Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 535 - 644 | 1.8e-36 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1668 |
| Acc16I | TGCGCA | 2 cut(s) | 2522, 2705 |
| Acc65I | GGTACC | 3 cut(s) | 272, 1433, 1691 |
| AccB1I | GGYRCC | 4 cut(s) | 272, 1433, 1621, 1691 |
| AccBSI | CCGCTC | 2 cut(s) | 1195, 1820 |
| AccI | GTMKAC | 2 cut(s) | 548, 1893 |
| AclWI | GGATC | 5 cut(s) | 120, 133, 461, 474, 2838 |
| AcoI | YGGCCR | 1 cut(s) | 1918 |
| AcsI | RAATTY | 5 cut(s) | 141, 339, 407, 1057, 1341 |
| AcvI | CACGTG | 2 cut(s) | 481, 2836 |
| AfaI | GTAC | 8 cut(s) | 274, 685, 719, 994, 1435, 1548, 1693, 2449 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 51, 1372, 1916, 1927, 2318, 2761, 2808 |
| AflII | CTTAAG | 1 cut(s) | 2269 |
| AflIII | ACRYGT | 3 cut(s) | 478, 2498, 2835 |
| AgeI | ACCGGT | 1 cut(s) | 2048 |
| AhlI | ACTAGT | 1 cut(s) | 1208 |
| AjiI | CACGTC | 2 cut(s) | 114, 1852 |
| AjnI | CCWGG | 4 cut(s) | 1328, 1909, 2234, 2290 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2577, 2609 |
| AluBI | AGCT | 6 cut(s) | 806, 847, 1786, 1957, 2456, 2588 |
| AluI | AGCT | 6 cut(s) | 806, 847, 1786, 1957, 2456, 2588 |
| Alw21I | GWGCWC | 1 cut(s) | 783 |
| Alw26I | GTCTC | 6 cut(s) | 383, 425, 611, 1164, 1757, 1925 |
| AlwI | GGATC | 5 cut(s) | 120, 133, 461, 474, 2838 |
| AoxI | GGCC | 4 cut(s) | 1331, 1569, 1643, 1918 |
| ApeKI | GCWGC | 8 cut(s) | 118, 362, 566, 1181, 1376, 2255, 2588, 2716 |
| ApoI | RAATTY | 5 cut(s) | 141, 339, 407, 1057, 1341 |
| AsiGI | ACCGGT | 1 cut(s) | 2048 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 29 |
| Asp718I | GGTACC | 3 cut(s) | 272, 1433, 1691 |
| AspLEI | GCGC | 3 cut(s) | 2523, 2628, 2706 |
| AspS9I | GGNCC | 4 cut(s) | 42, 809, 1644, 2322 |
| AsuII | TTCGAA | 1 cut(s) | 445 |
| AvaII | GGWCC | 3 cut(s) | 42, 809, 2322 |
| BaeGI | GKGCMC | 3 cut(s) | 673, 708, 1626 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 264, 297 |
| BamHI | GGATCC | 2 cut(s) | 125, 466 |
| BanI | GGYRCC | 4 cut(s) | 272, 1433, 1621, 1691 |
| BanII | GRGCYC | 1 cut(s) | 2362 |
| BbrPI | CACGTG | 2 cut(s) | 481, 2836 |
| BbsI | GAAGAC | 6 cut(s) | 116, 404, 757, 1486, 1893, 2049 |
| Bbv12I | GWGCWC | 1 cut(s) | 783 |
| BbvI | GCAGC | 8 cut(s) | 105, 374, 553, 1168, 1363, 2267, 2575, 2728 |
| BccI | CCATC | 9 cut(s) | 32, 53, 409, 457, 983, 1072, 1238, 1494, 2183 |
| BceAI | ACGGC | 3 cut(s) | 1658, 2174, 2186 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2406, 2440 |
| BciT130I | CCWGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| BciVI | GTATCC | 2 cut(s) | 1724, 2365 |
| BclI | TGATCA | 1 cut(s) | 2086 |
| BcoDI | GTCTC | 6 cut(s) | 383, 425, 611, 1164, 1757, 1925 |
| BcuI | ACTAGT | 1 cut(s) | 1208 |
| BfaI | CTAG | 5 cut(s) | 1209, 1718, 1935, 2030, 2181 |
| BfmI | CTRYAG | 1 cut(s) | 2721 |
| BfrI | CTTAAG | 1 cut(s) | 2269 |
| BfuI | GTATCC | 2 cut(s) | 1724, 2365 |
| BglII | AGATCT | 1 cut(s) | 2725 |
| BmcAI | AGTACT | 1 cut(s) | 719 |
| Bme1390I | CCNGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| Bme18I | GGWCC | 3 cut(s) | 42, 809, 2322 |
| BmgBI | CACGTC | 2 cut(s) | 114, 1852 |
| BmgT120I | GGNCC | 4 cut(s) | 42, 809, 1644, 2322 |
| BmiI | GGNNCC | 9 cut(s) | 43, 127, 274, 468, 811, 1435, 1623, 1693, 2323 |
| BmrFI | CCNGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| BmrI | ACTGGG | 4 cut(s) | 807, 1393, 2365, 2606 |
| BmsI | GCATC | 4 cut(s) | 316, 1909, 2242, 2612 |
| BmuI | ACTGGG | 4 cut(s) | 807, 1393, 2365, 2606 |
| BpiI | GAAGAC | 6 cut(s) | 116, 404, 757, 1486, 1893, 2049 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 191, 223 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1002, 1725, 1808 |
| Bpu14I | TTCGAA | 1 cut(s) | 445 |
| BpuEI | CTTGAG | 4 cut(s) | 287, 662, 2446, 2827 |
| Bsa29I | ATCGAT | 1 cut(s) | 2646 |
| BsaAI | YACGTR | 3 cut(s) | 481, 2499, 2836 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1107 |
| BsaI | GGTCTC | 1 cut(s) | 425 |
| BsaJI | CCNNGG | 8 cut(s) | 366, 498, 741, 1910, 2056, 2234, 2316, 2487 |
| BsaWI | WCCGGW | 2 cut(s) | 985, 2048 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1198, 1228, 1497, 1527, 2783, 2813 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 51, 1372, 1916, 1927, 2318, 2761, 2808 |
| Bse118I | RCCGGY | 1 cut(s) | 2048 |
| Bse1I | ACTGG | 8 cut(s) | 108, 813, 1399, 2360, 2420, 2561, 2612, 2755 |
| Bse3DI | GCAATG | 1 cut(s) | 160 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1107 |
| BseBI | CCWGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| BseCI | ATCGAT | 1 cut(s) | 2646 |
| BseDI | CCNNGG | 8 cut(s) | 366, 498, 741, 1910, 2056, 2234, 2316, 2487 |
| BseGI | GGATG | 6 cut(s) | 175, 322, 468, 950, 994, 1064 |
| BseJI | GATNNNNATC | 1 cut(s) | 1107 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 51, 1372, 1916, 1927, 2318, 2761, 2808 |
| BseMI | GCAATG | 1 cut(s) | 160 |
| BseMII | CTCAG | 6 cut(s) | 291, 407, 566, 936, 1016, 2735 |
| BseNI | ACTGG | 8 cut(s) | 108, 813, 1399, 2360, 2420, 2561, 2612, 2755 |
| BseRI | GAGGAG | 2 cut(s) | 937, 1152 |
| BseSI | GKGCMC | 3 cut(s) | 673, 708, 1626 |
| BseX3I | CGGCCG | 1 cut(s) | 1918 |
| BseXI | GCAGC | 8 cut(s) | 105, 374, 553, 1168, 1363, 2267, 2575, 2728 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1921 |
| BshFI | GGCC | 4 cut(s) | 1333, 1571, 1645, 1920 |
| BshNI | GGYRCC | 4 cut(s) | 272, 1433, 1621, 1691 |
| BshTI | ACCGGT | 1 cut(s) | 2048 |
| BshVI | ATCGAT | 1 cut(s) | 2646 |
| BsiEI | CGRYCG | 1 cut(s) | 1921 |
| BsiHKAI | GWGCWC | 1 cut(s) | 783 |
| BsiSI | CCGG | 3 cut(s) | 557, 986, 2049 |
| BslFI | GGGAC | 2 cut(s) | 1965, 2169 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 51, 1372, 1916, 1927, 2318, 2761, 2808 |
| BsmAI | GTCTC | 6 cut(s) | 383, 425, 611, 1164, 1757, 1925 |
| BsmFI | GGGAC | 2 cut(s) | 1965, 2169 |
| BsnI | GGCC | 4 cut(s) | 1333, 1571, 1645, 1920 |
| Bso31I | GGTCTC | 1 cut(s) | 425 |
| Bsp119I | TTCGAA | 1 cut(s) | 445 |
| Bsp1286I | GDGCHC | 5 cut(s) | 673, 708, 783, 1626, 2362 |
| Bsp1407I | TGTACA | 1 cut(s) | 683 |
| Bsp19I | CCATGG | 3 cut(s) | 498, 741, 2487 |
| BspANI | GGCC | 4 cut(s) | 1333, 1571, 1645, 1920 |
| BspCNI | CTCAG | 6 cut(s) | 290, 406, 565, 935, 1015, 2736 |
| BspDI | ATCGAT | 1 cut(s) | 2646 |
| BspHI | TCATGA | 4 cut(s) | 253, 849, 1165, 2620 |
| BspLI | GGNNCC | 9 cut(s) | 43, 127, 274, 468, 811, 1435, 1623, 1693, 2323 |
| BspMAI | CTGCAG | 1 cut(s) | 2725 |
| BspPI | GGATC | 5 cut(s) | 120, 133, 461, 474, 2838 |
| BspT104I | TTCGAA | 1 cut(s) | 445 |
| BspT107I | GGYRCC | 4 cut(s) | 272, 1433, 1621, 1691 |
| BspTI | CTTAAG | 1 cut(s) | 2269 |
| BspTNI | GGTCTC | 1 cut(s) | 425 |
| BsrBI | CCGCTC | 2 cut(s) | 1195, 1820 |
| BsrDI | GCAATG | 1 cut(s) | 160 |
| BsrFI | RCCGGY | 1 cut(s) | 2048 |
| BsrGI | TGTACA | 1 cut(s) | 683 |
| BsrI | ACTGG | 8 cut(s) | 108, 813, 1399, 2360, 2420, 2561, 2612, 2755 |
| BssAI | RCCGGY | 1 cut(s) | 2048 |
| BssECI | CCNNGG | 8 cut(s) | 366, 498, 741, 1910, 2056, 2234, 2316, 2487 |
| BssNAI | GTATAC | 1 cut(s) | 1894 |
| BssT1I | CCWWGG | 5 cut(s) | 366, 498, 741, 2056, 2487 |
| Bst1107I | GTATAC | 1 cut(s) | 1894 |
| Bst2UI | CCWGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| Bst4CI | ACNGT | 7 cut(s) | 223, 593, 1305, 1696, 1736, 2148, 2452 |
| Bst6I | CTCTTC | 6 cut(s) | 477, 575, 828, 945, 1261, 1483 |
| BstAFI | CTTAAG | 1 cut(s) | 2269 |
| BstAUI | TGTACA | 1 cut(s) | 683 |
| BstBAI | YACGTR | 3 cut(s) | 481, 2499, 2836 |
| BstBI | TTCGAA | 1 cut(s) | 445 |
| BstC8I | GCNNGC | 4 cut(s) | 522, 1714, 2458, 2721 |
| BstDSI | CCRYGG | 4 cut(s) | 498, 741, 2316, 2487 |
| BstF5I | GGATG | 6 cut(s) | 175, 322, 468, 950, 994, 1064 |
| BstHHI | GCGC | 3 cut(s) | 2523, 2628, 2706 |
| BstMAI | GTCTC | 6 cut(s) | 383, 425, 611, 1164, 1757, 1925 |
| BstMCI | CGRYCG | 1 cut(s) | 1921 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 193, 572, 787, 1598, 1778, 2357, 2632 |
| BstNI | CCWGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| BstNSI | RCATGY | 2 cut(s) | 184, 1900 |
| BstSCI | CCNGG | 4 cut(s) | 1328, 1909, 2234, 2290 |
| BstSFI | CTRYAG | 1 cut(s) | 2721 |
| BstSLI | GKGCMC | 3 cut(s) | 673, 708, 1626 |
| BstV1I | GCAGC | 8 cut(s) | 105, 374, 553, 1168, 1363, 2267, 2575, 2728 |
| BstV2I | GAAGAC | 6 cut(s) | 116, 404, 757, 1486, 1893, 2049 |
| BstX2I | RGATCY | 3 cut(s) | 125, 466, 2725 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2427 |
| BstYI | RGATCY | 3 cut(s) | 125, 466, 2725 |
| BstZ17I | GTATAC | 1 cut(s) | 1894 |
| BstZI | CGGCCG | 1 cut(s) | 1918 |
| Bsu15I | ATCGAT | 1 cut(s) | 2646 |
| BsuI | GTATCC | 2 cut(s) | 1724, 2365 |
| BsuRI | GGCC | 4 cut(s) | 1333, 1571, 1645, 1920 |
| BsuTUI | ATCGAT | 1 cut(s) | 2646 |
| BtgI | CCRYGG | 4 cut(s) | 498, 741, 2316, 2487 |
| BtrI | CACGTC | 2 cut(s) | 114, 1852 |
| BtsCI | GGATG | 6 cut(s) | 175, 322, 468, 950, 994, 1064 |
| BtsI | GCAGTG | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 3 cut(s) | 157, 285, 1245 |
| Cac8I | GCNNGC | 4 cut(s) | 522, 1714, 2458, 2721 |
| CciI | TCATGA | 4 cut(s) | 253, 849, 1165, 2620 |
| CfoI | GCGC | 3 cut(s) | 2523, 2628, 2706 |
| Cfr10I | RCCGGY | 1 cut(s) | 2048 |
| Cfr13I | GGNCC | 4 cut(s) | 42, 809, 1644, 2322 |
| ClaI | ATCGAT | 1 cut(s) | 2646 |
| CseI | GACGC | 2 cut(s) | 2058, 2357 |
| CsiI | ACCWGGT | 1 cut(s) | 2290 |
| Csp6I | GTAC | 8 cut(s) | 273, 684, 718, 993, 1434, 1547, 1692, 2448 |
| CspAI | ACCGGT | 1 cut(s) | 2048 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1398, 1433 |
| CviQI | GTAC | 8 cut(s) | 273, 684, 718, 993, 1434, 1547, 1692, 2448 |
| EaeI | YGGCCR | 1 cut(s) | 1918 |
| EagI | CGGCCG | 1 cut(s) | 1918 |
| Eam1104I | CTCTTC | 6 cut(s) | 477, 575, 828, 945, 1261, 1483 |
| EarI | CTCTTC | 6 cut(s) | 477, 575, 828, 945, 1261, 1483 |
| EclXI | CGGCCG | 1 cut(s) | 1918 |
| Eco130I | CCWWGG | 5 cut(s) | 366, 498, 741, 2056, 2487 |
| Eco24I | GRGCYC | 1 cut(s) | 2362 |
| Eco31I | GGTCTC | 1 cut(s) | 425 |
| Eco32I | GATATC | 1 cut(s) | 1027 |
| Eco47I | GGWCC | 3 cut(s) | 42, 809, 2322 |
| Eco52I | CGGCCG | 1 cut(s) | 1918 |
| Eco72I | CACGTG | 2 cut(s) | 481, 2836 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2322 |
| EcoRII | CCWGG | 4 cut(s) | 1328, 1909, 2234, 2290 |
| EcoRV | GATATC | 1 cut(s) | 1027 |
| EcoT14I | CCWWGG | 5 cut(s) | 366, 498, 741, 2056, 2487 |
| EcoT22I | ATGCAT | 2 cut(s) | 792, 1902 |
| EcoT38I | GRGCYC | 1 cut(s) | 2362 |
| ErhI | CCWWGG | 5 cut(s) | 366, 498, 741, 2056, 2487 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 368, 400 |
| FaqI | GGGAC | 2 cut(s) | 1965, 2169 |
| FauNDI | CATATG | 2 cut(s) | 1014, 2698 |
| FbaI | TGATCA | 1 cut(s) | 2086 |
| FblI | GTMKAC | 2 cut(s) | 548, 1893 |
| FokI | GGATG | 6 cut(s) | 182, 329, 475, 937, 1001, 1051 |
| FriOI | GRGCYC | 1 cut(s) | 2362 |
| FspAI | RTGCGCAY | 1 cut(s) | 2705 |
| FspBI | CTAG | 5 cut(s) | 1209, 1718, 1935, 2030, 2181 |
| FspI | TGCGCA | 2 cut(s) | 2522, 2705 |
| GlaI | GCGC | 3 cut(s) | 2522, 2627, 2705 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| HaeIII | GGCC | 4 cut(s) | 1333, 1571, 1645, 1920 |
| HapII | CCGG | 3 cut(s) | 557, 986, 2049 |
| HgaI | GACGC | 2 cut(s) | 2058, 2357 |
| HhaI | GCGC | 3 cut(s) | 2523, 2628, 2706 |
| Hin6I | GCGC | 3 cut(s) | 2521, 2626, 2704 |
| HinP1I | GCGC | 3 cut(s) | 2521, 2626, 2704 |
| HincII | GTYRAC | 4 cut(s) | 57, 842, 1190, 2297 |
| HindII | GTYRAC | 4 cut(s) | 57, 842, 1190, 2297 |
| HpaII | CCGG | 3 cut(s) | 557, 986, 2049 |
| Hpy188I | TCNGA | 6 cut(s) | 396, 509, 1225, 2016, 2091, 2745 |
| Hpy99I | CGWCG | 2 cut(s) | 1323, 2351 |
| HpyAV | CCTTC | 8 cut(s) | 19, 1137, 1227, 1248, 1416, 1739, 2322, 2816 |
| HpyCH4III | ACNGT | 7 cut(s) | 223, 593, 1305, 1696, 1736, 2148, 2452 |
| HpyCH4IV | ACGT | 8 cut(s) | 113, 480, 1416, 1851, 1890, 2074, 2498, 2835 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 193, 572, 787, 1598, 1778, 2357, 2632 |
| HpySE526I | ACGT | 8 cut(s) | 113, 480, 1416, 1851, 1890, 2074, 2498, 2835 |
| HspAI | GCGC | 3 cut(s) | 2521, 2626, 2704 |
| KpnI | GGTACC | 3 cut(s) | 276, 1437, 1695 |
| Ksp22I | TGATCA | 1 cut(s) | 2086 |
| LmnI | GCTCC | 1 cut(s) | 2489 |
| Lsp1109I | GCAGC | 8 cut(s) | 105, 374, 553, 1168, 1363, 2267, 2575, 2728 |
| LweI | GCATC | 4 cut(s) | 316, 1909, 2242, 2612 |
| MabI | ACCWGGT | 1 cut(s) | 2290 |
| MaeI | CTAG | 5 cut(s) | 1209, 1718, 1935, 2030, 2181 |
| MaeII | ACGT | 8 cut(s) | 113, 480, 1416, 1851, 1890, 2074, 2498, 2835 |
| MaeIII | GTNAC | 7 cut(s) | 280, 1006, 1401, 2070, 2273, 2509, 2576 |
| MbiI | CCGCTC | 2 cut(s) | 1195, 1820 |
| MfeI | CAATTG | 2 cut(s) | 694, 1844 |
| MflI | RGATCY | 3 cut(s) | 125, 466, 2725 |
| MhlI | GDGCHC | 5 cut(s) | 673, 708, 783, 1626, 2362 |
| MlyI | GAGTC | 6 cut(s) | 301, 385, 1220, 1500, 1561, 1809 |
| MmeI | TCCRAC | 3 cut(s) | 532, 1068, 2826 |
| Mph1103I | ATGCAT | 2 cut(s) | 792, 1902 |
| MroXI | GAANNNNTTC | 1 cut(s) | 29 |
| MslI | CAYNNNNRTG | 6 cut(s) | 104, 258, 1013, 1289, 2108, 2250 |
| MspA1I | CMGCKG | 1 cut(s) | 1181 |
| MspCI | CTTAAG | 1 cut(s) | 2269 |
| MspI | CCGG | 3 cut(s) | 557, 986, 2049 |
| MspR9I | CCNGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| MunI | CAATTG | 2 cut(s) | 694, 1844 |
| MvaI | CCWGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 193, 572, 787, 1598, 1778, 2357, 2632 |
| NcoI | CCATGG | 3 cut(s) | 498, 741, 2487 |
| NdeI | CATATG | 2 cut(s) | 1014, 2698 |
| NlaIV | GGNNCC | 9 cut(s) | 43, 127, 274, 468, 811, 1435, 1623, 1693, 2323 |
| NmuCI | GTSAC | 6 cut(s) | 280, 1006, 1401, 2070, 2509, 2576 |
| NsbI | TGCGCA | 2 cut(s) | 2522, 2705 |
| NsiI | ATGCAT | 2 cut(s) | 792, 1902 |
| NspI | RCATGY | 2 cut(s) | 184, 1900 |
| NspV | TTCGAA | 1 cut(s) | 445 |
| PagI | TCATGA | 4 cut(s) | 253, 849, 1165, 2620 |
| PdmI | GAANNNNTTC | 1 cut(s) | 29 |
| PfeI | GAWTC | 6 cut(s) | 30, 442, 1142, 1585, 2035, 2302 |
| PinAI | ACCGGT | 1 cut(s) | 2048 |
| PleI | GAGTC | 6 cut(s) | 301, 385, 1220, 1499, 1560, 1808 |
| PmaCI | CACGTG | 2 cut(s) | 481, 2836 |
| PmlI | CACGTG | 2 cut(s) | 481, 2836 |
| PpsI | GAGTC | 6 cut(s) | 301, 385, 1220, 1499, 1560, 1808 |
| Ppu21I | YACGTR | 3 cut(s) | 481, 2499, 2836 |
| PpuMI | RGGWCCY | 1 cut(s) | 2322 |
| PsiI | TTATAA | 1 cut(s) | 1668 |
| Psp5II | RGGWCCY | 1 cut(s) | 2322 |
| Psp6I | CCWGG | 4 cut(s) | 1328, 1909, 2234, 2290 |
| PspCI | CACGTG | 2 cut(s) | 481, 2836 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspGI | CCWGG | 4 cut(s) | 1328, 1909, 2234, 2290 |
| PspN4I | GGNNCC | 9 cut(s) | 43, 127, 274, 468, 811, 1435, 1623, 1693, 2323 |
| PspPI | GGNCC | 4 cut(s) | 42, 809, 1644, 2322 |
| PspPPI | RGGWCCY | 1 cut(s) | 2322 |
| PstI | CTGCAG | 1 cut(s) | 2725 |
| PsuI | RGATCY | 3 cut(s) | 125, 466, 2725 |
| RsaI | GTAC | 8 cut(s) | 274, 685, 719, 994, 1435, 1548, 1693, 2449 |
| RsaNI | GTAC | 8 cut(s) | 273, 684, 718, 993, 1434, 1547, 1692, 2448 |
| RseI | CAYNNNNRTG | 6 cut(s) | 104, 258, 1013, 1289, 2108, 2250 |
| Sau96I | GGNCC | 4 cut(s) | 42, 809, 1644, 2322 |
| ScaI | AGTACT | 1 cut(s) | 719 |
| SchI | GAGTC | 6 cut(s) | 301, 385, 1220, 1500, 1561, 1809 |
| ScrFI | CCNGG | 4 cut(s) | 1330, 1911, 2236, 2292 |
| SduI | GDGCHC | 5 cut(s) | 673, 708, 783, 1626, 2362 |
| SexAI | ACCWGGT | 1 cut(s) | 2290 |
| SfaNI | GCATC | 4 cut(s) | 316, 1909, 2242, 2612 |
| SfcI | CTRYAG | 1 cut(s) | 2721 |
| SfuI | TTCGAA | 1 cut(s) | 445 |
| SinI | GGWCC | 3 cut(s) | 42, 809, 2322 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 104, 258, 1013, 1289, 2108, 2250 |
| SmlI | CTYRAG | 5 cut(s) | 302, 677, 2269, 2461, 2806 |
| SmoI | CTYRAG | 5 cut(s) | 302, 677, 2269, 2461, 2806 |
| SpeI | ACTAGT | 1 cut(s) | 1208 |
| SspI | AATATT | 1 cut(s) | 454 |
| SspMI | CTAG | 5 cut(s) | 1209, 1718, 1935, 2030, 2181 |
| StyD4I | CCNGG | 4 cut(s) | 1328, 1909, 2234, 2290 |
| StyI | CCWWGG | 5 cut(s) | 366, 498, 741, 2056, 2487 |
| TaaI | ACNGT | 7 cut(s) | 223, 593, 1305, 1696, 1736, 2148, 2452 |
| TaiI | ACGT | 8 cut(s) | 116, 483, 1419, 1854, 1893, 2077, 2501, 2838 |
| TaqI | TCGA | 4 cut(s) | 445, 1101, 1489, 2646 |
| TatI | WGTACW | 3 cut(s) | 683, 717, 1546 |
| TauI | GCSGC | 3 cut(s) | 566, 726, 1820 |
| TfiI | GAWTC | 6 cut(s) | 30, 442, 1142, 1585, 2035, 2302 |
| TscAI | CASTG | 3 cut(s) | 157, 285, 1252 |
| TseFI | GTSAC | 6 cut(s) | 280, 1006, 1401, 2070, 2509, 2576 |
| TseI | GCWGC | 8 cut(s) | 118, 362, 566, 1181, 1376, 2255, 2588, 2716 |
| Tsp45I | GTSAC | 6 cut(s) | 280, 1006, 1401, 2070, 2509, 2576 |
| TspGWI | ACGGA | 2 cut(s) | 2314, 2392 |
| TspRI | CASTG | 3 cut(s) | 157, 285, 1252 |
| Vha464I | CTTAAG | 1 cut(s) | 2269 |
| VpaK11BI | GGWCC | 3 cut(s) | 42, 809, 2322 |
| XapI | RAATTY | 5 cut(s) | 141, 339, 407, 1057, 1341 |
| XceI | RCATGY | 2 cut(s) | 184, 1900 |
| XmiI | GTMKAC | 2 cut(s) | 548, 1893 |
| XmnI | GAANNNNTTC | 1 cut(s) | 29 |
| XspI | CTAG | 5 cut(s) | 1209, 1718, 1935, 2030, 2181 |
| ZrmI | AGTACT | 1 cut(s) | 719 |
| Zsp2I | ATGCAT | 2 cut(s) | 792, 1902 |