Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 64 - 307 | 3.6e-73 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 63 |
| AatII | GACGTC | 1 cut(s) | 441 |
| AciI | CCGC | 1 cut(s) | 494 |
| AclWI | GGATC | 4 cut(s) | 134, 716, 956, 1083 |
| AcsI | RAATTY | 4 cut(s) | 79, 477, 590, 749 |
| AcuI | CTGAAG | 3 cut(s) | 167, 488, 618 |
| AcyI | GRCGYC | 1 cut(s) | 438 |
| AfaI | GTAC | 2 cut(s) | 22, 196 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 17, 417, 579 |
| AflIII | ACRYGT | 1 cut(s) | 483 |
| AgsI | TTSAA | 5 cut(s) | 110, 562, 612, 793, 1014 |
| AhlI | ACTAGT | 1 cut(s) | 304 |
| AjnI | CCWGG | 3 cut(s) | 4, 345, 496 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1063, 1095 |
| AluBI | AGCT | 5 cut(s) | 221, 407, 433, 737, 1091 |
| AluI | AGCT | 5 cut(s) | 221, 407, 433, 737, 1091 |
| Alw26I | GTCTC | 3 cut(s) | 52, 295, 492 |
| AlwI | GGATC | 4 cut(s) | 134, 716, 956, 1083 |
| ApeKI | GCWGC | 5 cut(s) | 131, 151, 404, 407, 1088 |
| ApoI | RAATTY | 4 cut(s) | 79, 477, 590, 749 |
| AseI | ATTAAT | 1 cut(s) | 995 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 603, 749, 797 |
| AspA2I | CCTAGG | 1 cut(s) | 781 |
| AspS9I | GGNCC | 3 cut(s) | 8, 420, 520 |
| AsuHPI | GGTGA | 3 cut(s) | 351, 473, 797 |
| AvaII | GGWCC | 3 cut(s) | 8, 420, 520 |
| AvrII | CCTAGG | 1 cut(s) | 781 |
| BbvI | GCAGC | 4 cut(s) | 118, 163, 394, 416 |
| BccI | CCATC | 3 cut(s) | 240, 269, 411 |
| BceAI | ACGGC | 1 cut(s) | 381 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1049, 1083 |
| BciT130I | CCWGG | 3 cut(s) | 6, 347, 498 |
| BcoDI | GTCTC | 3 cut(s) | 52, 295, 492 |
| BcuI | ACTAGT | 1 cut(s) | 304 |
| BfaI | CTAG | 6 cut(s) | 305, 401, 654, 782, 825, 966 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 499 |
| BisI | GCNGC | 6 cut(s) | 132, 152, 405, 408, 494, 1089 |
| BlnI | CCTAGG | 1 cut(s) | 781 |
| BlsI | GCNGC | 6 cut(s) | 133, 153, 406, 409, 495, 1090 |
| Bme1390I | CCNGG | 3 cut(s) | 6, 347, 498 |
| Bme18I | GGWCC | 3 cut(s) | 8, 420, 520 |
| BmgT120I | GGNCC | 3 cut(s) | 8, 420, 520 |
| BmrFI | CCNGG | 3 cut(s) | 6, 347, 498 |
| BmsI | GCATC | 4 cut(s) | 218, 578, 830, 868 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 1066 |
| BsaHI | GRCGYC | 1 cut(s) | 438 |
| BsaJI | CCNNGG | 6 cut(s) | 363, 412, 457, 497, 781, 915 |
| BsaWI | WCCGGW | 1 cut(s) | 1018 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 17, 417, 579 |
| Bse118I | RCCGGY | 1 cut(s) | 713 |
| Bse1I | ACTGG | 1 cut(s) | 619 |
| Bse3DI | GCAATG | 2 cut(s) | 165, 724 |
| BseBI | CCWGG | 3 cut(s) | 6, 347, 498 |
| BseDI | CCNNGG | 6 cut(s) | 363, 412, 457, 497, 781, 915 |
| BseGI | GGATG | 5 cut(s) | 209, 422, 569, 703, 883 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 17, 417, 579 |
| BseMI | GCAATG | 2 cut(s) | 165, 724 |
| BseMII | CTCAG | 3 cut(s) | 104, 117, 860 |
| BseNI | ACTGG | 1 cut(s) | 619 |
| BseXI | GCAGC | 4 cut(s) | 118, 163, 394, 416 |
| BsiSI | CCGG | 2 cut(s) | 714, 1019 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 17, 417, 579 |
| BsmAI | GTCTC | 3 cut(s) | 52, 295, 492 |
| Bsp143I | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| Bsp19I | CCATGG | 2 cut(s) | 457, 915 |
| BspACI | CCGC | 1 cut(s) | 494 |
| BspCNI | CTCAG | 3 cut(s) | 103, 118, 859 |
| BspPI | GGATC | 4 cut(s) | 134, 716, 956, 1083 |
| BsrDI | GCAATG | 2 cut(s) | 165, 724 |
| BsrFI | RCCGGY | 1 cut(s) | 713 |
| BsrI | ACTGG | 1 cut(s) | 619 |
| BssAI | RCCGGY | 1 cut(s) | 713 |
| BssECI | CCNNGG | 6 cut(s) | 363, 412, 457, 497, 781, 915 |
| BssMI | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| BssNI | GRCGYC | 1 cut(s) | 438 |
| BssT1I | CCWWGG | 3 cut(s) | 457, 781, 915 |
| Bst2UI | CCWGG | 3 cut(s) | 6, 347, 498 |
| Bst4CI | ACNGT | 1 cut(s) | 1009 |
| BstACI | GRCGYC | 1 cut(s) | 438 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 4 cut(s) | 69, 156, 177, 567 |
| BstDEI | CTNAG | 3 cut(s) | 90, 126, 846 |
| BstDSI | CCRYGG | 4 cut(s) | 363, 412, 457, 915 |
| BstF5I | GGATG | 5 cut(s) | 209, 422, 569, 703, 883 |
| BstKTI | GATC | 5 cut(s) | 119, 142, 724, 964, 1078 |
| BstMAI | GTCTC | 3 cut(s) | 52, 295, 492 |
| BstMBI | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 160, 404, 499 |
| BstNI | CCWGG | 3 cut(s) | 6, 347, 498 |
| BstNSI | RCATGY | 1 cut(s) | 487 |
| BstSCI | CCNGG | 3 cut(s) | 4, 345, 496 |
| BstV1I | GCAGC | 4 cut(s) | 118, 163, 394, 416 |
| BstX2I | RGATCY | 1 cut(s) | 961 |
| BstYI | RGATCY | 1 cut(s) | 961 |
| BtgI | CCRYGG | 4 cut(s) | 363, 412, 457, 915 |
| BtsCI | GGATG | 5 cut(s) | 209, 422, 569, 703, 883 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| Cac8I | GCNNGC | 4 cut(s) | 69, 156, 177, 567 |
| Cfr10I | RCCGGY | 1 cut(s) | 713 |
| Cfr13I | GGNCC | 3 cut(s) | 8, 420, 520 |
| Csp6I | GTAC | 2 cut(s) | 21, 195 |
| CviAII | CATG | 6 cut(s) | 198, 458, 484, 916, 1040, 1057 |
| CviQI | GTAC | 2 cut(s) | 21, 195 |
| DdeI | CTNAG | 3 cut(s) | 90, 126, 846 |
| DpnI | GATC | 5 cut(s) | 118, 141, 723, 963, 1077 |
| DpnII | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| Eco130I | CCWWGG | 3 cut(s) | 457, 781, 915 |
| Eco47I | GGWCC | 3 cut(s) | 8, 420, 520 |
| Eco57I | CTGAAG | 3 cut(s) | 167, 488, 618 |
| EcoRII | CCWGG | 3 cut(s) | 4, 345, 496 |
| EcoT14I | CCWWGG | 3 cut(s) | 457, 781, 915 |
| ErhI | CCWWGG | 3 cut(s) | 457, 781, 915 |
| FaeI | CATG | 6 cut(s) | 201, 461, 487, 919, 1043, 1060 |
| FatI | CATG | 6 cut(s) | 197, 457, 483, 915, 1039, 1056 |
| FauNDI | CATATG | 1 cut(s) | 1030 |
| Fnu4HI | GCNGC | 6 cut(s) | 132, 152, 405, 408, 494, 1089 |
| FokI | GGATG | 5 cut(s) | 196, 429, 556, 710, 890 |
| Fsp4HI | GCNGC | 6 cut(s) | 132, 152, 405, 408, 494, 1089 |
| FspBI | CTAG | 6 cut(s) | 305, 401, 654, 782, 825, 966 |
| GluI | GCNGC | 6 cut(s) | 132, 152, 405, 408, 494, 1089 |
| HapII | CCGG | 2 cut(s) | 714, 1019 |
| Hin1I | GRCGYC | 1 cut(s) | 438 |
| Hin1II | CATG | 6 cut(s) | 201, 461, 487, 919, 1043, 1060 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HinfI | GANTC | 2 cut(s) | 202, 1053 |
| HpaII | CCGG | 2 cut(s) | 714, 1019 |
| HphI | GGTGA | 3 cut(s) | 351, 473, 797 |
| Hpy166II | GTNNAC | 4 cut(s) | 253, 340, 651, 950 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 127, 274, 598 |
| Hpy188III | TCNNGA | 5 cut(s) | 185, 685, 725, 1014, 1045 |
| Hpy8I | GTNNAC | 4 cut(s) | 253, 340, 651, 950 |
| Hpy99I | CGWCG | 1 cut(s) | 440 |
| HpyCH4III | ACNGT | 1 cut(s) | 1009 |
| HpyCH4IV | ACGT | 2 cut(s) | 438, 922 |
| HpyCH4V | TGCA | 8 cut(s) | 163, 175, 209, 625, 757, 821, 881, 1060 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 160, 404, 499 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 126, 846 |
| HpySE526I | ACGT | 2 cut(s) | 438, 922 |
| Hsp92I | GRCGYC | 1 cut(s) | 438 |
| Hsp92II | CATG | 6 cut(s) | 201, 461, 487, 919, 1043, 1060 |
| Kzo9I | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| Lsp1109I | GCAGC | 4 cut(s) | 118, 163, 394, 416 |
| LweI | GCATC | 4 cut(s) | 218, 578, 830, 868 |
| MaeI | CTAG | 6 cut(s) | 305, 401, 654, 782, 825, 966 |
| MaeII | ACGT | 2 cut(s) | 438, 922 |
| MaeIII | GTNAC | 1 cut(s) | 785 |
| MalI | GATC | 5 cut(s) | 118, 141, 723, 963, 1077 |
| MboI | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| MboII | GAAGA | 2 cut(s) | 485, 757 |
| MfeI | CAATTG | 1 cut(s) | 326 |
| MflI | RGATCY | 1 cut(s) | 961 |
| MluCI | AATT | 7 cut(s) | 79, 170, 326, 477, 590, 749, 932 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 7 cut(s) | 42, 121, 325, 511, 692, 1077, 1078 |
| MroXI | GAANNNNTTC | 3 cut(s) | 603, 749, 797 |
| MseI | TTAA | 3 cut(s) | 774, 929, 995 |
| MslI | CAYNNNNRTG | 1 cut(s) | 914 |
| MspA1I | CMGCKG | 2 cut(s) | 221, 407 |
| MspI | CCGG | 2 cut(s) | 714, 1019 |
| MspR9I | CCNGG | 3 cut(s) | 6, 347, 498 |
| MunI | CAATTG | 1 cut(s) | 326 |
| MvaI | CCWGG | 3 cut(s) | 6, 347, 498 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 160, 404, 499 |
| NcoI | CCATGG | 2 cut(s) | 457, 915 |
| NdeI | CATATG | 1 cut(s) | 1030 |
| NdeII | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| NlaIII | CATG | 6 cut(s) | 201, 461, 487, 919, 1043, 1060 |
| NmuCI | GTSAC | 1 cut(s) | 785 |
| NspI | RCATGY | 1 cut(s) | 487 |
| PciI | ACATGT | 1 cut(s) | 483 |
| PdmI | GAANNNNTTC | 3 cut(s) | 603, 749, 797 |
| PfeI | GAWTC | 1 cut(s) | 1053 |
| PkrI | GCNGC | 6 cut(s) | 133, 153, 406, 409, 495, 1090 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| PscI | ACATGT | 1 cut(s) | 483 |
| PshBI | ATTAAT | 1 cut(s) | 995 |
| PsiI | TTATAA | 1 cut(s) | 63 |
| Psp6I | CCWGG | 3 cut(s) | 4, 345, 496 |
| PspGI | CCWGG | 3 cut(s) | 4, 345, 496 |
| PspPI | GGNCC | 3 cut(s) | 8, 420, 520 |
| PsuI | RGATCY | 1 cut(s) | 961 |
| PvuII | CAGCTG | 2 cut(s) | 221, 407 |
| RsaI | GTAC | 2 cut(s) | 22, 196 |
| RsaNI | GTAC | 2 cut(s) | 21, 195 |
| RseI | CAYNNNNRTG | 1 cut(s) | 914 |
| SaqAI | TTAA | 3 cut(s) | 774, 929, 995 |
| SatI | GCNGC | 6 cut(s) | 132, 152, 405, 408, 494, 1089 |
| Sau3AI | GATC | 5 cut(s) | 116, 139, 721, 961, 1075 |
| Sau96I | GGNCC | 3 cut(s) | 8, 420, 520 |
| SchI | GAGTC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 3 cut(s) | 6, 347, 498 |
| SfaNI | GCATC | 4 cut(s) | 218, 578, 830, 868 |
| SinI | GGWCC | 3 cut(s) | 8, 420, 520 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 914 |
| SmlI | CTYRAG | 1 cut(s) | 1045 |
| SmoI | CTYRAG | 1 cut(s) | 1045 |
| SpeI | ACTAGT | 1 cut(s) | 304 |
| Sse9I | AATT | 7 cut(s) | 79, 170, 326, 477, 590, 749, 932 |
| SsiI | CCGC | 1 cut(s) | 494 |
| SspMI | CTAG | 6 cut(s) | 305, 401, 654, 782, 825, 966 |
| StyD4I | CCNGG | 3 cut(s) | 4, 345, 496 |
| StyI | CCWWGG | 3 cut(s) | 457, 781, 915 |
| TaaI | ACNGT | 1 cut(s) | 1009 |
| TaiI | ACGT | 2 cut(s) | 441, 925 |
| TaqI | TCGA | 3 cut(s) | 244, 435, 1069 |
| TaqII | GACCGA | 1 cut(s) | 537 |
| TasI | AATT | 7 cut(s) | 79, 170, 326, 477, 590, 749, 932 |
| TauI | GCSGC | 1 cut(s) | 496 |
| TfiI | GAWTC | 1 cut(s) | 1053 |
| Tru1I | TTAA | 3 cut(s) | 774, 929, 995 |
| Tru9I | TTAA | 3 cut(s) | 774, 929, 995 |
| TscAI | CASTG | 1 cut(s) | 106 |
| TseFI | GTSAC | 1 cut(s) | 785 |
| TseI | GCWGC | 5 cut(s) | 131, 151, 404, 407, 1088 |
| Tsp45I | GTSAC | 1 cut(s) | 785 |
| TspDTI | ATGAA | 4 cut(s) | 416, 486, 1028, 1045 |
| TspRI | CASTG | 1 cut(s) | 106 |
| VpaK11BI | GGWCC | 3 cut(s) | 8, 420, 520 |
| VspI | ATTAAT | 1 cut(s) | 995 |
| XapI | RAATTY | 4 cut(s) | 79, 477, 590, 749 |
| XceI | RCATGY | 1 cut(s) | 487 |
| XmaJI | CCTAGG | 1 cut(s) | 781 |
| XmnI | GAANNNNTTC | 3 cut(s) | 603, 749, 797 |
| XspI | CTAG | 6 cut(s) | 305, 401, 654, 782, 825, 966 |
| ZraI | GACGTC | 1 cut(s) | 439 |