FvH4_3g03561

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000071
Physical Location & Seq
Reverse (-)
1982582 .. 1984962
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03561.t1

Sequence Viewer

Length: 1212 bp
ATGGATGTTCAAAATGCTTTTTTGCATGGCGAACTACTTGAAGAAGTGTATATGTTGCCGCCTCCAGGTTATCGTCGACAGGGGGAGAACTTGGTATGTCGACTCCACAAGTCTTTATACGGGCTAAAACAGGCATCCCGAAGCTGGTTTCAAAGGTTTTCATATGCCATTCAAGCAATTGGTTTTCAACAGTCTCGTGCCGACTACTCCCTATTTACTCAGGTTCTTGATAACTCAATTACTGTGGTACTTCTTTATGTGGATGACATGATCATAATAGGGAATAATGAGGAGGCCATTCAAAATCTGAAACAATTCCTCAATAGTTGTTTCAAGATTAAAGATCTTGGACCTCTGAAATACTTTCTTGGCCTTGAAGTTGCACGTTCTAAAGCCGGGATTACAATTTGGCAACGAAAGTACACGTTGGACATCTTAGAAGAAGCTGGATTATTGGGAGTGAAACCTTCAACAGTACCAATGGAACTTGATCTGGTATTAACAACGAAGGGAAGTGATACTCTAAAGGATCCAGCTCGATATCGGCGTTTGATTGGGAAACTGATCTACTTGACAATTACCAGACCAGACATCACATTTGCAGTCAATACCCTCAGTCAATTCATGCAAGAACCCAAGCTCCATCATCTAAAAACAGCTCATCGTCTCCTCCAATATTTCAAGTCTGTACCGGGCCAAGGGTTGTTGTTTTCATCACAAAGTCCACTTCATCTAATTGGGTATTGTGACACAGATTGGGCTAGATGCCCGCTTACACGTCGATCTGTGACAGGATATTGTATTTTTCTTGGTCAGTCACTTGTTTCATGGAAAAGCAAGAAGCAGGTCACAGTGTCTAGATCCTCAGCCGAAGCTGAATACCGCTCCATGGCTGTAGCTGCTTGTGAACTCACTTGGCTTAGATACCTGCTCACGGATTTACATGTACTTCATCCTAAGCTAGCAAGACTATTTTGCGACAATCAAGCGGCGTTACATATAGCAGCAAACCCGGTCTACCATGAGAGAACAAAACATATTGAGTTAGATTGTCACACGGTCCGTGAAAGAATTCAAAGGGGAGAAGTCAAAACCGCATATGTGCCAACTGGACACCAGATAGCAGATATGTTCACCAAGCCATTGCGAGGACCCATTTTCCATGCACACCTCAGCAAGTTAGGTGTGATTGACATCCACACGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

404

Amino Acids

45.96

Weight (kDa)

9.24

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 162 1.7e-42 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 835, 936
AccBSI CCGCTC 1 cut(s) 885
AccI GTMKAC 3 cut(s) 76, 100, 1017
AciI CCGC 5 cut(s) 59, 770, 883, 989, 1095
AclWI GGATC 3 cut(s) 524, 537, 855
AcsI RAATTY 1 cut(s) 1071
AfaI GTAC 5 cut(s) 249, 422, 477, 690, 948
AfiI CCNNNNNNNGG 6 cut(s) 65, 144, 698, 889, 934, 1148
AflIII ACRYGT 3 cut(s) 423, 776, 943
AjiI CACGTC 1 cut(s) 779
AjnI CCWGG 1 cut(s) 64
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
AluBI AGCT 8 cut(s) 144, 446, 536, 640, 659, 875, 899, 961
AluI AGCT 8 cut(s) 144, 446, 536, 640, 659, 875, 899, 961
Alw26I GTCTC 2 cut(s) 198, 671
AlwI GGATC 3 cut(s) 524, 537, 855
AoxI GGCC 3 cut(s) 294, 370, 694
ApeKI GCWGC 2 cut(s) 899, 1004
ApoI RAATTY 1 cut(s) 1071
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
Asp700I GAANNNNTTC 2 cut(s) 314, 1071
AspS9I GGNCC 4 cut(s) 350, 694, 1060, 1151
AsuC2I CCSGG 3 cut(s) 397, 693, 1013
AsuHPI GGTGA 1 cut(s) 1126
AsuNHI GCTAGC 1 cut(s) 961
AvaII GGWCC 3 cut(s) 350, 1060, 1151
BamHI GGATCC 1 cut(s) 529
BauI CACGAG 1 cut(s) 195
BbvCI CCTCAGC 2 cut(s) 865, 1172
BbvI GCAGC 2 cut(s) 886, 1016
BccI CCATC 1 cut(s) 651
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 3 cut(s) 397, 693, 1013
BcoDI GTCTC 2 cut(s) 198, 671
BfaI CTAG 3 cut(s) 762, 858, 962
BfmI CTRYAG 1 cut(s) 894
BfuAI ACCTGC 2 cut(s) 835, 936
BglII AGATCT 1 cut(s) 343
BisI GCNGC 4 cut(s) 59, 900, 990, 1005
BlsI GCNGC 4 cut(s) 60, 901, 991, 1006
Bme1390I CCNGG 4 cut(s) 66, 397, 693, 1013
Bme18I GGWCC 3 cut(s) 350, 1060, 1151
BmgBI CACGTC 1 cut(s) 779
BmgT120I GGNCC 4 cut(s) 350, 694, 1060, 1151
BmiI GGNNCC 2 cut(s) 531, 1153
BmrFI CCNGG 4 cut(s) 66, 397, 693, 1013
BmsI GCATC 2 cut(s) 143, 755
BmtI GCTAGC 1 cut(s) 965
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 3 cut(s) 865, 957, 1172
BpuMI CCSGG 3 cut(s) 397, 693, 1013
BsaBI GATNNNNATC 1 cut(s) 1193
BsaJI CCNNGG 2 cut(s) 697, 888
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 6 cut(s) 65, 144, 698, 889, 934, 1148
Bse1I ACTGG 1 cut(s) 1114
Bse3DI GCAATG 1 cut(s) 1142
Bse8I GATNNNNATC 1 cut(s) 1193
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 697, 888
BseGI GGATG 5 cut(s) 10, 134, 268, 952, 1194
BseJI GATNNNNATC 1 cut(s) 1193
BseLI CCNNNNNNNGG 6 cut(s) 65, 144, 698, 889, 934, 1148
BseMI GCAATG 1 cut(s) 1142
BseMII CTCAG 4 cut(s) 233, 628, 879, 1186
BseNI ACTGG 1 cut(s) 1114
BseRI GAGGAG 2 cut(s) 305, 659
BseXI GCAGC 2 cut(s) 886, 1016
BshFI GGCC 3 cut(s) 296, 372, 696
BsiSI CCGG 3 cut(s) 396, 692, 1013
BslI CCNNNNNNNGG 6 cut(s) 65, 144, 698, 889, 934, 1148
BsmAI GTCTC 2 cut(s) 198, 671
BsmBI CGTCTC 1 cut(s) 671
BsnI GGCC 3 cut(s) 296, 372, 696
Bsp143I GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
Bsp19I CCATGG 1 cut(s) 888
BspACI CCGC 5 cut(s) 59, 770, 883, 989, 1095
BspANI GGCC 3 cut(s) 296, 372, 696
BspCNI CTCAG 4 cut(s) 232, 627, 878, 1185
BspLI GGNNCC 2 cut(s) 531, 1153
BspMI ACCTGC 2 cut(s) 835, 936
BspOI GCTAGC 1 cut(s) 965
BspPI GGATC 3 cut(s) 524, 537, 855
BsrBI CCGCTC 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 1142
BsrI ACTGG 1 cut(s) 1114
BssECI CCNNGG 2 cut(s) 697, 888
BssMI GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 697, 888
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 5 cut(s) 192, 244, 475, 853, 1060
BstC8I GCNNGC 2 cut(s) 770, 963
BstDEI CTNAG 7 cut(s) 219, 436, 614, 865, 920, 957, 1172
BstDSI CCRYGG 1 cut(s) 888
BstF5I GGATG 5 cut(s) 10, 134, 268, 952, 1194
BstKTI GATC 7 cut(s) 273, 346, 493, 532, 567, 785, 863
BstMAI GTCTC 2 cut(s) 198, 671
BstMBI GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
BstMWI GCNNNNNNNGC 2 cut(s) 173, 899
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 4 cut(s) 64, 395, 691, 1011
BstSFI CTRYAG 1 cut(s) 894
BstV1I GCAGC 2 cut(s) 886, 1016
BstX2I RGATCY 3 cut(s) 343, 529, 860
BstYI RGATCY 3 cut(s) 343, 529, 860
BsuRI GGCC 3 cut(s) 296, 372, 696
BtgI CCRYGG 1 cut(s) 888
BtrI CACGTC 1 cut(s) 779
BtsCI GGATG 5 cut(s) 10, 134, 268, 952, 1194
BtsIMutI CAGTG 1 cut(s) 858
BveI ACCTGC 2 cut(s) 835, 936
Cac8I GCNNGC 2 cut(s) 770, 963
Cfr13I GGNCC 4 cut(s) 350, 694, 1060, 1151
CpoI CGGWCCG 1 cut(s) 1060
Csp6I GTAC 5 cut(s) 248, 421, 476, 689, 947
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CspI CGGWCCG 1 cut(s) 1060
CviAII CATG 8 cut(s) 26, 268, 625, 828, 889, 944, 1022, 1163
CviQI GTAC 5 cut(s) 248, 421, 476, 689, 947
DdeI CTNAG 7 cut(s) 219, 436, 614, 865, 920, 957, 1172
DpnI GATC 7 cut(s) 272, 345, 492, 531, 566, 784, 862
DpnII GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
Eco130I CCWWGG 2 cut(s) 697, 888
Eco32I GATATC 1 cut(s) 542
Eco47I GGWCC 3 cut(s) 350, 1060, 1151
EcoO109I RGGNCCY 1 cut(s) 1151
EcoRI GAATTC 1 cut(s) 1071
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 542
EcoT14I CCWWGG 2 cut(s) 697, 888
ErhI CCWWGG 2 cut(s) 697, 888
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 8 cut(s) 29, 271, 628, 831, 892, 947, 1025, 1166
FatI CATG 8 cut(s) 25, 267, 624, 827, 888, 943, 1021, 1162
FauI CCCGC 1 cut(s) 777
FauNDI CATATG 2 cut(s) 163, 1099
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 3 cut(s) 76, 100, 1017
Fnu4HI GCNGC 4 cut(s) 59, 900, 990, 1005
FokI GGATG 5 cut(s) 17, 121, 275, 939, 1181
Fsp4HI GCNGC 4 cut(s) 59, 900, 990, 1005
FspBI CTAG 3 cut(s) 762, 858, 962
GluI GCNGC 4 cut(s) 59, 900, 990, 1005
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 3 cut(s) 296, 372, 696
HapII CCGG 3 cut(s) 396, 692, 1013
Hin1II CATG 8 cut(s) 29, 271, 628, 831, 892, 947, 1025, 1166
HincII GTYRAC 2 cut(s) 77, 101
HindII GTYRAC 2 cut(s) 77, 101
HinfI GANTC 1 cut(s) 102
HpaII CCGG 3 cut(s) 396, 692, 1013
HphI GGTGA 1 cut(s) 1126
Hpy166II GTNNAC 7 cut(s) 77, 101, 423, 725, 908, 1018, 1134
Hpy188I TCNGA 2 cut(s) 309, 357
Hpy188III TCNNGA 4 cut(s) 138, 227, 334, 858
Hpy8I GTNNAC 7 cut(s) 77, 101, 423, 725, 908, 1018, 1134
Hpy99I CGWCG 2 cut(s) 78, 783
HpyAV CCTTC 2 cut(s) 477, 502
HpyCH4III ACNGT 5 cut(s) 192, 244, 475, 853, 1060
HpyCH4IV ACGT 3 cut(s) 385, 425, 778
HpyCH4V TGCA 5 cut(s) 25, 383, 602, 628, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 899
HpyF3I CTNAG 7 cut(s) 219, 436, 614, 865, 920, 957, 1172
HpySE526I ACGT 3 cut(s) 385, 425, 778
Hsp92II CATG 8 cut(s) 29, 271, 628, 831, 892, 947, 1025, 1166
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
LmnI GCTCC 2 cut(s) 645, 890
Lsp1109I GCAGC 2 cut(s) 886, 1016
LweI GCATC 2 cut(s) 143, 755
MaeI CTAG 3 cut(s) 762, 858, 962
MaeII ACGT 3 cut(s) 385, 425, 778
MaeIII GTNAC 6 cut(s) 746, 787, 816, 847, 993, 1052
MalI GATC 7 cut(s) 272, 345, 492, 531, 566, 784, 862
MbiI CCGCTC 1 cut(s) 885
MboI GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
MboII GAAGA 2 cut(s) 53, 452
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 3 cut(s) 343, 529, 860
MluCI AATT 8 cut(s) 177, 237, 314, 405, 576, 620, 735, 1071
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 408
MroXI GAANNNNTTC 2 cut(s) 314, 1071
MseI TTAA 2 cut(s) 339, 500
MspI CCGG 3 cut(s) 396, 692, 1013
MspR9I CCNGG 4 cut(s) 66, 397, 693, 1013
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 173, 899
NciI CCSGG 3 cut(s) 397, 693, 1013
NcoI CCATGG 1 cut(s) 888
NdeI CATATG 2 cut(s) 163, 1099
NdeII GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
NheI GCTAGC 1 cut(s) 961
NlaIII CATG 8 cut(s) 29, 271, 628, 831, 892, 947, 1025, 1166
NlaIV GGNNCC 2 cut(s) 531, 1153
NmuCI GTSAC 5 cut(s) 746, 787, 816, 847, 1052
NspI RCATGY 1 cut(s) 947
PciI ACATGT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PdmI GAANNNNTTC 2 cut(s) 314, 1071
PkrI GCNGC 4 cut(s) 60, 901, 991, 1006
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 1151
PscI ACATGT 1 cut(s) 943
Psp5II RGGWCCY 1 cut(s) 1151
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 531, 1153
PspPI GGNCC 4 cut(s) 350, 694, 1060, 1151
PspPPI RGGWCCY 1 cut(s) 1151
PsuI RGATCY 3 cut(s) 343, 529, 860
RsaI GTAC 5 cut(s) 249, 422, 477, 690, 948
RsaNI GTAC 5 cut(s) 248, 421, 476, 689, 947
Rsr2I CGGWCCG 1 cut(s) 1060
RsrII CGGWCCG 1 cut(s) 1060
SalI GTCGAC 2 cut(s) 75, 99
SaqAI TTAA 2 cut(s) 339, 500
SatI GCNGC 4 cut(s) 59, 900, 990, 1005
Sau3AI GATC 7 cut(s) 270, 343, 490, 529, 564, 782, 860
Sau96I GGNCC 4 cut(s) 350, 694, 1060, 1151
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 4 cut(s) 66, 397, 693, 1013
SfaNI GCATC 2 cut(s) 143, 755
SfcI CTRYAG 1 cut(s) 894
SinI GGWCC 3 cut(s) 350, 1060, 1151
Sse9I AATT 8 cut(s) 177, 237, 314, 405, 576, 620, 735, 1071
SsiI CCGC 5 cut(s) 59, 770, 883, 989, 1095
SspI AATATT 1 cut(s) 677
SspMI CTAG 3 cut(s) 762, 858, 962
StyD4I CCNGG 4 cut(s) 64, 395, 691, 1011
StyI CCWWGG 2 cut(s) 697, 888
TaaI ACNGT 5 cut(s) 192, 244, 475, 853, 1060
TaiI ACGT 3 cut(s) 388, 428, 781
TaqI TCGA 4 cut(s) 76, 100, 538, 781
TasI AATT 8 cut(s) 177, 237, 314, 405, 576, 620, 735, 1071
TatI WGTACW 2 cut(s) 420, 946
TauI GCSGC 2 cut(s) 61, 992
Tru1I TTAA 2 cut(s) 339, 500
Tru9I TTAA 2 cut(s) 339, 500
TscAI CASTG 1 cut(s) 858
TseFI GTSAC 5 cut(s) 746, 787, 816, 847, 1052
TseI GCWGC 2 cut(s) 899, 1004
Tsp45I GTSAC 5 cut(s) 746, 787, 816, 847, 1052
TspDTI ATGAA 6 cut(s) 150, 613, 702, 719, 816, 941
TspGWI ACGGA 2 cut(s) 950, 1052
TspRI CASTG 1 cut(s) 858
VpaK11BI GGWCC 3 cut(s) 350, 1060, 1151
XapI RAATTY 1 cut(s) 1071
XbaI TCTAGA 1 cut(s) 857
XceI RCATGY 1 cut(s) 947
XmiI GTMKAC 3 cut(s) 76, 100, 1017
XmnI GAANNNNTTC 2 cut(s) 314, 1071
XspI CTAG 3 cut(s) 762, 858, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.