MD00G1134200.v1.1

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000071
Physical Location & Seq
Reverse (-)
29072467 .. 29078807
6341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1134200.v1.1.491

Sequence Viewer

Length: 1725 bp
ATGCAGGTGATTTCAGTCATGTATGTAGGTCACCTTGGAGAGGCCACTTCATTTGCTTCAGTCACTGGTTTGAGCTTGATAATAGGAATGGGGAGTGCATTAGACACATTCTGCGGCCAGTCCTATGGTGCAAAACAGTATCACATGCTTGGTATACACTTACAGAGAGCAATGCTTGTTCTTGGCCTGGTCTGCATTCCTTTGGCAACTGTATGGTTCAATGCTGGCACAGCAACGCTATTGCACTTGTTTCTCTCTTGGTTTCTGGTATACAAGACTAGCCTTGGATATATTGGTGCGGCGTTGCCAAACTCCATCTCTTATTGGATCAATGCATTGTTGTTAGTTGTTTATGTTAGAGTCTCTCCCTCTTGTAAGCACACATGGACTGGATTCTCAATGGAGGCCTTCCGTGGAATTCCCGATTTTATAAAACTATCTATTCCTTCTGCTGTAATGATCAGCACAAGGGTTTCAAATCAATTGGGTGATAGTCAACCACGACTCGCAATTCTAGCAGTACGTGTTGCACTGTCCATTGTGGTTATTGAAGGCTTTTTGATCGGTGCTGTCCTCGATTCCCGTTGGAATGATGCAATGAACGAGGAATTGAGATCATTAAAGAAGAATGCTACCTCGGAAATAACTGACTTGCCAACCAGAAAGAAAATTGTGGGATTCAAATGGGTTTATACAGTAAAATACAAAGCCGATGGAACGGTAGATCGCTTTAAAGCACAGTTGGTGGCAAAGAGGTATACACAGAAATATGGCATCGACTACACTGATATGTTCGCACCAGTGGCAAAGATCAATACAGTTCGTGTTCTACTGTCCTTGGCAGCAAATCTGAATTGGCCTTTGCAACAGTTCGACGTAAAAAATGCATTCCTCCATGGAGATCTAACTGAGGAGATTTACATGGACCTTCCACCAAGGTGCAATGATTCGGACATATGGAAACAAAAGGTATGTAGGCTCAAGAAATCATTGTATGGATTAAAGCAGTTTCCTAGAGCCTGGTTTGGTAGATTTACCAAGTCCATGAGGGCATTTGGGTATAGGCAAAGTAATTGGGATCACACGTTATTTCTGAAACATCAGAACAGAAAGGTTACAGCTCTAATCGTGTTTGTGGATGATATAGTAGTTACTGGTAACGATCCTGTTGAGCAAGCAGCCTTGAAAAGTTATTTGTCCACAGAATTTGAAATGAAAGATCTTGGTTCTTTGAAATATTTTCTTGGGATTGAAGTGTCAAGATGCAAGTCTGGGATATTTCTATCACAAAGGAAGTATGTTCTTGACATGTTGGAAGAAACCGATATGACAGCGTGTAAGCCGGTGTCTACTTCGTTGGCCGAAGGAATGAAGGTGGGTATAGATCAGAACCAAGTACTGGTTGATAAAAGGAGGTATCAAAGGTTAGTAGGAAGATTAATGTACTTGGCTCACACTAGGCCGGATCTTGCTCATGCCTTAAGTGTGATTAGTCAATATATGCACAATCCAGGAGAACAACATATGAGTGCAGTTATGAGACTATTAAGTTACTTAAAAGGAAGCCCTGGTTCTTCACAGGGCCTTTGGACGGGAATTATCGTGGCTCTATTCATGGAGGCACTATGTCTTTCGATCATAATCATATGCACAAATTGGGAGAAAGAAGTGAAGAATGCTTCTGACAGAGTGTACAACACAATGACCTCGGCTGATATGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

575

Amino Acids

64.54

Weight (kDa)

9.31

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 10 - 87 7.5e-11 MatE
RVT_2 PF07727 211 - 452 2.8e-63 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 1399
AccI GTMKAC 4 cut(s) 154, 270, 758, 1349
AciI CCGC 2 cut(s) 114, 299
AclWI GGATC 4 cut(s) 335, 1086, 1157, 1473
AcoI YGGCCR 2 cut(s) 115, 1359
AcsI RAATTY 2 cut(s) 417, 1205
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 4 cut(s) 522, 1398, 1445, 1694
AfiI CCNNNNNNNGG 3 cut(s) 40, 1399, 1591
AflII CTTAAG 1 cut(s) 1480
AflIII ACRYGT 3 cut(s) 523, 1083, 1308
AgsI TTSAA 8 cut(s) 220, 477, 551, 682, 1186, 1211, 1234, 1253
AjnI CCWGG 4 cut(s) 186, 1019, 1510, 1567
AleI CACNNNNGTG 1 cut(s) 937
AluBI AGCT 2 cut(s) 75, 1121
AluI AGCT 2 cut(s) 75, 1121
Alw26I GTCTC 2 cut(s) 367, 1534
AlwI GGATC 4 cut(s) 335, 1086, 1157, 1473
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 8 cut(s) 42, 115, 184, 405, 857, 1359, 1460, 1582
ApeKI GCWGC 2 cut(s) 842, 1178
ApoI RAATTY 2 cut(s) 417, 1205
AseI ATTAAT 1 cut(s) 1439
AspS9I GGNCC 2 cut(s) 925, 1582
AsuHPI GGTGA 3 cut(s) 19, 23, 500
AvaII GGWCC 1 cut(s) 925
BbvI GCAGC 2 cut(s) 854, 1190
BccI CCATC 2 cut(s) 323, 707
BciT130I CCWGG 4 cut(s) 188, 1021, 1512, 1569
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 2 cut(s) 367, 1534
BfaI CTAG 4 cut(s) 279, 515, 1014, 1458
BfrI CTTAAG 1 cut(s) 1480
BglII AGATCT 2 cut(s) 901, 1219
BisI GCNGC 4 cut(s) 115, 300, 843, 1179
BlsI GCNGC 4 cut(s) 116, 301, 844, 1180
BmcAI AGTACT 1 cut(s) 1398
Bme1390I CCNGG 4 cut(s) 188, 1021, 1512, 1569
Bme18I GGWCC 1 cut(s) 925
BmgT120I GGNCC 2 cut(s) 925, 1582
BmrFI CCNGG 4 cut(s) 188, 1021, 1512, 1569
BmsI GCATC 3 cut(s) 583, 783, 1253
BpuEI CTTGAG 1 cut(s) 965
BsaAI YACGTR 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 1640
BsaJI CCNNGG 9 cut(s) 34, 283, 412, 636, 837, 895, 935, 1567, 1707
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 1399, 1591
Bse118I RCCGGY 1 cut(s) 1342
Bse1I ACTGG 6 cut(s) 70, 118, 394, 800, 1159, 1404
Bse3DI GCAATG 3 cut(s) 177, 603, 949
Bse8I GATNNNNATC 1 cut(s) 1640
BseBI CCWGG 4 cut(s) 188, 1021, 1512, 1569
BseDI CCNNGG 9 cut(s) 34, 283, 412, 636, 837, 895, 935, 1567, 1707
BseGI GGATG 1 cut(s) 1144
BseJI GATNNNNATC 1 cut(s) 1640
BseLI CCNNNNNNNGG 3 cut(s) 40, 1399, 1591
BseMI GCAATG 3 cut(s) 177, 603, 949
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 6 cut(s) 70, 118, 394, 800, 1159, 1404
BseRI GAGGAG 1 cut(s) 926
BseXI GCAGC 2 cut(s) 854, 1190
BsgI GTGCAG 1 cut(s) 1551
BshFI GGCC 8 cut(s) 44, 117, 186, 407, 859, 1361, 1462, 1584
BsiSI CCGG 2 cut(s) 1343, 1463
BslI CCNNNNNNNGG 3 cut(s) 40, 1399, 1591
BsmAI GTCTC 2 cut(s) 367, 1534
BsmI GAATGC 4 cut(s) 195, 634, 887, 1681
BsnI GGCC 8 cut(s) 44, 117, 186, 407, 859, 1361, 1462, 1584
Bsp1407I TGTACA 1 cut(s) 1692
Bsp19I CCATGG 1 cut(s) 895
BspACI CCGC 2 cut(s) 114, 299
BspANI GGCC 8 cut(s) 44, 117, 186, 407, 859, 1361, 1462, 1584
BspCNI CTCAG 1 cut(s) 901
BspPI GGATC 4 cut(s) 335, 1086, 1157, 1473
BspTI CTTAAG 1 cut(s) 1480
BsrDI GCAATG 3 cut(s) 177, 603, 949
BsrFI RCCGGY 1 cut(s) 1342
BsrGI TGTACA 1 cut(s) 1692
BsrI ACTGG 6 cut(s) 70, 118, 394, 800, 1159, 1404
BssAI RCCGGY 1 cut(s) 1342
BssECI CCNNGG 9 cut(s) 34, 283, 412, 636, 837, 895, 935, 1567, 1707
BssNAI GTATAC 3 cut(s) 155, 271, 759
BssT1I CCWWGG 5 cut(s) 34, 283, 837, 895, 935
Bst1107I GTATAC 3 cut(s) 155, 271, 759
Bst2UI CCWGG 4 cut(s) 188, 1021, 1512, 1569
Bst4CI ACNGT 9 cut(s) 138, 211, 534, 697, 721, 741, 820, 834, 870
BstAFI CTTAAG 1 cut(s) 1480
BstAUI TGTACA 1 cut(s) 1692
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 226, 1176
BstDEI CTNAG 1 cut(s) 909
BstDSI CCRYGG 2 cut(s) 412, 895
BstEII GGTNACC 1 cut(s) 29
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 1144
BstMAI GTCTC 2 cut(s) 367, 1534
BstMWI GCNNNNNNNGC 4 cut(s) 192, 230, 515, 803
BstNI CCWGG 4 cut(s) 188, 1021, 1512, 1569
BstNSI RCATGY 2 cut(s) 148, 1312
BstPI GGTNACC 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 186, 1019, 1510, 1567
BstV1I GCAGC 2 cut(s) 854, 1190
BstX2I RGATCY 3 cut(s) 901, 1219, 1465
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 3 cut(s) 901, 1219, 1465
BstZ17I GTATAC 3 cut(s) 155, 271, 759
BsuRI GGCC 8 cut(s) 44, 117, 186, 407, 859, 1361, 1462, 1584
BtgI CCRYGG 2 cut(s) 412, 895
BtsCI GGATG 1 cut(s) 1144
BtsIMutI CAGTG 4 cut(s) 63, 530, 783, 807
Cac8I GCNNGC 2 cut(s) 226, 1176
CaiI CAGNNNCTG 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 1342
Cfr13I GGNCC 2 cut(s) 925, 1582
Csp6I GTAC 4 cut(s) 521, 1397, 1444, 1693
CspCI CAANNNNNGTGG 4 cut(s) 34, 69, 1189, 1224
CviAII CATG 9 cut(s) 19, 145, 384, 896, 922, 1045, 1309, 1475, 1615
CviQI GTAC 4 cut(s) 521, 1397, 1444, 1693
DdeI CTNAG 1 cut(s) 909
DraI TTTAAA 1 cut(s) 733
EaeI YGGCCR 2 cut(s) 115, 1359
Eco130I CCWWGG 5 cut(s) 34, 283, 837, 895, 935
Eco147I AGGCCT 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 42
Eco91I GGTNACC 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 1582
EcoO65I GGTNACC 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 417
EcoRII CCWGG 4 cut(s) 186, 1019, 1510, 1567
EcoT14I CCWWGG 5 cut(s) 34, 283, 837, 895, 935
EcoT22I ATGCAT 2 cut(s) 337, 889
ErhI CCWWGG 5 cut(s) 34, 283, 837, 895, 935
FaeI CATG 9 cut(s) 22, 148, 387, 899, 925, 1048, 1312, 1478, 1618
FatI CATG 9 cut(s) 18, 144, 383, 895, 921, 1044, 1308, 1474, 1614
FauNDI CATATG 3 cut(s) 956, 1524, 1646
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 4 cut(s) 154, 270, 758, 1349
Fnu4HI GCNGC 4 cut(s) 115, 300, 843, 1179
FokI GGATG 1 cut(s) 1151
Fsp4HI GCNGC 4 cut(s) 115, 300, 843, 1179
FspBI CTAG 4 cut(s) 279, 515, 1014, 1458
GluI GCNGC 4 cut(s) 115, 300, 843, 1179
HaeIII GGCC 8 cut(s) 44, 117, 186, 407, 859, 1361, 1462, 1584
HapII CCGG 2 cut(s) 1343, 1463
Hin1II CATG 9 cut(s) 22, 148, 387, 899, 925, 1048, 1312, 1478, 1618
HincII GTYRAC 1 cut(s) 497
HindII GTYRAC 1 cut(s) 497
HinfI GANTC 6 cut(s) 360, 393, 504, 578, 678, 947
HpaII CCGG 2 cut(s) 1343, 1463
HphI GGTGA 3 cut(s) 19, 23, 500
Hpy166II GTNNAC 7 cut(s) 155, 271, 497, 759, 1200, 1350, 1693
Hpy188I TCNGA 7 cut(s) 640, 852, 952, 1095, 1104, 1389, 1684
Hpy188III TCNNGA 4 cut(s) 422, 982, 1260, 1304
Hpy8I GTNNAC 7 cut(s) 155, 271, 497, 759, 1200, 1350, 1693
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 6 cut(s) 418, 456, 545, 938, 1358, 1366
HpyCH4III ACNGT 9 cut(s) 138, 211, 534, 697, 721, 741, 820, 834, 870
HpyCH4IV ACGT 3 cut(s) 523, 876, 1085
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 230, 515, 803
HpyF3I CTNAG 1 cut(s) 909
HpySE526I ACGT 3 cut(s) 523, 876, 1085
Hsp92II CATG 9 cut(s) 22, 148, 387, 899, 925, 1048, 1312, 1478, 1618
Ksp22I TGATCA 1 cut(s) 459
Lsp1109I GCAGC 2 cut(s) 854, 1190
LweI GCATC 3 cut(s) 583, 783, 1253
MaeI CTAG 4 cut(s) 279, 515, 1014, 1458
MaeII ACGT 3 cut(s) 523, 876, 1085
MaeIII GTNAC 6 cut(s) 29, 61, 1114, 1150, 1157, 1550
MboII GAAGA 5 cut(s) 637, 1328, 1446, 1566, 1684
MfeI CAATTG 1 cut(s) 482
MflI RGATCY 3 cut(s) 901, 1219, 1465
MlyI GAGTC 2 cut(s) 369, 498
MmeI TCCRAC 2 cut(s) 566, 1293
Mph1103I ATGCAT 2 cut(s) 337, 889
MseI TTAA 7 cut(s) 620, 732, 1001, 1439, 1481, 1547, 1556
MslI CAYNNNNRTG 3 cut(s) 788, 937, 1527
MspCI CTTAAG 1 cut(s) 1480
MspI CCGG 2 cut(s) 1343, 1463
MspR9I CCNGG 4 cut(s) 188, 1021, 1512, 1569
MunI CAATTG 1 cut(s) 482
Mva1269I GAATGC 4 cut(s) 195, 634, 887, 1681
MvaI CCWGG 4 cut(s) 188, 1021, 1512, 1569
MwoI GCNNNNNNNGC 4 cut(s) 192, 230, 515, 803
NcoI CCATGG 1 cut(s) 895
NdeI CATATG 3 cut(s) 956, 1524, 1646
NlaIII CATG 9 cut(s) 22, 148, 387, 899, 925, 1048, 1312, 1478, 1618
NmeAIII GCCGAG 1 cut(s) 1688
NmuCI GTSAC 2 cut(s) 29, 61
NsiI ATGCAT 2 cut(s) 337, 889
NspI RCATGY 2 cut(s) 148, 1312
OliI CACNNNNGTG 1 cut(s) 937
PceI AGGCCT 1 cut(s) 407
PciI ACATGT 1 cut(s) 1308
PctI GAATGC 4 cut(s) 195, 634, 887, 1681
PfeI GAWTC 4 cut(s) 393, 578, 678, 947
PflMI CCANNNNNTGG 1 cut(s) 1399
PfoI TCCNGGA 1 cut(s) 1510
PkrI GCNGC 4 cut(s) 116, 301, 844, 1180
PleI GAGTC 2 cut(s) 368, 498
PpsI GAGTC 2 cut(s) 368, 498
Ppu21I YACGTR 1 cut(s) 524
PscI ACATGT 1 cut(s) 1308
PshBI ATTAAT 1 cut(s) 1439
PsiI TTATAA 1 cut(s) 431
Psp6I CCWGG 4 cut(s) 186, 1019, 1510, 1567
PspEI GGTNACC 1 cut(s) 29
PspGI CCWGG 4 cut(s) 186, 1019, 1510, 1567
PspPI GGNCC 2 cut(s) 925, 1582
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 3 cut(s) 901, 1219, 1465
RsaI GTAC 4 cut(s) 522, 1398, 1445, 1694
RsaNI GTAC 4 cut(s) 521, 1397, 1444, 1693
RseI CAYNNNNRTG 3 cut(s) 788, 937, 1527
SaqAI TTAA 7 cut(s) 620, 732, 1001, 1439, 1481, 1547, 1556
SatI GCNGC 4 cut(s) 115, 300, 843, 1179
Sau96I GGNCC 2 cut(s) 925, 1582
ScaI AGTACT 1 cut(s) 1398
SchI GAGTC 2 cut(s) 369, 498
ScrFI CCNGG 4 cut(s) 188, 1021, 1512, 1569
SfaNI GCATC 3 cut(s) 583, 783, 1253
SinI GGWCC 1 cut(s) 925
SmiMI CAYNNNNRTG 3 cut(s) 788, 937, 1527
SmlI CTYRAG 2 cut(s) 980, 1480
SmoI CTYRAG 2 cut(s) 980, 1480
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 2 cut(s) 114, 299
SspI AATATT 1 cut(s) 1238
SspMI CTAG 4 cut(s) 279, 515, 1014, 1458
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 186, 1019, 1510, 1567
StyI CCWWGG 5 cut(s) 34, 283, 837, 895, 935
TaaI ACNGT 9 cut(s) 138, 211, 534, 697, 721, 741, 820, 834, 870
TaiI ACGT 3 cut(s) 526, 879, 1088
TaqI TCGA 4 cut(s) 576, 777, 873, 1634
TatI WGTACW 3 cut(s) 1396, 1443, 1692
TauI GCSGC 2 cut(s) 117, 302
TfiI GAWTC 4 cut(s) 393, 578, 678, 947
Tru1I TTAA 7 cut(s) 620, 732, 1001, 1439, 1481, 1547, 1556
Tru9I TTAA 7 cut(s) 620, 732, 1001, 1439, 1481, 1547, 1556
TscAI CASTG 4 cut(s) 70, 537, 790, 807
TseFI GTSAC 2 cut(s) 29, 61
TseI GCWGC 2 cut(s) 842, 1178
Tsp45I GTSAC 2 cut(s) 29, 61
TspDTI ATGAA 5 cut(s) 39, 614, 1229, 1385, 1603
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 4 cut(s) 70, 537, 790, 807
Van91I CCANNNNNTGG 1 cut(s) 1399
Vha464I CTTAAG 1 cut(s) 1480
VpaK11BI GGWCC 1 cut(s) 925
VspI ATTAAT 1 cut(s) 1439
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 417, 1205
XceI RCATGY 2 cut(s) 148, 1312
XmiI GTMKAC 4 cut(s) 154, 270, 758, 1349
XspI CTAG 4 cut(s) 279, 515, 1014, 1458
ZrmI AGTACT 1 cut(s) 1398
Zsp2I ATGCAT 2 cut(s) 337, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.