 1975 |
| Ksp22I | TGATCA | 4 cut(s) | 571, 1432, 2136, 2179 |
| Lsp1109I | GCAGC | 5 cut(s) | 659, 907, 1591, 1949, 2035 |
| MabI | ACCWGGT | 1 cut(s) | 1639 |
| MaeII | ACGT | 5 cut(s) | 81, 713, 745, 1507, 1975 |
| MaeIII | GTNAC | 5 cut(s) | 464, 612, 1107, 1194, 1925 |
| MfeI | CAATTG | 2 cut(s) | 947, 1665 |
| MflI | RGATCY | 4 cut(s) | 979, 1291, 1477, 2199 |
| MhlI | GDGCHC | 3 cut(s) | 533, 607, 1768 |
| MlsI | TGGCCA | 1 cut(s) | 24 |
| MluCI | AATT | 8 cut(s) | 271, 947, 1283, 1320, 1568, 1665, 1857, 2105 |
| MluNI | TGGCCA | 1 cut(s) | 24 |
| MlyI | GAGTC | 6 cut(s) | 236, 515, 603, 727, 912, 1573 |
| MmeI | TCCRAC | 3 cut(s) | 473, 1483, 2175 |
| MnlI | CCTC | 8 cut(s) | 351, 481, 744, 798, 1593, 2151, 2185, 2209 |
| Mox20I | TGGCCA | 1 cut(s) | 24 |
| MscI | TGGCCA | 1 cut(s) | 24 |
| MseI | TTAA | 4 cut(s) | 690, 1101, 1520, 1629 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1599 |
| Msp20I | TGGCCA | 1 cut(s) | 24 |
| MspI | CCGG | 5 cut(s) | 245, 862, 878, 1535, 2090 |
| MspR9I | CCNGG | 5 cut(s) | 246, 462, 863, 1014, 1641 |
| MunI | CAATTG | 2 cut(s) | 947, 1665 |
| MvaI | CCWGG | 3 cut(s) | 462, 1014, 1641 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 881, 1706, 1906, 1915 |
| NciI | CCSGG | 2 cut(s) | 246, 863 |
| NdeI | CATATG | 1 cut(s) | 1546 |
| NlaIV | GGNNCC | 2 cut(s) | 249, 2201 |
| NmeAIII | GCCGAG | 3 cut(s) | 1066, 1318, 1564 |
| NmuCI | GTSAC | 3 cut(s) | 612, 1107, 1925 |
| NspI | RCATGY | 2 cut(s) | 416, 1003 |
| NspV | TTCGAA | 1 cut(s) | 386 |
| PagI | TCATGA | 1 cut(s) | 1969 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 442, 451 |
| PfeI | GAWTC | 1 cut(s) | 2031 |
| Pfl23II | CGTACG | 1 cut(s) | 1976 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 949 |
| PinAI | ACCGGT | 2 cut(s) | 877, 2089 |
| PkrI | GCNGC | 5 cut(s) | 649, 922, 1606, 1939, 2025 |
| PleI | GAGTC | 6 cut(s) | 235, 515, 602, 726, 911, 1572 |
| PpsI | GAGTC | 6 cut(s) | 235, 515, 602, 726, 911, 1572 |
| PpuMI | RGGWCCY | 1 cut(s) | 248 |
| PsiI | TTATAA | 1 cut(s) | 36 |
| Psp5II | RGGWCCY | 1 cut(s) | 248 |
| Psp6I | CCWGG | 3 cut(s) | 460, 1012, 1639 |
| PspGI | CCWGG | 3 cut(s) | 460, 1012, 1639 |
| PspLI | CGTACG | 1 cut(s) | 1976 |
| PspN4I | GGNNCC | 2 cut(s) | 249, 2201 |
| PspPI | GGNCC | 1 cut(s) | 248 |
| PspPPI | RGGWCCY | 1 cut(s) | 248 |
| PsuI | RGATCY | 4 cut(s) | 979, 1291, 1477, 2199 |
| RsaI | GTAC | 7 cut(s) | 457, 809, 1255, 1370, 1625, 1978, 2010 |
| RsaNI | GTAC | 7 cut(s) | 456, 808, 1254, 1369, 1624, 1977, 2009 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1599 |
| SaqAI | TTAA | 4 cut(s) | 690, 1101, 1520, 1629 |
| SatI | GCNGC | 5 cut(s) | 648, 921, 1605, 1938, 2024 |
| Sau96I | GGNCC | 1 cut(s) | 248 |
| SchI | GAGTC | 6 cut(s) | 236, 515, 603, 727, 912, 1573 |
| ScrFI | CCNGG | 5 cut(s) | 246, 462, 863, 1014, 1641 |
| SduI | GDGCHC | 3 cut(s) | 533, 607, 1768 |
| SexAI | ACCWGGT | 1 cut(s) | 1639 |
| SfcI | CTRYAG | 5 cut(s) | 372, 423, 835, 1797, 1828 |
| SfuI | TTCGAA | 1 cut(s) | 386 |
| SinI | GGWCC | 1 cut(s) | 248 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1599 |
| SmlI | CTYRAG | 4 cut(s) | 209, 1270, 1376, 2155 |
| SmoI | CTYRAG | 4 cut(s) | 209, 1270, 1376, 2155 |
| SpeI | ACTAGT | 1 cut(s) | 1198 |
| Sse9I | AATT | 8 cut(s) | 271, 947, 1283, 1320, 1568, 1665, 1857, 2105 |
| SsiI | CCGC | 2 cut(s) | 420, 1127 |
| StyD4I | CCNGG | 5 cut(s) | 244, 460, 861, 1012, 1639 |
| StyI | CCWWGG | 2 cut(s) | 215, 1315 |
| TaiI | ACGT | 5 cut(s) | 84, 716, 748, 1510, 1978 |
| TaqI | TCGA | 6 cut(s) | 51, 171, 386, 592, 901, 1835 |
| TasI | AATT | 8 cut(s) | 271, 947, 1283, 1320, 1568, 1665, 1857, 2105 |
| TatI | WGTACW | 1 cut(s) | 1253 |
| TfiI | GAWTC | 1 cut(s) | 2031 |
| Tru1I | TTAA | 4 cut(s) | 690, 1101, 1520, 1629 |
| Tru9I | TTAA | 4 cut(s) | 690, 1101, 1520, 1629 |
| TscAI | CASTG | 5 cut(s) | 193, 381, 991, 1116, 1197 |
| TseFI | GTSAC | 3 cut(s) | 612, 1107, 1925 |
| TseI | GCWGC | 5 cut(s) | 647, 920, 1604, 1937, 2023 |
| Tsp45I | GTSAC | 3 cut(s) | 612, 1107, 1925 |
| TspGWI | ACGGA | 3 cut(s) | 102, 917, 2087 |
| TspRI | CASTG | 5 cut(s) | 193, 381, 991, 1116, 1197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 949 |
| VneI | GTGCAC | 1 cut(s) | 603 |
| VpaK11BI | GGWCC | 1 cut(s) | 248 |
| XbaI | TCTAGA | 2 cut(s) | 74, 1237 |
| XceI | RCATGY | 2 cut(s) | 416, 1003 |
| XmaJI | CCTAGG | 2 cut(s) | 215, 1315 |
| XmiI | GTMKAC | 2 cut(s) | 768, 996 |