FvH4_5g29995

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000071
Physical Location & Seq
Forward (+)
20956024 .. 20958141
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29995.t1

Sequence Viewer

Length: 1836 bp
ATGGTGGCCGACATGAGGACCCCACCAGCTGAGCCGCACATCTCTGAGCCAAGCCAAGGTTCTTCAGGTGGAGAAACACATGGAACCCGTGTCTATGCTGAGCCGCGCATCCCTGAGCCGAGTCGACCAAGCCAAGCTGGGACCCCAACTGAAGAGGCAATTGCACGTGTCGACAGTGACACTGGTCCCGCTCTTCAGCTGACCTCTGATCCTCCGACGCGTGTCAACAGCGACACCGGTTCTACACTTGTCCCTGCAACAGTCTCGAGACCCACAGATTTGACAGAAAATTGTCCTGAAAATGCTTCGTCAGATATTTTCCCTTTCTCAACACCATTAACCCAAGAATCTGCTGCGAATGTCCCTCCTCAGGATGCAATGACGGATCCCAAGTGGACTCAGGCGATGAACGAAGAATTAGAGGCATTACAGAAAAACTCGACTTGGGATATTGTGCCTAAACCAGCTGGGAAGAAGACAGTTGGATGTCGTTGTGTATTCACCGTAAAATTGAAAGCAGATGGGAGCATTGACAGGTATAAAGCACGGTTGGTTGCCAAGGGATACACCCAGCGGTATGGCATTGATTATGAAGAAACGTTTGCGTCTGTAGCAAAGATCAACACTAATGCTTTCCTCAATGGAAACTTGGAGGAAGAGGTGTATATGGACATGCCTCCAGGAGTCAAAAGTAGACCGTGTGATGCTGGCAAGGTTTGTAAGTTGAAGAAGTCCTTGTATGGTTTGAAGCAATCTCCTAGAGCTTGGTTTGGAAGATTCTCCAAATCAATGAAGACATTTGGTTATAAACAAAGCAACTTGGATCACACTTTGTTCATCAAGCGTAACCAGGGTAAGATCACCGCTCTGATTGTGTATGTTGATGATATGATTGTCACAGGGGATGACCCAAAGGAGATGGAGGCTCTACAAAAGTATCTTTCAAAGGAGTTTGAGATGAAGGACCTTGGACAGTTGAAGTATTTTCTCGGAATTGAAGTTGCAAGGTCAAAGAATGGAATTTCTTTATCCCAGCGAAAGTATGTACTTGACTTGTTAGCTGAAACCGGCATGCTTGACTGCAAGCCTGTTGAGACACCAATTGAGATGAATCACAACCTTGCCATCTATCCAAATCAAGTTCCAACTGATAAACGAAGGTACCAACGTCTAGTAGGGAGACTTATTTATCTTTCTCATACTAGACCTGATATTGCTTATGTTGTGAGTGTGCTTAGTCAATTTATGCATTATCCCAACGAAGAGCATATGGATGCAGTGTATTGTATTCTAAAGTATCTTAAGATGGCACCTGGAAAAGGTTTGTTGTTTGAAAAGAAGAGGGGTGAATTGGAAGTTGTAGGGTACACCGATGTTGATTGGGCTGGTGATAAGACAGACAGACGATCTACATCTGGGTATTTTACATTTGTTGGAGGAAACCTTGTAACTTGGCATAGTAAGAAACAGAAGGTTGTTGCCAGGTCAAGTGCTGAAGCAGAATTTCGAGGTATGGCACATGAAGTTTGTGAGATGTTATGGATTCGTAATGTGTTGAAAGAATTGGGTTTTAAACTCAAACAACCTATGGCCTTGCATTGTGATAACACGTCTGCAATTGAAATTTCTCATAATCTTGTTGAACATGACCGGACCAAACATGTGGAGGTAGATCGGCATTTTATCAAGGAAAACTTGGACAGGAAAATAATATGTTTCCCTTTTGTGTATACAGAAGACCAATTGGCAGATGTTCTTACGAAAAGAGTATCAAGGAAAGTGTTTGACGACTCAGTTGGCAAGTTGGGCATGATTGATATCTATGCACCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

612

Amino Acids

68.71

Weight (kDa)

7.56

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 146 - 208 6.2e-13 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 210 - 369 4.8e-43 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
Acc65I GGTACC 1 cut(s) 1161
AccB1I GGYRCC 2 cut(s) 1161, 1309
AccBSI CCGCTC 2 cut(s) 191, 866
AccI GTMKAC 4 cut(s) 124, 171, 694, 1730
AccII CGCG 2 cut(s) 106, 220
AciI CCGC 5 cut(s) 35, 104, 189, 574, 864
AclI AACGTT 1 cut(s) 599
AclWI GGATC 4 cut(s) 203, 380, 393, 831
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 1020, 1502, 1623
AcuI CTGAAG 4 cut(s) 48, 171, 179, 1515
AcvI CACGTG 1 cut(s) 167
AfaI GTAC 3 cut(s) 1047, 1163, 1367
AfiI CCNNNNNNNGG 4 cut(s) 15, 56, 370, 1319
AflII CTTAAG 1 cut(s) 1301
AflIII ACRYGT 4 cut(s) 166, 218, 1608, 1660
AgeI ACCGGT 1 cut(s) 236
AjiI CACGTC 1 cut(s) 1611
AjnI CCWGG 4 cut(s) 679, 849, 1312, 1481
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 6 cut(s) 29, 137, 199, 467, 764, 1061
AluI AGCT 6 cut(s) 29, 137, 199, 467, 764, 1061
Alw26I GTCTC 4 cut(s) 262, 268, 1088, 1174
AlwI GGATC 4 cut(s) 203, 380, 393, 831
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 2 cut(s) 6, 1590
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 3 cut(s) 1020, 1502, 1623
AsiGI ACCGGT 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 1161
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 5 cut(s) 18, 141, 185, 964, 1653
AsuHPI GGTGA 4 cut(s) 493, 853, 1358, 1400
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 5 cut(s) 18, 141, 185, 964, 1653
AxyI CCTNAGG 1 cut(s) 369
BaeI ACNNNNGTAYC 6 cut(s) 920, 953, 1145, 1153, 1178, 1186
BamHI GGATCC 1 cut(s) 385
BanI GGYRCC 2 cut(s) 1161, 1309
BbrPI CACGTG 1 cut(s) 167
BbsI GAAGAC 3 cut(s) 482, 800, 1743
BbvI GCAGC 1 cut(s) 340
BccI CCATC 4 cut(s) 515, 913, 1133, 1300
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BciT130I CCWGG 4 cut(s) 681, 851, 1314, 1483
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 4 cut(s) 262, 268, 1088, 1174
BfaI CTAG 3 cut(s) 759, 1172, 1203
BfmI CTRYAG 1 cut(s) 609
BfrI CTTAAG 1 cut(s) 1301
BfuI GTATCC 1 cut(s) 557
BisI GCNGC 3 cut(s) 35, 104, 354
BlpI GCTNAGC 2 cut(s) 30, 99
BlsI GCNGC 3 cut(s) 36, 105, 355
Bme1390I CCNGG 4 cut(s) 681, 851, 1314, 1483
Bme18I GGWCC 5 cut(s) 18, 141, 185, 964, 1653
BmeT110I CYCGRG 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 1611
BmgT120I GGNCC 5 cut(s) 18, 141, 185, 964, 1653
BmiI GGNNCC 8 cut(s) 20, 85, 142, 143, 187, 387, 1163, 1311
BmrFI CCNGG 4 cut(s) 681, 851, 1314, 1483
BmsI GCATC 4 cut(s) 117, 364, 694, 1264
BoxI GACNNNNGTC 2 cut(s) 183, 221
BpiI GAAGAC 3 cut(s) 482, 800, 1743
BpmI CTGGAG 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 114
Bpu1102I GCTNAGC 2 cut(s) 30, 99
BsaAI YACGTR 1 cut(s) 167
BsaBI GATNNNNATC 2 cut(s) 1411, 1817
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 4 cut(s) 55, 558, 850, 967
BsaWI WCCGGW 2 cut(s) 236, 1650
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 56, 370, 1319
Bse118I RCCGGY 2 cut(s) 236, 1067
Bse1I ACTGG 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 2 cut(s) 1411, 1817
BseBI CCWGG 4 cut(s) 681, 851, 1314, 1483
BseDI CCNNGG 4 cut(s) 55, 558, 850, 967
BseGI GGATG 5 cut(s) 108, 379, 491, 910, 1279
BseJI GATNNNNATC 2 cut(s) 1411, 1817
BseLI CCNNNNNNNGG 4 cut(s) 15, 56, 370, 1319
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 7 cut(s) 21, 36, 90, 105, 383, 413, 1806
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 4 cut(s) 137, 467, 570, 1032
Bsh1236I CGCG 2 cut(s) 106, 220
BshFI GGCC 2 cut(s) 8, 1592
BshNI GGYRCC 2 cut(s) 1161, 1309
BshTI ACCGGT 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 3 cut(s) 237, 1068, 1651
BslFI GGGAC 4 cut(s) 154, 171, 236, 347
BslI CCNNNNNNNGG 4 cut(s) 15, 56, 370, 1319
BsmAI GTCTC 4 cut(s) 262, 268, 1088, 1174
BsmFI GGGAC 4 cut(s) 154, 171, 236, 347
BsnI GGCC 2 cut(s) 8, 1592
Bso31I GGTCTC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 265
Bsp143I GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
Bsp1720I GCTNAGC 2 cut(s) 30, 99
BspACI CCGC 5 cut(s) 35, 104, 189, 574, 864
BspANI GGCC 2 cut(s) 8, 1592
BspCNI CTCAG 7 cut(s) 22, 37, 91, 106, 382, 412, 1805
BspFNI CGCG 2 cut(s) 106, 220
BspLI GGNNCC 8 cut(s) 20, 85, 142, 143, 187, 387, 1163, 1311
BspPI GGATC 4 cut(s) 203, 380, 393, 831
BspQI GCTCTTC 2 cut(s) 198, 1257
BspT107I GGYRCC 2 cut(s) 1161, 1309
BspTI CTTAAG 1 cut(s) 1301
BspTNI GGTCTC 1 cut(s) 262
BsrBI CCGCTC 2 cut(s) 191, 866
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 2 cut(s) 236, 1067
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 2 cut(s) 236, 1067
BssECI CCNNGG 4 cut(s) 55, 558, 850, 967
BssMI GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
BssNAI GTATAC 1 cut(s) 1731
BssT1I CCWWGG 3 cut(s) 55, 558, 967
Bst1107I GTATAC 1 cut(s) 1731
Bst2UI CCWGG 4 cut(s) 681, 851, 1314, 1483
Bst4CI ACNGT 7 cut(s) 176, 262, 481, 505, 549, 699, 975
Bst6I CTCTTC 5 cut(s) 147, 198, 651, 1257, 1334
BstAFI CTTAAG 1 cut(s) 1301
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 709, 1073, 1085
BstDEI CTNAG 8 cut(s) 30, 45, 99, 114, 369, 399, 1235, 1792
BstENI CCTNNNNNAGG 1 cut(s) 1317
BstF5I GGATG 5 cut(s) 108, 379, 491, 910, 1279
BstFNI CGCG 2 cut(s) 106, 220
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 7 cut(s) 211, 388, 621, 826, 861, 1409, 1675
BstMAI GTCTC 4 cut(s) 262, 268, 1088, 1174
BstMBI GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
BstMWI GCNNNNNNNGC 2 cut(s) 611, 1806
BstNI CCWGG 4 cut(s) 681, 851, 1314, 1483
BstNSI RCATGY 3 cut(s) 676, 1075, 1664
BstPAI GACNNNNGTC 2 cut(s) 183, 221
BstSCI CCNGG 4 cut(s) 679, 849, 1312, 1481
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 2 cut(s) 106, 220
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 3 cut(s) 482, 800, 1743
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 2 cut(s) 578, 1663
BstYI RGATCY 1 cut(s) 385
BstZ17I GTATAC 1 cut(s) 1731
Bsu36I CCTNAGG 1 cut(s) 369
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 2 cut(s) 8, 1592
BtgZI GCGATG 1 cut(s) 419
BtrI CACGTC 1 cut(s) 1611
BtsCI GGATG 5 cut(s) 108, 379, 491, 910, 1279
BtsI GCAGTG 1 cut(s) 1284
BtsIMutI CAGTG 3 cut(s) 180, 181, 1284
Cac8I GCNNGC 3 cut(s) 709, 1073, 1085
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 2 cut(s) 236, 1067
Cfr13I GGNCC 5 cut(s) 18, 141, 185, 964, 1653
CseI GACGC 2 cut(s) 226, 594
Csp6I GTAC 3 cut(s) 1046, 1162, 1366
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 8 cut(s) 13, 80, 673, 1072, 1520, 1646, 1661, 1810
CviQI GTAC 3 cut(s) 1046, 1162, 1366
DdeI CTNAG 8 cut(s) 30, 45, 99, 114, 369, 399, 1235, 1792
DpnI GATC 7 cut(s) 210, 387, 620, 825, 860, 1408, 1674
DpnII GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
DraI TTTAAA 1 cut(s) 1573
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 5 cut(s) 147, 198, 651, 1257, 1334
EarI CTCTTC 5 cut(s) 147, 198, 651, 1257, 1334
Eco130I CCWWGG 3 cut(s) 55, 558, 967
Eco31I GGTCTC 1 cut(s) 262
Eco32I GATATC 1 cut(s) 1819
Eco47I GGWCC 5 cut(s) 18, 141, 185, 964, 1653
Eco57I CTGAAG 4 cut(s) 48, 171, 179, 1515
Eco72I CACGTG 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 1317
EcoO109I RGGNCCY 3 cut(s) 18, 141, 964
EcoRII CCWGG 4 cut(s) 679, 849, 1312, 1481
EcoRV GATATC 1 cut(s) 1819
EcoT14I CCWWGG 3 cut(s) 55, 558, 967
EcoT22I ATGCAT 1 cut(s) 1251
ErhI CCWWGG 3 cut(s) 55, 558, 967
FaeI CATG 8 cut(s) 16, 83, 676, 1075, 1523, 1649, 1664, 1813
FalI AAGNNNNNCTT 4 cut(s) 719, 751, 1679, 1711
FaqI GGGAC 4 cut(s) 154, 171, 236, 347
FatI CATG 8 cut(s) 12, 79, 672, 1071, 1519, 1645, 1660, 1809
FauI CCCGC 1 cut(s) 196
FauNDI CATATG 1 cut(s) 1269
FblI GTMKAC 4 cut(s) 124, 171, 694, 1730
Fnu4HI GCNGC 3 cut(s) 35, 104, 354
FokI GGATG 5 cut(s) 95, 386, 498, 917, 1286
Fsp4HI GCNGC 3 cut(s) 35, 104, 354
FspBI CTAG 3 cut(s) 759, 1172, 1203
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 35, 104, 354
GsaI CCCAGC 4 cut(s) 141, 471, 574, 1036
GsuI CTGGAG 1 cut(s) 663
HaeIII GGCC 2 cut(s) 8, 1592
HapII CCGG 3 cut(s) 237, 1068, 1651
HgaI GACGC 2 cut(s) 226, 594
HhaI GCGC 1 cut(s) 108
Hin1II CATG 8 cut(s) 16, 83, 676, 1075, 1523, 1649, 1664, 1813
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 3 cut(s) 125, 172, 226
HindII GTYRAC 3 cut(s) 125, 172, 226
HinfI GANTC 8 cut(s) 121, 347, 397, 684, 777, 1111, 1543, 1790
HpaII CCGG 3 cut(s) 237, 1068, 1651
HphI GGTGA 4 cut(s) 493, 853, 1358, 1400
Hpy166II GTNNAC 7 cut(s) 125, 172, 226, 396, 695, 1368, 1731
Hpy188I TCNGA 6 cut(s) 46, 208, 216, 313, 870, 992
Hpy188III TCNNGA 4 cut(s) 265, 267, 296, 371
Hpy8I GTNNAC 7 cut(s) 125, 172, 226, 396, 695, 1368, 1731
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 955, 1152, 1465
HpyCH4III ACNGT 7 cut(s) 176, 262, 481, 505, 549, 699, 975
HpyCH4IV ACGT 4 cut(s) 166, 599, 1168, 1610
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 1806
HpyF3I CTNAG 8 cut(s) 30, 45, 99, 114, 369, 399, 1235, 1792
HpySE526I ACGT 4 cut(s) 166, 599, 1168, 1610
Hsp92II CATG 8 cut(s) 16, 83, 676, 1075, 1523, 1649, 1664, 1813
HspAI GCGC 1 cut(s) 106
KflI GGGWCCC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 1165
Kzo9I GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
LguI GCTCTTC 2 cut(s) 198, 1257
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 4 cut(s) 117, 364, 694, 1264
MaeI CTAG 3 cut(s) 759, 1172, 1203
MaeII ACGT 4 cut(s) 166, 599, 1168, 1610
MaeIII GTNAC 4 cut(s) 176, 845, 895, 1447
MalI GATC 7 cut(s) 210, 387, 620, 825, 860, 1408, 1674
MbiI CCGCTC 2 cut(s) 191, 866
MboI GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
MfeI CAATTG 4 cut(s) 159, 1101, 1617, 1742
MflI RGATCY 1 cut(s) 385
MluI ACGCGT 1 cut(s) 218
MlyI GAGTC 4 cut(s) 130, 391, 693, 1784
MmeI TCCRAC 4 cut(s) 239, 463, 1169, 1414
Mph1103I ATGCAT 1 cut(s) 1251
MseI TTAA 3 cut(s) 338, 1302, 1572
MslI CAYNNNNRTG 1 cut(s) 1272
MspA1I CMGCKG 4 cut(s) 29, 199, 467, 574
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 3 cut(s) 237, 1068, 1651
MspR9I CCNGG 4 cut(s) 681, 851, 1314, 1483
MunI CAATTG 4 cut(s) 159, 1101, 1617, 1742
MvaI CCWGG 4 cut(s) 681, 851, 1314, 1483
MvnI CGCG 2 cut(s) 106, 220
MwoI GCNNNNNNNGC 2 cut(s) 611, 1806
NdeI CATATG 1 cut(s) 1269
NdeII GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
NlaIII CATG 8 cut(s) 16, 83, 676, 1075, 1523, 1649, 1664, 1813
NlaIV GGNNCC 8 cut(s) 20, 85, 142, 143, 187, 387, 1163, 1311
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 176, 895
NsiI ATGCAT 1 cut(s) 1251
NspI RCATGY 3 cut(s) 676, 1075, 1664
PaeI GCATGC 1 cut(s) 1075
PaeR7I CTCGAG 1 cut(s) 265
PciI ACATGT 1 cut(s) 1660
PciSI GCTCTTC 2 cut(s) 198, 1257
PfeI GAWTC 4 cut(s) 347, 777, 1111, 1543
PfoI TCCNGGA 1 cut(s) 679
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 3 cut(s) 36, 105, 355
PleI GAGTC 4 cut(s) 129, 391, 692, 1784
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 4 cut(s) 129, 391, 692, 1784
Ppu21I YACGTR 1 cut(s) 167
PpuMI RGGWCCY 3 cut(s) 18, 141, 964
PscI ACATGT 1 cut(s) 1660
PshAI GACNNNNGTC 2 cut(s) 183, 221
PsiI TTATAA 1 cut(s) 807
Psp1406I AACGTT 1 cut(s) 599
Psp5II RGGWCCY 3 cut(s) 18, 141, 964
Psp6I CCWGG 4 cut(s) 679, 849, 1312, 1481
PspCI CACGTG 1 cut(s) 167
PspFI CCCAGC 4 cut(s) 137, 467, 570, 1032
PspGI CCWGG 4 cut(s) 679, 849, 1312, 1481
PspN4I GGNNCC 8 cut(s) 20, 85, 142, 143, 187, 387, 1163, 1311
PspPI GGNCC 5 cut(s) 18, 141, 185, 964, 1653
PspPPI RGGWCCY 3 cut(s) 18, 141, 964
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 3 cut(s) 29, 199, 467
RsaI GTAC 3 cut(s) 1047, 1163, 1367
RsaNI GTAC 3 cut(s) 1046, 1162, 1366
RseI CAYNNNNRTG 1 cut(s) 1272
SalI GTCGAC 2 cut(s) 123, 170
SapI GCTCTTC 2 cut(s) 198, 1257
SaqAI TTAA 3 cut(s) 338, 1302, 1572
SatI GCNGC 3 cut(s) 35, 104, 354
Sau3AI GATC 7 cut(s) 208, 385, 618, 823, 858, 1406, 1672
Sau96I GGNCC 5 cut(s) 18, 141, 185, 964, 1653
SchI GAGTC 4 cut(s) 130, 391, 693, 1784
ScrFI CCNGG 4 cut(s) 681, 851, 1314, 1483
SfaNI GCATC 4 cut(s) 117, 364, 694, 1264
SfcI CTRYAG 1 cut(s) 609
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 5 cut(s) 18, 141, 185, 964, 1653
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 1272
SmlI CTYRAG 2 cut(s) 265, 1301
SmoI CTYRAG 2 cut(s) 265, 1301
SphI GCATGC 1 cut(s) 1075
SsiI CCGC 5 cut(s) 35, 104, 189, 574, 864
SspMI CTAG 3 cut(s) 759, 1172, 1203
StyD4I CCNGG 4 cut(s) 679, 849, 1312, 1481
StyI CCWWGG 3 cut(s) 55, 558, 967
TaaI ACNGT 7 cut(s) 176, 262, 481, 505, 549, 699, 975
TaiI ACGT 4 cut(s) 169, 602, 1171, 1613
TaqI TCGA 5 cut(s) 124, 171, 266, 440, 1507
TatI WGTACW 1 cut(s) 1045
TauI GCSGC 2 cut(s) 37, 106
TfiI GAWTC 4 cut(s) 347, 777, 1111, 1543
Tru1I TTAA 3 cut(s) 338, 1302, 1572
Tru9I TTAA 3 cut(s) 338, 1302, 1572
TscAI CASTG 3 cut(s) 181, 187, 1284
TseFI GTSAC 2 cut(s) 176, 895
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 2 cut(s) 176, 895
TspDTI ATGAA 7 cut(s) 422, 606, 806, 826, 974, 1124, 1536
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 3 cut(s) 181, 187, 1284
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 5 cut(s) 18, 141, 185, 964, 1653
XagI CCTNNNNNAGG 1 cut(s) 1317
XapI RAATTY 3 cut(s) 1020, 1502, 1623
XceI RCATGY 3 cut(s) 676, 1075, 1664
XhoI CTCGAG 1 cut(s) 265
XmiI GTMKAC 4 cut(s) 124, 171, 694, 1730
XspI CTAG 3 cut(s) 759, 1172, 1203
Zsp2I ATGCAT 1 cut(s) 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.