gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 3 - 142 | 5.7e-35 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 532 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AcsI | RAATTY | 1 cut(s) | 185 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 541 |
| AflII | CTTAAG | 1 cut(s) | 74 |
| AgsI | TTSAA | 4 cut(s) | 251, 283, 289, 380 |
| Alw21I | GWGCWC | 1 cut(s) | 118 |
| Alw26I | GTCTC | 2 cut(s) | 29, 502 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 1 cut(s) | 605 |
| ApoI | RAATTY | 1 cut(s) | 185 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 278 |
| AspLEI | GCGC | 2 cut(s) | 410, 534 |
| BalI | TGGCCA | 1 cut(s) | 300 |
| BauI | CACGAG | 1 cut(s) | 39 |
| Bbv12I | GWGCWC | 1 cut(s) | 118 |
| BbvI | GCAGC | 1 cut(s) | 617 |
| BccI | CCATC | 1 cut(s) | 173 |
| BceAI | ACGGC | 1 cut(s) | 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BcoDI | GTCTC | 2 cut(s) | 29, 502 |
| BfaI | CTAG | 1 cut(s) | 339 |
| BfrI | CTTAAG | 1 cut(s) | 74 |
| BisI | GCNGC | 1 cut(s) | 606 |
| BlsI | GCNGC | 1 cut(s) | 607 |
| BmsI | GCATC | 3 cut(s) | 330, 382, 570 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| BsaJI | CCNNGG | 2 cut(s) | 295, 403 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 541 |
| Bse118I | RCCGGY | 1 cut(s) | 128 |
| BseDI | CCNNGG | 2 cut(s) | 295, 403 |
| BseGI | GGATG | 2 cut(s) | 165, 397 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 541 |
| BseMII | CTCAG | 1 cut(s) | 463 |
| BseXI | GCAGC | 1 cut(s) | 617 |
| Bsh1236I | CGCG | 1 cut(s) | 532 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 118 |
| BsiSI | CCGG | 1 cut(s) | 129 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 541 |
| BsmAI | GTCTC | 2 cut(s) | 29, 502 |
| BsnI | GGCC | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 1 cut(s) | 118 |
| Bsp143I | GATC | 1 cut(s) | 348 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspCNI | CTCAG | 1 cut(s) | 462 |
| BspFNI | CGCG | 1 cut(s) | 532 |
| BspTI | CTTAAG | 1 cut(s) | 74 |
| BsrFI | RCCGGY | 1 cut(s) | 128 |
| BssAI | RCCGGY | 1 cut(s) | 128 |
| BssECI | CCNNGG | 2 cut(s) | 295, 403 |
| BssMI | GATC | 1 cut(s) | 348 |
| BssSI | CACGAG | 1 cut(s) | 39 |
| BssT1I | CCWWGG | 2 cut(s) | 295, 403 |
| Bst2BI | CACGAG | 1 cut(s) | 39 |
| BstAFI | CTTAAG | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 4 cut(s) | 81, 243, 334, 397 |
| BstDEI | CTNAG | 3 cut(s) | 119, 449, 563 |
| BstF5I | GGATG | 2 cut(s) | 165, 397 |
| BstFNI | CGCG | 1 cut(s) | 532 |
| BstHHI | GCGC | 2 cut(s) | 410, 534 |
| BstKTI | GATC | 1 cut(s) | 351 |
| BstMAI | GTCTC | 2 cut(s) | 29, 502 |
| BstMBI | GATC | 1 cut(s) | 348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 405, 416 |
| BstNSI | RCATGY | 1 cut(s) | 241 |
| BstUI | CGCG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 1 cut(s) | 617 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| BtsCI | GGATG | 2 cut(s) | 165, 397 |
| BtsI | GCAGTG | 1 cut(s) | 189 |
| BtsIMutI | CAGTG | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 4 cut(s) | 81, 243, 334, 397 |
| CfoI | GCGC | 2 cut(s) | 410, 534 |
| Cfr10I | RCCGGY | 1 cut(s) | 128 |
| CviAII | CATG | 2 cut(s) | 176, 238 |
| CviJI | RGCY | 8 cut(s) | 73, 83, 128, 300, 399, 419, 499, 608 |
| CviKI_1 | RGCY | 8 cut(s) | 73, 83, 128, 300, 399, 419, 499, 608 |
| DdeI | CTNAG | 3 cut(s) | 119, 449, 563 |
| DpnI | GATC | 1 cut(s) | 350 |
| DpnII | GATC | 1 cut(s) | 348 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 2 cut(s) | 295, 403 |
| EcoT14I | CCWWGG | 2 cut(s) | 295, 403 |
| EcoT22I | ATGCAT | 1 cut(s) | 473 |
| ErhI | CCWWGG | 2 cut(s) | 295, 403 |
| FaeI | CATG | 2 cut(s) | 179, 241 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 425, 457 |
| FatI | CATG | 2 cut(s) | 175, 237 |
| Fnu4HI | GCNGC | 1 cut(s) | 606 |
| FokI | GGATG | 2 cut(s) | 152, 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 606 |
| FspBI | CTAG | 1 cut(s) | 339 |
| GlaI | GCGC | 2 cut(s) | 409, 533 |
| GluI | GCNGC | 1 cut(s) | 606 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HapII | CCGG | 1 cut(s) | 129 |
| HhaI | GCGC | 2 cut(s) | 410, 534 |
| Hin1II | CATG | 2 cut(s) | 179, 241 |
| Hin6I | GCGC | 2 cut(s) | 408, 532 |
| HinP1I | GCGC | 2 cut(s) | 408, 532 |
| HinfI | GANTC | 1 cut(s) | 615 |
| HpaII | CCGG | 1 cut(s) | 129 |
| Hpy166II | GTNNAC | 2 cut(s) | 50, 556 |
| Hpy188I | TCNGA | 2 cut(s) | 170, 452 |
| Hpy8I | GTNNAC | 2 cut(s) | 50, 556 |
| Hpy99I | CGWCG | 1 cut(s) | 498 |
| HpyAV | CCTTC | 3 cut(s) | 21, 455, 492 |
| HpyCH4V | TGCA | 3 cut(s) | 241, 395, 471 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 405, 416 |
| HpyF3I | CTNAG | 3 cut(s) | 119, 449, 563 |
| Hsp92II | CATG | 2 cut(s) | 179, 241 |
| HspAI | GCGC | 2 cut(s) | 408, 532 |
| Kzo9I | GATC | 1 cut(s) | 348 |
| LpnPI | CCDG | 5 cut(s) | 142, 213, 381, 429, 533 |
| Lsp1109I | GCAGC | 1 cut(s) | 617 |
| LweI | GCATC | 3 cut(s) | 330, 382, 570 |
| MaeI | CTAG | 1 cut(s) | 339 |
| MalI | GATC | 1 cut(s) | 350 |
| MboI | GATC | 1 cut(s) | 348 |
| MboII | GAAGA | 2 cut(s) | 263, 477 |
| MfeI | CAATTG | 1 cut(s) | 246 |
| MhlI | GDGCHC | 1 cut(s) | 118 |
| MlsI | TGGCCA | 1 cut(s) | 300 |
| MluCI | AATT | 7 cut(s) | 185, 246, 278, 302, 327, 538, 569 |
| MluNI | TGGCCA | 1 cut(s) | 300 |
| MlyI | GAGTC | 1 cut(s) | 624 |
| MnlI | CCTC | 5 cut(s) | 94, 206, 382, 594, 595 |
| Mox20I | TGGCCA | 1 cut(s) | 300 |
| Mph1103I | ATGCAT | 1 cut(s) | 473 |
| MroXI | GAANNNNTTC | 1 cut(s) | 278 |
| MscI | TGGCCA | 1 cut(s) | 300 |
| MseI | TTAA | 2 cut(s) | 75, 305 |
| Msp20I | TGGCCA | 1 cut(s) | 300 |
| MspCI | CTTAAG | 1 cut(s) | 74 |
| MspI | CCGG | 1 cut(s) | 129 |
| MunI | CAATTG | 1 cut(s) | 246 |
| MvnI | CGCG | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 405, 416 |
| NdeII | GATC | 1 cut(s) | 348 |
| NlaIII | CATG | 2 cut(s) | 179, 241 |
| NsiI | ATGCAT | 1 cut(s) | 473 |
| NspI | RCATGY | 1 cut(s) | 241 |
| PdmI | GAANNNNTTC | 1 cut(s) | 278 |
| PkrI | GCNGC | 1 cut(s) | 607 |
| PleI | GAGTC | 1 cut(s) | 623 |
| PpsI | GAGTC | 1 cut(s) | 623 |
| SaqAI | TTAA | 2 cut(s) | 75, 305 |
| SatI | GCNGC | 1 cut(s) | 606 |
| Sau3AI | GATC | 1 cut(s) | 348 |
| SchI | GAGTC | 1 cut(s) | 624 |
| SduI | GDGCHC | 1 cut(s) | 118 |
| SetI | ASST | 4 cut(s) | 297, 405, 425, 522 |
| SfaNI | GCATC | 3 cut(s) | 330, 382, 570 |
| SmlI | CTYRAG | 2 cut(s) | 74, 386 |
| SmoI | CTYRAG | 2 cut(s) | 74, 386 |
| Sse9I | AATT | 7 cut(s) | 185, 246, 278, 302, 327, 538, 569 |
| SspI | AATATT | 1 cut(s) | 311 |
| SspMI | CTAG | 1 cut(s) | 339 |
| StyI | CCWWGG | 2 cut(s) | 295, 403 |
| TaqI | TCGA | 3 cut(s) | 324, 493, 586 |
| TasI | AATT | 7 cut(s) | 185, 246, 278, 302, 327, 538, 569 |
| Tru1I | TTAA | 2 cut(s) | 75, 305 |
| Tru9I | TTAA | 2 cut(s) | 75, 305 |
| TscAI | CASTG | 1 cut(s) | 196 |
| TseI | GCWGC | 1 cut(s) | 605 |
| TspDTI | ATGAA | 5 cut(s) | 44, 147, 154, 287, 446 |
| TspRI | CASTG | 1 cut(s) | 196 |
| Vha464I | CTTAAG | 1 cut(s) | 74 |
| XapI | RAATTY | 1 cut(s) | 185 |
| XceI | RCATGY | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 278 |
| XspI | CTAG | 1 cut(s) | 339 |
| Zsp2I | ATGCAT | 1 cut(s) | 473 |