Rw5G041550

mitochondrial protein AtMg00810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000071
Physical Location & Seq
Reverse (-)
73103847 .. 73104677
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041550.1

Sequence Viewer

Length: 831 bp
ATGGCCACATCTTACAAGGGGCTATTTCTAAACCAAAGAAAGTATTTAATGGATCTTCTGGAAGAAGTTGAGATAATGGACAGCAAGCCTCGTGCCACGCCCCTTGACAGCAAATTGAAACTAAAACTGGAAGGTGATAAACTCAGTAATATAGGTGAGTATCAAAGACTTGTTGGGAAGTTGATCTACCTCACCATTACAAGACCAGACATTACTTTTGCAGTAAGTCTGGTCAGCCAATTTATGCATGCACCTACTGAAGCACATCTACAGATTGTCAAAAGGATTCTCAGATATCTCAATGGTTCCATTGGAAGAGGAATACTAATGCAGAATAATCAACATACAAAGATAATGGGGTTCTCTGATGCAGATTGGGCTGGAAATGCCTGTGATCGAAAGTCTACCACTGGTTATTGCACTTTTGTTGGTGGAAATTTAGTGTCGTGGAAGAGCAAGAAACAGACTGTAATTGCTCGATCGAGTGCAGAGGCTGAATATAGGGTCATGGCCTCTACTGCTTGTGAGTTGATTTGGTTGAAATATCTCCTATCTAATTTAGGAATCCATCATGATCAACCTATTCCTATGTTTTGCGACAATCAAGCCGCAATGCACATTGCTGCCAATCCAGTTTTCCATGAGCGCACCAAGCATATCGAGGTTGATTGCCACTATGTTAGATCTCAAGTTCAAAACAAGGTGATTGATACTGTTTTCACTCGAAGCCATGATCAACTTGCAGATATCTTCACAAAATCTCTTCCTTCTGTCCAGTTTCTCCGGTTGCTTTCCAAGCTTGGATCCATCAATCTTCTGGATCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

276

Amino Acids

31.21

Weight (kDa)

9.11

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 404
AciI CCGC 1 cut(s) 609
AclWI GGATC 5 cut(s) 60, 798, 811, 815, 828
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 279
AgsI TTSAA 3 cut(s) 118, 541, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 2 cut(s) 799, 827
AluI AGCT 2 cut(s) 799, 827
AlwI GGATC 5 cut(s) 60, 798, 811, 815, 828
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 2 cut(s) 3, 510
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspLEI GCGC 1 cut(s) 648
AsuHPI GGTGA 4 cut(s) 146, 167, 184, 715
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 803, 820
BarI GAAGNNNNNNTAC 4 cut(s) 170, 202, 252, 284
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 1 cut(s) 610
BccI CCATC 2 cut(s) 576, 815
BclI TGATCA 2 cut(s) 574, 733
BfmI CTRYAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 683
BisI GCNGC 2 cut(s) 609, 624
BlsI GCNGC 2 cut(s) 610, 625
BmiI GGNNCC 3 cut(s) 307, 805, 822
BmsI GCATC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 783
Bse1I ACTGG 4 cut(s) 132, 415, 632, 775
Bse3DI GCAATG 2 cut(s) 618, 618
BseMI GCAATG 2 cut(s) 618, 618
BseMII CTCAG 2 cut(s) 157, 304
BseNI ACTGG 4 cut(s) 132, 415, 632, 775
BseXI GCAGC 1 cut(s) 610
BsgI GTGCAG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 482
BshFI GGCC 2 cut(s) 5, 512
BsiEI CGRYCG 1 cut(s) 482
BsiSI CCGG 1 cut(s) 784
BsnI GGCC 2 cut(s) 5, 512
Bsp143I GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
BspACI CCGC 1 cut(s) 609
BspANI GGCC 2 cut(s) 5, 512
BspCNI CTCAG 2 cut(s) 156, 303
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 3 cut(s) 307, 805, 822
BspPI GGATC 5 cut(s) 60, 798, 811, 815, 828
BspQI GCTCTTC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 618, 618
BsrI ACTGG 4 cut(s) 132, 415, 632, 775
BssMI GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 469, 715
Bst6I CTCTTC 3 cut(s) 310, 446, 768
BstC8I GCNNGC 2 cut(s) 86, 249
BstDEI CTNAG 2 cut(s) 143, 290
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 9 cut(s) 55, 186, 397, 482, 577, 686, 736, 806, 823
BstMBI GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
BstMCI CGRYCG 1 cut(s) 482
BstMWI GCNNNNNNNGC 5 cut(s) 377, 386, 518, 652, 796
BstNSI RCATGY 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 610
BstX2I RGATCY 4 cut(s) 52, 683, 803, 820
BstYI RGATCY 4 cut(s) 52, 683, 803, 820
BsuRI GGCC 2 cut(s) 5, 512
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 86, 249
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 648
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 5 cut(s) 248, 508, 572, 641, 731
DdeI CTNAG 2 cut(s) 143, 290
DpnI GATC 9 cut(s) 54, 185, 396, 481, 576, 685, 735, 805, 822
DpnII GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 310, 446, 768
EarI CTCTTC 3 cut(s) 310, 446, 768
Eco32I GATATC 2 cut(s) 296, 748
Eco57I CTGAAG 1 cut(s) 279
EcoRV GATATC 2 cut(s) 296, 748
EcoT22I ATGCAT 1 cut(s) 249
FaeI CATG 5 cut(s) 251, 511, 575, 644, 734
FatI CATG 5 cut(s) 247, 507, 571, 640, 730
FbaI TGATCA 2 cut(s) 574, 733
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 2 cut(s) 609, 624
Fsp4HI GCNGC 2 cut(s) 609, 624
GlaI GCGC 1 cut(s) 647
GluI GCNGC 2 cut(s) 609, 624
HaeIII GGCC 2 cut(s) 5, 512
HapII CCGG 1 cut(s) 784
HhaI GCGC 1 cut(s) 648
Hin1II CATG 5 cut(s) 251, 511, 575, 644, 734
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 2 cut(s) 286, 564
HpaII CCGG 1 cut(s) 784
HphI GGTGA 4 cut(s) 146, 167, 184, 715
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 293, 367
Hpy188III TCNNGA 3 cut(s) 59, 572, 818
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 125, 777
HpyCH4III ACNGT 2 cut(s) 469, 715
HpyCH4V TGCA 9 cut(s) 221, 247, 251, 331, 371, 420, 488, 616, 743
HpyF10VI GCNNNNNNNGC 5 cut(s) 377, 386, 518, 652, 796
HpyF3I CTNAG 2 cut(s) 143, 290
Hsp92II CATG 5 cut(s) 251, 511, 575, 644, 734
HspAI GCGC 1 cut(s) 646
Ksp22I TGATCA 2 cut(s) 574, 733
Kzo9I GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
LguI GCTCTTC 1 cut(s) 446
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 1 cut(s) 358
MalI GATC 9 cut(s) 54, 185, 396, 481, 576, 685, 735, 805, 822
MboI GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
MboII GAAGA 7 cut(s) 47, 74, 327, 463, 742, 755, 806
MflI RGATCY 4 cut(s) 52, 683, 803, 820
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 113, 239, 436, 471, 556
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 99, 200, 311, 484, 523, 655
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 249
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 784
MwoI GCNNNNNNNGC 5 cut(s) 377, 386, 518, 652, 796
NdeII GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
NlaIII CATG 5 cut(s) 251, 511, 575, 644, 734
NlaIV GGNNCC 3 cut(s) 307, 805, 822
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 1 cut(s) 251
PaeI GCATGC 1 cut(s) 251
PagI TCATGA 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 286, 564
PkrI GCNGC 2 cut(s) 610, 625
Ple19I CGATCG 1 cut(s) 482
PspN4I GGNNCC 3 cut(s) 307, 805, 822
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 4 cut(s) 52, 683, 803, 820
PvuI CGATCG 1 cut(s) 482
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 609, 624
Sau3AI GATC 9 cut(s) 52, 183, 394, 479, 574, 683, 733, 803, 820
SetI ASST 9 cut(s) 136, 157, 192, 256, 583, 666, 705, 801, 829
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
SphI GCATGC 1 cut(s) 251
Sse9I AATT 5 cut(s) 113, 239, 436, 471, 556
SsiI CCGC 1 cut(s) 609
TaaI ACNGT 2 cut(s) 469, 715
TaqI TCGA 5 cut(s) 397, 478, 482, 660, 724
TasI AATT 5 cut(s) 113, 239, 436, 471, 556
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 2 cut(s) 286, 564
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 415
TseI GCWGC 1 cut(s) 623
TspRI CASTG 1 cut(s) 415
XapI RAATTY 1 cut(s) 436
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XmiI GTMKAC 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.