Rw0G001640
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00047
OG0000071
Physical Location & Seq
Reverse (-)
16262 .. 20862
4601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001640.1

Sequence Viewer

Length: 3006 bp
ATGGCTGGTGATAACGTCCCACCATCACCATCCAATCCCAGCAAATCAGATAATTCAAAATCTGATGTCTCAAATCCATTCTTCACTCATCATTCAGACCACCCTGGATTGGTCCTAGTCTCCAAGCCTTTGAATGGAGACAATTACACAGGTTGGAAGAGGGCTATGACATTGGCTCTTAATTCTAAAAACAAACTCGGCTTTGTGAATGGTTCAATCAAAGCTCCATCATCCGAAGCTGATCCTGAAGGATATGCAACTTGGTCAAGATGCAATGACATGGTCCATTCATGGATCGTTAACACTGTCAGTTCTGAAATTGCTGACAGTATCATCTACTATCCTACAGCTCATGAGGTATGGGAAGATCTAAGTGAGCGTTTTTCACAAGGCAATGCACCTCGCATATTTGAAATTCAGCGAGACATCGCTTTACTCAGGCAAGAACAACAATCAGTTTCAGCATACTACACGAAATTGAAGAGTTTATGGGATGAATTGGCAACCTATTCAGAAGCATCACAAGGAGCCCAGGCAGATCAACAGAAACTTATGCAGTTCTTGATGGGATTAAATGAGACTTACAGCGCAACCCGCGGTCAAATCCTCTTGATGAATCCCCTTCCAAGTATCAGACAAGCGTATGCTGCCGTTGCCCAAGAAGAGAAGCAACGTTTCATTGCAGCAGCGGAGTCTGGTTCAAGCGCTGCTGCCATGGCAGTTCGAAGTGGCGGCCGGTCGAACCAGATCGGCAGCAGAGGCGGTCGTGGTGACCGACTGAATTTTCGGACCGGTCAGGATGCAGAACACGGCTTCACCCCGCGTTTTGGTTCAGGTCGAGGAAGGGGAAGGCCGCATTGTACCTATTGTGGTGATCCTGGACATTGGGTCCAAACATGCTTTCACTTGATTGGTTTTCCTCCAGGTCATCCCAAAGCAAAGCAAGGATCAGGAAATTTCCCCAAGAAGCACACTGCTTCACCAGTCGCGCCCTCTCCTTCTGCTCACCAGGTTAGTGCGACAGGCATCGTAGAAGAGGTGAAAGGATCAGCAATTACTTTATCTGAGGCCCAATTCCAGCAGTTTTTAGCTGCTATTCAACAAGCCCAAAAGCCCAATCCAAATACTGACTCGATTTCCAAAGCAAATGCAGTAACGCAGCCAGGTTTGTCTAGAGTTGCTTCCCGCAATTGGATTATTGATAGCGGGGCGACAGATCATATTACTTCGTGCTCTAAATTGTTGAATAAAAATAAAAAATATGCATTACCGCCTGTTTTGCTACCTAGTGGAGAAAAAATGCATATTGAAGCCACAGGTTCTATGCCTCTGAGTACCGCATATTATCTACATGATGTACTGTTTGTGCCAAAGTTTAAGGATCTGGCTACGAAGAGGACGATTGGTTTGGGTAAAGAACGTGATGGGCTATACTATTTGGTGGCACTGGTGACGGAGCAAACCAAACATTCCATTACTAAACCTTCCAGATCATCTTGCAACCTTGCAATTTCCGCTACCAACCTTTGGCATCATCGCTTGGGTCATGCCAACGGTACATGGACACTCACCACGCTGCCCCCTGGGAAGTCCCCCATTGGTTGTCGATGGGTTTATAAAGTCAAGCACAAGTCTGATGGTTCCATTGAACGATACAAGGCCCGGTTGGTGGCCAAGGGCTTCACGCAGATGGCAGGTATTGACTATCAGGACACCTTTTCTCCTACTGCTAAAATAGTTACAGTCCGTTGTCTACTTGCATTGGCTGCGTCCCGTGGCTGGTCCCTTTCTCAACTCGATGTCAACAATGCCTTCCTCCATGGCAATCTGGATGAAGAGATTTATATGTCTCCACCGCCAGGGCTTCGGAGACAGGGGGAGGAGCATTTGGTTTGTCGGTTGCATAAATCCTTGTATGGTCTAAAACAAGCTTCAAGGCAGTGGTTTTCTAGATTTTCAGAAGTTATTCGATCTGCTGGTTTTGTGCAATCTAGAGCGGACTACTCTCTTTTTACCAGAAGGCAAGGCAAGTCATTTACAGTCTTATTGATATATGTTGATGACATCTTAATTACTGGCAATGATCCTGTGAGTATTGCTGATGTTAAGAATTTTCTGCATAAAACATTTCGTTTGAAAGATCTTGGCTGCGTAAAGTATTTTCTTGGCATTGAGGTTTCTGCATCCAAGAGAGGAATTTTTATTTGTCAGCGCAAGTATGCGTTAGAAATTATAAAAGATGCAGGATTATTGGGCGCTGCCCCTGTTGATACACCCATGGAACGTGGTTTAAAGCTGTCAGATAAGACTGAGTTACTCAAAGATCCAGAGAAGTATAGGCGTTTGGTTGGAAGATTGATCTATCTCACAGTGTCAAGGCCAGATATTACATATCCTGTTCATATATTAAGCAGGTTTATGCATCAGCCTCGAAAAGCCCATTGGGAGGCAGCCTTGCGAGTGGTACGCTACCTCAAGTCAGCTCCTGGTCAAGGCTTATTCTTTTCCTCAAATAGTGATCTTCGGCTACGAGCCTTTTGTGACTCAGATTGGGCCGGGTGTCCACTTACAAGAAGGTCTACTACAGGGTATTGTGTGTTCTTAGGACCTTCTTTAATCTCATGGAGGTCTAAACGTCAGAAAACAGTCTCTCTTTCTTCAGCTGAAGCTGAGTATCGTGCTATGACAGGAGCTTGTTGTGAGTTGACTTGGCTACGTTATTTACTTCAAGACTTGGGGATTTTACACCAGGAAACGGCATTGCTTTATTGTGACAACAAGGCTGCTTTACATATAGCAGCAAATCCAGTGTTTCATGAACGTACAAGACATATAGAAATGGATTGTCACTATATCAGGGATAAGATCCAAGATGGTTCAGTGGAGACACGGTTTGTGAGTTCTGGAAATCAATTGGCTGATGTTTTGACTAAAGCTCTTGGCAAGGAAGACTTCATGCTTATGATTCGCAAGTTGGGCGTACAAGATATCCACTCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

1001

Amino Acids

111.13

Weight (kDa)

9.41

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 30 - 76 5.1e-23 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 56 - 225 1.2e-09 gag-polypeptide of LTR copia-type
Retrotrans_gag PF03732 92 - 193 2.5e-07 Retrotransposon gag protein
Pol_BBD PF22936 398 - 460 1.3e-07 Pol polyprotein, beta-barrel domain
RVT_2 PF07727 518 - 761 2e-75 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1617, 2234
Acc36I ACCTGC 2 cut(s) 1685, 2403
AccB7I CCANNNNNTGG 1 cut(s) 1527
AccBSI CCGCTC 1 cut(s) 1997
AccI GTMKAC 2 cut(s) 1753, 2579
AccII CGCG 3 cut(s) 597, 823, 989
AclI AACGTT 1 cut(s) 673
AclWI GGATC 9 cut(s) 236, 302, 869, 955, 1054, 1389, 2078, 2318, 2860
AcoI YGGCCR 2 cut(s) 733, 1671
AcsI RAATTY 5 cut(s) 414, 781, 955, 2110, 2196
AcuI CTGAAG 3 cut(s) 267, 2643, 2685
AfaI GTAC 7 cut(s) 862, 1336, 1359, 1558, 2466, 2824, 2982
AfeI AGCGCT 1 cut(s) 706
AgeI ACCGGT 1 cut(s) 791
AhdI GACNNNNNGTC 1 cut(s) 887
AjuI GAANNNNNNNTTGG 4 cut(s) 885, 917, 2425, 2457
Alw21I GWGCWC 1 cut(s) 1235
Alw26I GTCTC 9 cut(s) 73, 124, 132, 417, 572, 1854, 1864, 2653, 2879
AlwI GGATC 9 cut(s) 236, 302, 869, 955, 1054, 1389, 2078, 2318, 2860
AlwNI CAGNNNCTG 1 cut(s) 2486
Aor51HI AGCGCT 1 cut(s) 706
AoxI GGCC 7 cut(s) 733, 851, 1068, 1659, 1671, 2378, 2553
ApoI RAATTY 5 cut(s) 414, 781, 955, 2110, 2196
ArsI GACNNNNNNTTYG 4 cut(s) 768, 800, 1390, 1422
AsiGI ACCGGT 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 1965
AspLEI GCGC 5 cut(s) 590, 707, 991, 2214, 2258
AspS9I GGNCC 9 cut(s) 112, 283, 789, 889, 1069, 1660, 1782, 2553, 2606
AsuC2I CCSGG 2 cut(s) 1663, 2557
AsuII TTCGAA 1 cut(s) 724
AvaII GGWCC 6 cut(s) 112, 283, 789, 889, 1782, 2606
BalI TGGCCA 1 cut(s) 1673
BanII GRGCYC 1 cut(s) 532
BarI GAAGNNNNNNTAC 2 cut(s) 2566, 2598
BbsI GAAGAC 1 cut(s) 2955
Bbv12I GWGCWC 1 cut(s) 1235
BccI CCATC 9 cut(s) 31, 37, 235, 559, 1418, 1602, 1631, 1684, 2867
BceAI ACGGC 3 cut(s) 635, 826, 2772
BcgI CGANNNNNNTGC 2 cut(s) 2411, 2445
BcnI CCSGG 2 cut(s) 1663, 2557
BcoDI GTCTC 9 cut(s) 73, 124, 132, 417, 572, 1854, 1864, 2653, 2879
BfaI CTAG 5 cut(s) 116, 1173, 1287, 1950, 1992
BfmI CTRYAG 2 cut(s) 345, 2583
BfoI RGCGCY 2 cut(s) 708, 2259
BfuAI ACCTGC 2 cut(s) 1685, 2403
BglII AGATCT 2 cut(s) 367, 2140
Bme18I GGWCC 6 cut(s) 112, 283, 789, 889, 1782, 2606
BmeRI GACNNNNNGTC 1 cut(s) 887
BmgT120I GGNCC 9 cut(s) 112, 283, 789, 889, 1069, 1660, 1782, 2553, 2606
BmiI GGNNCC 4 cut(s) 529, 890, 1642, 1784
BmsI GCATC 8 cut(s) 260, 527, 790, 1035, 1540, 2192, 2230, 2431
BpiI GAAGAC 1 cut(s) 2955
BpmI CTGGAG 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 724
BpuEI CTTGAG 1 cut(s) 2459
BpuMI CCSGG 2 cut(s) 1663, 2557
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 4 cut(s) 1705, 1735, 2876, 2906
Bse118I RCCGGY 2 cut(s) 735, 791
Bse1I ACTGG 4 cut(s) 983, 1452, 2080, 2807
Bse3DI GCAATG 5 cut(s) 280, 400, 678, 2086, 2759
BseGI GGATG 7 cut(s) 29, 230, 499, 805, 928, 1837, 2183
BseMI GCAATG 5 cut(s) 280, 400, 678, 2086, 2759
BseMII CTCAG 6 cut(s) 451, 1056, 1322, 2301, 2559, 2661
BseNI ACTGG 4 cut(s) 983, 1452, 2080, 2807
BseRI GAGGAG 1 cut(s) 1895
BseX3I CGGCCG 1 cut(s) 733
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 3 cut(s) 597, 823, 989
Bsh1285I CGRYCG 3 cut(s) 736, 740, 766
BshFI GGCC 7 cut(s) 735, 853, 1070, 1661, 1673, 2380, 2555
BshTI ACCGGT 1 cut(s) 791
BsiEI CGRYCG 3 cut(s) 736, 740, 766
BsiHKAI GWGCWC 1 cut(s) 1235
BsiSI CCGG 4 cut(s) 736, 792, 1663, 2556
BslFI GGGAC 4 cut(s) 2, 1576, 1756, 1768
BsmAI GTCTC 9 cut(s) 73, 124, 132, 417, 572, 1854, 1864, 2653, 2879
BsmFI GGGAC 4 cut(s) 2, 1576, 1756, 1768
BsnI GGCC 7 cut(s) 735, 853, 1070, 1661, 1673, 2380, 2555
Bsp119I TTCGAA 1 cut(s) 724
Bsp1286I GDGCHC 2 cut(s) 532, 1235
Bsp19I CCATGG 3 cut(s) 714, 1819, 2277
BspANI GGCC 7 cut(s) 735, 853, 1070, 1661, 1673, 2380, 2555
BspCNI CTCAG 6 cut(s) 450, 1057, 1323, 2302, 2558, 2662
BspFNI CGCG 3 cut(s) 597, 823, 989
BspHI TCATGA 2 cut(s) 352, 2815
BspLI GGNNCC 4 cut(s) 529, 890, 1642, 1784
BspMI ACCTGC 2 cut(s) 1685, 2403
BspPI GGATC 9 cut(s) 236, 302, 869, 955, 1054, 1389, 2078, 2318, 2860
BspT104I TTCGAA 1 cut(s) 724
BsrBI CCGCTC 1 cut(s) 1997
BsrDI GCAATG 5 cut(s) 280, 400, 678, 2086, 2759
BsrFI RCCGGY 2 cut(s) 735, 791
BsrI ACTGG 4 cut(s) 983, 1452, 2080, 2807
BssAI RCCGGY 2 cut(s) 735, 791
BssT1I CCWWGG 4 cut(s) 714, 1674, 1819, 2277
Bst4CI ACNGT 9 cut(s) 307, 329, 1362, 1556, 1744, 2041, 2371, 2647, 2892
Bst6I CTCTTC 6 cut(s) 152, 476, 657, 1029, 1388, 1830
BstAPI GCANNNNNTGC 1 cut(s) 1766
BstBI TTCGAA 1 cut(s) 724
BstDEI CTNAG 8 cut(s) 371, 437, 1065, 1331, 2310, 2545, 2602, 2670
BstDSI CCRYGG 5 cut(s) 595, 714, 1774, 1819, 2277
BstEII GGTNACC 1 cut(s) 770
BstENI CCTNNNNNAGG 1 cut(s) 2490
BstF5I GGATG 7 cut(s) 29, 230, 499, 805, 928, 1837, 2183
BstFNI CGCG 3 cut(s) 597, 823, 989
BstH2I RGCGCY 2 cut(s) 708, 2259
BstHHI GCGC 5 cut(s) 590, 707, 991, 2214, 2258
BstMAI GTCTC 9 cut(s) 73, 124, 132, 417, 572, 1854, 1864, 2653, 2879
BstMCI CGRYCG 3 cut(s) 736, 740, 766
BstMWI GCNNNNNNNGC 9 cut(s) 594, 647, 653, 716, 759, 1279, 1514, 1766, 2976
BstNSI RCATGY 1 cut(s) 900
BstPI GGTNACC 1 cut(s) 770
BstSFI CTRYAG 2 cut(s) 345, 2583
BstUI CGCG 3 cut(s) 597, 823, 989
BstV2I GAAGAC 1 cut(s) 2955
BstX2I RGATCY 5 cut(s) 367, 1381, 2140, 2323, 2865
BstYI RGATCY 5 cut(s) 367, 1381, 2140, 2323, 2865
BstZI CGGCCG 1 cut(s) 733
BsuRI GGCC 7 cut(s) 735, 853, 1070, 1661, 1673, 2380, 2555
BtgI CCRYGG 5 cut(s) 595, 714, 1774, 1819, 2277
BtgZI GCGATG 2 cut(s) 412, 1520
BtsCI GGATG 7 cut(s) 29, 230, 499, 805, 928, 1837, 2183
BtsI GCAGTG 2 cut(s) 972, 1946
BtsIMutI CAGTG 7 cut(s) 303, 972, 1445, 1946, 2376, 2814, 2886
BveI ACCTGC 2 cut(s) 1685, 2403
CaiI CAGNNNCTG 1 cut(s) 2486
CciI TCATGA 2 cut(s) 352, 2815
CfoI GCGC 5 cut(s) 590, 707, 991, 2214, 2258
Cfr10I RCCGGY 2 cut(s) 735, 791
Cfr13I GGNCC 9 cut(s) 112, 283, 789, 889, 1069, 1660, 1782, 2553, 2606
Cfr42I CCGCGG 1 cut(s) 598
CpoI CGGWCCG 1 cut(s) 789
CseI GACGC 1 cut(s) 1758
CsiI ACCWGGT 1 cut(s) 1008
Csp6I GTAC 7 cut(s) 861, 1335, 1358, 1557, 2465, 2823, 2981
CspAI ACCGGT 1 cut(s) 791
CspI CGGWCCG 1 cut(s) 789
CviQI GTAC 7 cut(s) 861, 1335, 1358, 1557, 2465, 2823, 2981
DdeI CTNAG 8 cut(s) 371, 437, 1065, 1331, 2310, 2545, 2602, 2670
DraI TTTAAA 1 cut(s) 2292
DriI GACNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 2 cut(s) 733, 1671
EagI CGGCCG 1 cut(s) 733
Eam1104I CTCTTC 6 cut(s) 152, 476, 657, 1029, 1388, 1830
Eam1105I GACNNNNNGTC 1 cut(s) 887
EarI CTCTTC 6 cut(s) 152, 476, 657, 1029, 1388, 1830
EclXI CGGCCG 1 cut(s) 733
Eco130I CCWWGG 4 cut(s) 714, 1674, 1819, 2277
Eco24I GRGCYC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 2989
Eco47I GGWCC 6 cut(s) 112, 283, 789, 889, 1782, 2606
Eco47III AGCGCT 1 cut(s) 706
Eco52I CGGCCG 1 cut(s) 733
Eco57I CTGAAG 3 cut(s) 267, 2643, 2685
Eco91I GGTNACC 1 cut(s) 770
EcoNI CCTNNNNNAGG 1 cut(s) 2490
EcoO109I RGGNCCY 1 cut(s) 2606
EcoO65I GGTNACC 1 cut(s) 770
EcoRV GATATC 1 cut(s) 2989
EcoT14I CCWWGG 4 cut(s) 714, 1674, 1819, 2277
EcoT22I ATGCAT 3 cut(s) 1267, 1305, 2424
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 4 cut(s) 714, 1674, 1819, 2277
FalI AAGNNNNNCTT 2 cut(s) 2936, 2968
FaqI GGGAC 4 cut(s) 2, 1576, 1756, 1768
FauI CCCGC 4 cut(s) 602, 828, 1193, 1199
FblI GTMKAC 2 cut(s) 1753, 2579
FokI GGATG 7 cut(s) 16, 217, 506, 812, 915, 1844, 2170
FriOI GRGCYC 1 cut(s) 532
FspBI CTAG 5 cut(s) 116, 1173, 1287, 1950, 1992
GlaI GCGC 5 cut(s) 589, 706, 990, 2213, 2257
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 906
HaeII RGCGCY 2 cut(s) 708, 2259
HaeIII GGCC 7 cut(s) 735, 853, 1070, 1661, 1673, 2380, 2555
HapII CCGG 4 cut(s) 736, 792, 1663, 2556
HgaI GACGC 1 cut(s) 1758
HhaI GCGC 5 cut(s) 590, 707, 991, 2214, 2258
Hin6I GCGC 5 cut(s) 588, 705, 989, 2212, 2256
HinP1I GCGC 5 cut(s) 588, 705, 989, 2212, 2256
HincII GTYRAC 3 cut(s) 301, 1804, 2706
HindII GTYRAC 3 cut(s) 301, 1804, 2706
HindIII AAGCTT 1 cut(s) 1929
HinfI GANTC 5 cut(s) 616, 692, 1130, 2543, 2965
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 4 cut(s) 736, 792, 1663, 2556
Hpy166II GTNNAC 6 cut(s) 301, 1754, 1804, 2564, 2580, 2706
Hpy8I GTNNAC 6 cut(s) 301, 1754, 1804, 2564, 2580, 2706
HpyCH4III ACNGT 9 cut(s) 307, 329, 1362, 1556, 1744, 2041, 2371, 2647, 2892
HpyCH4IV ACGT 7 cut(s) 15, 673, 1420, 2284, 2635, 2716, 2821
HpyF10VI GCNNNNNNNGC 9 cut(s) 594, 647, 653, 716, 759, 1279, 1514, 1766, 2976
HpyF3I CTNAG 8 cut(s) 371, 437, 1065, 1331, 2310, 2545, 2602, 2670
HpySE526I ACGT 7 cut(s) 15, 673, 1420, 2284, 2635, 2716, 2821
HspAI GCGC 5 cut(s) 588, 705, 989, 2212, 2256
KspAI GTTAAC 1 cut(s) 301
KspI CCGCGG 1 cut(s) 598
LmnI GCTCC 6 cut(s) 229, 527, 1456, 1882, 2488, 2690
LweI GCATC 8 cut(s) 260, 527, 790, 1035, 1540, 2192, 2230, 2431
MabI ACCWGGT 1 cut(s) 1008
MaeI CTAG 5 cut(s) 116, 1173, 1287, 1950, 1992
MaeII ACGT 7 cut(s) 15, 673, 1420, 2284, 2635, 2716, 2821
MaeIII GTNAC 8 cut(s) 770, 1153, 1450, 1738, 2313, 2540, 2771, 2846
MbiI CCGCTC 1 cut(s) 1997
MfeI CAATTG 2 cut(s) 1189, 2912
MflI RGATCY 5 cut(s) 367, 1381, 2140, 2323, 2865
MhlI GDGCHC 2 cut(s) 532, 1235
MlsI TGGCCA 1 cut(s) 1673
MluNI TGGCCA 1 cut(s) 1673
MlyI GAGTC 3 cut(s) 701, 1124, 2537
MmeI TCCRAC 2 cut(s) 134, 2329
Mox20I TGGCCA 1 cut(s) 1673
Mph1103I ATGCAT 3 cut(s) 1267, 1305, 2424
MroXI GAANNNNTTC 1 cut(s) 1965
MscI TGGCCA 1 cut(s) 1673
MseI TTAA 9 cut(s) 180, 300, 572, 1377, 2069, 2106, 2291, 2408, 2615
MslI CAYNNNNRTG 2 cut(s) 1688, 2960
Msp20I TGGCCA 1 cut(s) 1673
MspA1I CMGCKG 3 cut(s) 597, 689, 2663
MspI CCGG 4 cut(s) 736, 792, 1663, 2556
MunI CAATTG 2 cut(s) 1189, 2912
MvnI CGCG 3 cut(s) 597, 823, 989
MwoI GCNNNNNNNGC 9 cut(s) 594, 647, 653, 716, 759, 1279, 1514, 1766, 2976
NciI CCSGG 2 cut(s) 1663, 2557
NcoI CCATGG 3 cut(s) 714, 1819, 2277
NlaIV GGNNCC 4 cut(s) 529, 890, 1642, 1784
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 5 cut(s) 770, 1450, 2540, 2771, 2846
NsiI ATGCAT 3 cut(s) 1267, 1305, 2424
NspI RCATGY 1 cut(s) 900
NspV TTCGAA 1 cut(s) 724
PagI TCATGA 2 cut(s) 352, 2815
PasI CCCWGGG 1 cut(s) 1583
PcsI WCGNNNNNNNCGW 2 cut(s) 772, 1397
PdmI GAANNNNTTC 1 cut(s) 1965
PfeI GAWTC 2 cut(s) 616, 2965
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 1527
PfoI TCCNGGA 1 cut(s) 877
PinAI ACCGGT 1 cut(s) 791
PleI GAGTC 3 cut(s) 700, 1124, 2537
PpsI GAGTC 3 cut(s) 700, 1124, 2537
PpuMI RGGWCCY 1 cut(s) 2606
PsiI TTATAA 2 cut(s) 1617, 2234
Psp1406I AACGTT 1 cut(s) 673
Psp5II RGGWCCY 1 cut(s) 2606
PspEI GGTNACC 1 cut(s) 770
PspFI CCCAGC 1 cut(s) 38
PspN4I GGNNCC 4 cut(s) 529, 890, 1642, 1784
PspPI GGNCC 9 cut(s) 112, 283, 789, 889, 1069, 1660, 1782, 2553, 2606
PspPPI RGGWCCY 1 cut(s) 2606
PsrI GAACNNNNNNTAC 2 cut(s) 2582, 2614
PstNI CAGNNNCTG 1 cut(s) 2486
PsuI RGATCY 5 cut(s) 367, 1381, 2140, 2323, 2865
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 2663
RsaI GTAC 7 cut(s) 862, 1336, 1359, 1558, 2466, 2824, 2982
RsaNI GTAC 7 cut(s) 861, 1335, 1358, 1557, 2465, 2823, 2981
RseI CAYNNNNRTG 2 cut(s) 1688, 2960
Rsr2I CGGWCCG 1 cut(s) 789
RsrII CGGWCCG 1 cut(s) 789
SacII CCGCGG 1 cut(s) 598
SaqAI TTAA 9 cut(s) 180, 300, 572, 1377, 2069, 2106, 2291, 2408, 2615
Sau96I GGNCC 9 cut(s) 112, 283, 789, 889, 1069, 1660, 1782, 2553, 2606
SchI GAGTC 3 cut(s) 701, 1124, 2537
SduI GDGCHC 2 cut(s) 532, 1235
SexAI ACCWGGT 1 cut(s) 1008
SfaNI GCATC 8 cut(s) 260, 527, 790, 1035, 1540, 2192, 2230, 2431
SfcI CTRYAG 2 cut(s) 345, 2583
Sfr303I CCGCGG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 724
SgrBI CCGCGG 1 cut(s) 598
SinI GGWCC 6 cut(s) 112, 283, 789, 889, 1782, 2606
SmiMI CAYNNNNRTG 2 cut(s) 1688, 2960
SmlI CTYRAG 1 cut(s) 2474
SmoI CTYRAG 1 cut(s) 2474
SspMI CTAG 5 cut(s) 116, 1173, 1287, 1950, 1992
StyI CCWWGG 4 cut(s) 714, 1674, 1819, 2277
TaaI ACNGT 9 cut(s) 307, 329, 1362, 1556, 1744, 2041, 2371, 2647, 2892
TaiI ACGT 7 cut(s) 18, 676, 1423, 2287, 2638, 2719, 2824
TaqI TCGA 8 cut(s) 724, 740, 838, 1133, 1606, 1797, 1969, 2431
TaqII GACCGA 1 cut(s) 789
TatI WGTACW 1 cut(s) 1357
TauI GCSGC 2 cut(s) 735, 856
TfiI GAWTC 2 cut(s) 616, 2965
Tru1I TTAA 9 cut(s) 180, 300, 572, 1377, 2069, 2106, 2291, 2408, 2615
Tru9I TTAA 9 cut(s) 180, 300, 572, 1377, 2069, 2106, 2291, 2408, 2615
TscAI CASTG 7 cut(s) 310, 979, 1452, 1946, 2376, 2814, 2886
TseFI GTSAC 5 cut(s) 770, 1450, 2540, 2771, 2846
Tsp45I GTSAC 5 cut(s) 770, 1450, 2540, 2771, 2846
TspDTI ATGAA 9 cut(s) 279, 510, 629, 667, 1848, 2390, 2804, 2832, 2944
TspGWI ACGGA 2 cut(s) 1469, 1736
TspRI CASTG 7 cut(s) 310, 979, 1452, 1946, 2376, 2814, 2886
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 1527
VpaK11BI GGWCC 6 cut(s) 112, 283, 789, 889, 1782, 2606
XagI CCTNNNNNAGG 1 cut(s) 2490
XapI RAATTY 5 cut(s) 414, 781, 955, 2110, 2196
XbaI TCTAGA 3 cut(s) 1172, 1949, 1991
XceI RCATGY 1 cut(s) 900
XmiI GTMKAC 2 cut(s) 1753, 2579
XmnI GAANNNNTTC 1 cut(s) 1965
XspI CTAG 5 cut(s) 116, 1173, 1287, 1950, 1992
Zsp2I ATGCAT 3 cut(s) 1267, 1305, 2424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.