RchiOBHm_Chr1g0381581

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
66898911 .. 66899384
474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60468

Sequence Viewer

Length: 417 bp
ATGCAGATTGGGCTGGTTCTATCACTGATAGAAGGTCTACTTCAGAAGCAAAAAGTGGTTGCTAGATCCAGTGCAGAAGCTGAGTACAGAGGAATGGCTCATGGAGTATGCGAAATGCTATGGCTTCGTCATTTGATGAAAGACTTGGGATTCAAACCCAAGTATGCTATGAATTTGTATTGTGACAATAAAGCAGCCATTGATATAGCACACAATCCAGTTCAACATGATAGAACAAAACATGTTGAAGTGGATCGACATTTCATCAAGGAGAAGTTGGAGTCAGAAACCATTAACATGCCACATGTGCGTACTGAAGATCAACTTGCAGATATCCTGACCAAAGCTGTTTCTGGAAAAGTGTTCCACAGCTCACTAGACAAGTTGGGTATGCGAGACATCTATTCCCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.74

Weight (kDa)

7.84

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 37
AclWI GGATC 2 cut(s) 60, 261
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 26, 336
AfaI GTAC 2 cut(s) 86, 313
AflIII ACRYGT 2 cut(s) 241, 304
AgsI TTSAA 3 cut(s) 154, 224, 248
AluBI AGCT 3 cut(s) 80, 347, 372
AluI AGCT 3 cut(s) 80, 347, 372
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 2 cut(s) 60, 261
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 172
BbvI GCAGC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 63, 377
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 69, 218
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 69, 218
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 65, 253, 319
BspCNI CTCAG 1 cut(s) 73
BspPI GGATC 2 cut(s) 60, 261
BsrI ACTGG 2 cut(s) 69, 218
BssMI GATC 3 cut(s) 65, 253, 319
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 3 cut(s) 68, 256, 322
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 3 cut(s) 65, 253, 319
BstMWI GCNNNNNNNGC 2 cut(s) 10, 307
BstNSI RCATGY 3 cut(s) 245, 301, 308
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 23, 76
CaiI CAGNNNCTG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 85, 312
CviAII CATG 5 cut(s) 101, 227, 242, 298, 305
CviJI RGCY 7 cut(s) 13, 80, 98, 124, 197, 347, 372
CviKI_1 RGCY 7 cut(s) 13, 80, 98, 124, 197, 347, 372
CviQI GTAC 2 cut(s) 85, 312
DdeI CTNAG 1 cut(s) 81
DpnI GATC 3 cut(s) 67, 255, 321
DpnII GATC 3 cut(s) 65, 253, 319
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 26, 336
EcoRV GATATC 1 cut(s) 334
FaeI CATG 5 cut(s) 104, 230, 245, 301, 308
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 309, 341
FatI CATG 5 cut(s) 100, 226, 241, 297, 304
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 63, 377
GluI GCNGC 1 cut(s) 195
Hin1II CATG 5 cut(s) 104, 230, 245, 301, 308
HinfI GANTC 2 cut(s) 150, 281
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 45, 286
Hpy188III TCNNGA 2 cut(s) 337, 354
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 4, 74, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 307
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 5 cut(s) 104, 230, 245, 301, 308
Kzo9I GATC 3 cut(s) 65, 253, 319
LpnPI CCDG 4 cut(s) 82, 231, 339, 350
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 2 cut(s) 63, 377
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 67, 255, 321
MboI GATC 3 cut(s) 65, 253, 319
MboII GAAGA 1 cut(s) 329
MflI RGATCY 1 cut(s) 65
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 1 cut(s) 83
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 10, 307
NdeII GATC 3 cut(s) 65, 253, 319
NlaIII CATG 5 cut(s) 104, 230, 245, 301, 308
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 3 cut(s) 245, 301, 308
PciI ACATGT 2 cut(s) 241, 304
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PscI ACATGT 2 cut(s) 241, 304
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 2 cut(s) 86, 313
RsaNI GTAC 2 cut(s) 85, 312
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 3 cut(s) 65, 253, 319
SchI GAGTC 1 cut(s) 290
SetI ASST 4 cut(s) 37, 82, 349, 374
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 172
SspMI CTAG 2 cut(s) 63, 377
TaqI TCGA 1 cut(s) 256
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 30, 76
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 152, 185, 253
TspRI CASTG 2 cut(s) 30, 76
XapI RAATTY 1 cut(s) 172
XceI RCATGY 3 cut(s) 245, 301, 308
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 2 cut(s) 63, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.