Rw1G001410

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000071
Physical Location & Seq
Reverse (-)
2354913 .. 2358393
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001410.1

Sequence Viewer

Length: 2016 bp
ATGGCTTTAAAGGTTTCTACTTTTGTTGGTTCTGATACATGGATTATTGATTCTGGTGCCTCCGATCATATGACTTATGACAAATCATATTTTACTGAATTGTCTTCCCCACCAGTGTCCTATGTAACCAATGCCAATGGTGAGGCATTTCCTGTGTTAGGGTCAGGGTCAGATCTTCTCACCAGGGAGATAATTGGTCGGGGGTATCTGAGGGGCAGGTTGTTCCATCTGGATCAGACATACGCAGGAGAGAAACCAGGAGCACAGTCCCGCGCCGCTTTGACTTCGACTTTTCGTACTCTTGTTCAAACACAATACCATAGCACCATTAAAGTCCTTCGTTATGACAATGGGGGGGAATATGTTAATCATATTTTCCAAGATTTTTTTACAACCAATGGGATTGTTCACCAAACAACATGTCCACAAACACCAGAACAAAATGGAAAGGGATACAAATGCTATCATCCACCTACCAGGAAGTACTATGTCACTATGGACGTTACCTTCTTTGAGGACATGAGTTATTTTTCCTCCTCCGATACCACTCTTCAGGGGGAGAATTCCTATTTTGAAGAGCTGTATCATGGAGAGGGGGAAGAAACAGAAAGAGACAAGGAAGCAGACACACAGGCAGGAGGTTTTTTTACGGATCCAGTTGAGACCATCAGCTCGCCACCTCTTGAAGCAGTAGCTCCAAGCATCCAGGCACCAGTTTCTATGGCTGAAAATGAAGTTGAAGACACAACTGCCCCTCCTTCCATCGCTTCTACCCCTGACCCACAACTTCCTGGTACGGAAGATCACTCATTTGAGGTATGTCCACCCACTAATACTAGTAGTAGTGAGTCTAGTGTTGAGCAATATGTGTTACCAAATAGGACCACTCGGGGTCAATCAGCCAAAAGATATGAACCTACTCTTACTGCCAAATCAAAATACCCAGTAGCTAATTATATGTGCACTAGGAGATTGTCTAAGTCATATGAATCATTTGTGAATCAAATATCTGCTGTATCAGTACCTAACAAAGTGCAGGATGCGTTGGGGGATCCAAAGTGGAGGAAAGCAATGGAGGAAGAGATGGAGGCGTTGCAGAAGAACAATACTTGGCAACTTGTGCCTCCACCACAAGACAAGAAGGCTGTAGGTTGTCGTTGGGTGTTTACTGTGAAGCATAATGCAGATGGATCAGTGAATCGGTACAAAGCACGCCTTGTAGCAAAGGGACTACAGAGACAGCTAGCCTCTGAGTTTGAGATGAAGGACTTGGGTGAACTTAAGTACTTCTTAGGAATTGAGGTAGCCAGGGGGAGAGAAGGAATCTATCTGTGCCAGAAGAAGTATGTTCTTGACTTGCTGACAGAGACAGGTTTGTTGGATTGCAGACCCATTGACACTCCTATTGAGCAGAACCATTGTTTAGCTGCGTATCCAGATCAGGTACCTACTGATCGAGCTCGCTATCAGAGGTTAGTTGGGCGCTTGATCTATTTGGCTCATACTAGACCAGATGTTGCATATGCAGTGAGTGTGGTTTGTGGCTACACAGATGCAGATTGGGCTGGAAATATCACAGACAGGAGGTCGACATCAGGTTACTTTACCTTTGTGGGAGGTAATCTGGTTACATGGAAGAGTAAGAAACAGAAAGTTGTGGCACGTTCTAGTGTTGAGGCCGAGTATAGAGGTATGGCTCACGGAGTGTGTGAATTGTTATGGCTGAGAAATCTGTTACGTGATCTGGGTTTCAAACTCAAAAATTCCATGCAGTTGTATTGTGATAACAAGGCAGCTATTGACATATCACAGAATCCAGTACAGCATGATCGTACTAAACATGTGGAGGTTGATCGTCACTTTATAAAGGAGAAGCTAGATGCCAAAATTATTAGCTTTCCTTTTGTTCCAACTGAAGAGCAACTTGCAGATGTACTTACCAAAGGAGTTCCCAGGAAGGCGTTTTATGACTCACTTAGCAAGTTGGGCATGGTTGATGTATATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

671

Amino Acids

75.33

Weight (kDa)

5.99

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 14 - 57 8.4e-09 Pol polyprotein, beta-barrel domain
SH3_retrovirus PF25597 147 - 181 4.3e-07 Retroviral polymerase SH3-like domain
RVT_2 PF07727 368 - 412 7e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 410 - 470 5.8e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1865
Acc36I ACCTGC 1 cut(s) 207
Acc65I GGTACC 1 cut(s) 1444
AccB1I GGYRCC 3 cut(s) 56, 709, 1444
AccI GTMKAC 1 cut(s) 1589
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 271, 276
AclWI GGATC 6 cut(s) 240, 647, 660, 1046, 1059, 1198
AcsI RAATTY 2 cut(s) 562, 1762
AcuI CTGAAG 2 cut(s) 536, 1935
AdeI CACNNNGTG 1 cut(s) 1705
AfiI CCNNNNNNNGG 1 cut(s) 158
AflII CTTAAG 1 cut(s) 1280
AflIII ACRYGT 2 cut(s) 419, 1840
AgsI TTSAA 5 cut(s) 308, 575, 686, 740, 1753
AhdI GACNNNNNGTC 1 cut(s) 1585
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 7 cut(s) 182, 256, 476, 705, 790, 1307, 1952
Alw21I GWGCWC 3 cut(s) 265, 965, 1462
Alw26I GTCTC 4 cut(s) 606, 656, 1231, 1361
Alw44I GTGCAC 1 cut(s) 961
AlwI GGATC 6 cut(s) 240, 647, 660, 1046, 1059, 1198
Ama87I CYCGRG 1 cut(s) 888
AoxI GGCC 1 cut(s) 1677
ApaLI GTGCAC 1 cut(s) 961
ApeKI GCWGC 2 cut(s) 1427, 1793
ApoI RAATTY 2 cut(s) 562, 1762
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
Asp718I GGTACC 1 cut(s) 1444
AspLEI GCGC 3 cut(s) 275, 1485, 2008
AspS9I GGNCC 1 cut(s) 882
AsuHPI GGTGA 4 cut(s) 152, 172, 401, 1286
AsuNHI GCTAGC 1 cut(s) 1243
AvaI CYCGRG 1 cut(s) 888
AvaII GGWCC 1 cut(s) 882
BaeGI GKGCMC 1 cut(s) 965
BamHI GGATCC 2 cut(s) 652, 1051
BanI GGYRCC 3 cut(s) 56, 709, 1444
BanII GRGCYC 1 cut(s) 1462
BbsI GAAGAC 2 cut(s) 96, 747
Bbv12I GWGCWC 3 cut(s) 265, 965, 1462
BbvI GCAGC 2 cut(s) 1414, 1805
BccI CCATC 5 cut(s) 234, 674, 770, 1078, 1181
BciT130I CCWGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
BciVI GTATCC 2 cut(s) 446, 1443
BcoDI GTCTC 4 cut(s) 606, 656, 1231, 1361
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 7 cut(s) 837, 852, 966, 1244, 1506, 1668, 1877
BfmI CTRYAG 2 cut(s) 1146, 1232
BfoI RGCGCY 1 cut(s) 1486
BfrI CTTAAG 1 cut(s) 1280
BfuAI ACCTGC 1 cut(s) 207
BfuI GTATCC 2 cut(s) 446, 1443
BglII AGATCT 1 cut(s) 172
BisI GCNGC 3 cut(s) 276, 1428, 1794
BlsI GCNGC 3 cut(s) 277, 1429, 1795
BmcAI AGTACT 2 cut(s) 485, 1286
Bme1390I CCNGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
Bme18I GGWCC 1 cut(s) 882
BmeRI GACNNNNNGTC 1 cut(s) 1585
BmeT110I CYCGRG 1 cut(s) 888
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 5 cut(s) 58, 654, 711, 1053, 1446
BmrFI CCNGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
BmrI ACTGGG 1 cut(s) 938
BmsI GCATC 4 cut(s) 711, 1030, 1543, 1870
BmtI GCTAGC 1 cut(s) 1247
BmuI ACTGGG 1 cut(s) 938
BpiI GAAGAC 2 cut(s) 96, 747
BsaAI YACGTR 1 cut(s) 1739
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 183, 1308, 1952
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 5 cut(s) 113, 656, 713, 944, 1817
Bse3DI GCAATG 1 cut(s) 1077
BseBI CCWGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
BseDI CCNNGG 3 cut(s) 183, 1308, 1952
BseGI GGATG 3 cut(s) 466, 702, 1045
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 1077
BseMII CTCAG 3 cut(s) 200, 1242, 1715
BseNI ACTGG 5 cut(s) 113, 656, 713, 944, 1817
BseRI GAGGAG 1 cut(s) 526
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 2 cut(s) 1414, 1805
BsgI GTGCAG 1 cut(s) 1055
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 1679
BshNI GGYRCC 3 cut(s) 56, 709, 1444
BsiHKAI GWGCWC 3 cut(s) 265, 965, 1462
BsiHKCI CYCGRG 1 cut(s) 888
BslFI GGGAC 2 cut(s) 253, 1242
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 4 cut(s) 606, 656, 1231, 1361
BsmFI GGGAC 2 cut(s) 253, 1242
BsnI GGCC 1 cut(s) 1679
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 888
Bsp1286I GDGCHC 3 cut(s) 265, 965, 1462
BspACI CCGC 2 cut(s) 271, 276
BspANI GGCC 1 cut(s) 1679
BspCNI CTCAG 3 cut(s) 201, 1243, 1716
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 58, 654, 711, 1053, 1446
BspMI ACCTGC 1 cut(s) 207
BspOI GCTAGC 1 cut(s) 1247
BspPI GGATC 6 cut(s) 240, 647, 660, 1046, 1059, 1198
BspQI GCTCTTC 2 cut(s) 570, 1911
BspT107I GGYRCC 3 cut(s) 56, 709, 1444
BspTI CTTAAG 1 cut(s) 1280
BspTNI GGTCTC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 1077
BsrI ACTGG 5 cut(s) 113, 656, 713, 944, 1817
BssECI CCNNGG 3 cut(s) 183, 1308, 1952
Bst2UI CCWGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
Bst4CI ACNGT 2 cut(s) 267, 1171
Bst6I CTCTTC 5 cut(s) 555, 570, 1074, 1631, 1911
BstAFI CTTAAG 1 cut(s) 1280
BstAPI GCANNNNNTGC 1 cut(s) 1120
BstBAI YACGTR 1 cut(s) 1739
BstC8I GCNNGC 4 cut(s) 674, 1213, 1245, 1462
BstDEI CTNAG 6 cut(s) 209, 978, 1251, 1291, 1724, 1976
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 466, 702, 1045
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 1486
BstHHI GCGC 3 cut(s) 275, 1485, 2008
BstMAI GTCTC 4 cut(s) 606, 656, 1231, 1361
BstMWI GCNNNNNNNGC 3 cut(s) 1120, 1562, 1986
BstNI CCWGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
BstNSI RCATGY 2 cut(s) 423, 1844
BstSCI CCNGG 7 cut(s) 182, 256, 476, 705, 790, 1307, 1952
BstSFI CTRYAG 2 cut(s) 1146, 1232
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 1414, 1805
BstV2I GAAGAC 2 cut(s) 96, 747
BstX2I RGATCY 3 cut(s) 172, 652, 1051
BstYI RGATCY 3 cut(s) 172, 652, 1051
BsuI GTATCC 2 cut(s) 446, 1443
BsuRI GGCC 1 cut(s) 1679
BtgZI GCGATG 1 cut(s) 748
BtsCI GGATG 3 cut(s) 466, 702, 1045
BtsI GCAGTG 1 cut(s) 1533
BtsIMutI CAGTG 3 cut(s) 120, 1200, 1533
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 674, 1213, 1245, 1462
CfoI GCGC 3 cut(s) 275, 1485, 2008
Cfr13I GGNCC 1 cut(s) 882
CviAII CATG 9 cut(s) 39, 420, 520, 587, 1632, 1768, 1826, 1841, 1990
DdeI CTNAG 6 cut(s) 209, 978, 1251, 1291, 1724, 1976
DraI TTTAAA 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 1705
DriI GACNNNNNGTC 1 cut(s) 1585
Eam1104I CTCTTC 5 cut(s) 555, 570, 1074, 1631, 1911
Eam1105I GACNNNNNGTC 1 cut(s) 1585
EarI CTCTTC 5 cut(s) 555, 570, 1074, 1631, 1911
Ecl136II GAGCTC 1 cut(s) 1460
Eco24I GRGCYC 1 cut(s) 1462
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 882
Eco53kI GAGCTC 1 cut(s) 1460
Eco57I CTGAAG 2 cut(s) 536, 1935
Eco88I CYCGRG 1 cut(s) 888
EcoICRI GAGCTC 1 cut(s) 1460
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 7 cut(s) 182, 256, 476, 705, 790, 1307, 1952
EcoT38I GRGCYC 1 cut(s) 1462
FaeI CATG 9 cut(s) 42, 423, 523, 590, 1635, 1771, 1829, 1844, 1993
FalI AAGNNNNNCTT 6 cut(s) 1200, 1232, 1274, 1306, 1908, 1940
FaqI GGGAC 2 cut(s) 253, 1242
FatI CATG 9 cut(s) 38, 419, 519, 586, 1631, 1767, 1825, 1840, 1989
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 3 cut(s) 69, 985, 1522
FblI GTMKAC 1 cut(s) 1589
Fnu4HI GCNGC 3 cut(s) 276, 1428, 1794
FokI GGATG 3 cut(s) 453, 689, 1052
FriOI GRGCYC 1 cut(s) 1462
Fsp4HI GCNGC 3 cut(s) 276, 1428, 1794
FspBI CTAG 7 cut(s) 837, 852, 966, 1244, 1506, 1668, 1877
GlaI GCGC 3 cut(s) 274, 1484, 2007
GluI GCNGC 3 cut(s) 276, 1428, 1794
HaeII RGCGCY 1 cut(s) 1486
HaeIII GGCC 1 cut(s) 1679
HhaI GCGC 3 cut(s) 275, 1485, 2008
Hin1II CATG 9 cut(s) 42, 423, 523, 590, 1635, 1771, 1829, 1844, 1993
Hin6I GCGC 3 cut(s) 273, 1483, 2006
HinP1I GCGC 3 cut(s) 273, 1483, 2006
HincII GTYRAC 1 cut(s) 1590
HindII GTYRAC 1 cut(s) 1590
HinfI GANTC 8 cut(s) 50, 848, 989, 1000, 1198, 1323, 1813, 1970
HphI GGTGA 4 cut(s) 152, 172, 401, 1286
Hpy166II GTNNAC 7 cut(s) 409, 425, 824, 963, 1167, 1277, 1590
Hpy188I TCNGA 8 cut(s) 34, 64, 172, 210, 237, 541, 1252, 1470
Hpy188III TCNNGA 4 cut(s) 230, 683, 1352, 1436
Hpy8I GTNNAC 7 cut(s) 409, 425, 824, 963, 1167, 1277, 1590
HpyAV CCTTC 7 cut(s) 347, 517, 768, 1135, 1258, 1313, 1951
HpyCH4III ACNGT 2 cut(s) 267, 1171
HpyCH4IV ACGT 3 cut(s) 501, 1663, 1738
HpyF10VI GCNNNNNNNGC 3 cut(s) 1120, 1562, 1986
HpyF3I CTNAG 6 cut(s) 209, 978, 1251, 1291, 1724, 1976
HpySE526I ACGT 3 cut(s) 501, 1663, 1738
Hsp92II CATG 9 cut(s) 42, 423, 523, 590, 1635, 1771, 1829, 1844, 1993
HspAI GCGC 3 cut(s) 273, 1483, 2006
KpnI GGTACC 1 cut(s) 1448
LguI GCTCTTC 2 cut(s) 570, 1911
LmnI GCTCC 2 cut(s) 260, 700
Lsp1109I GCAGC 2 cut(s) 1414, 1805
LweI GCATC 4 cut(s) 711, 1030, 1543, 1870
MaeI CTAG 7 cut(s) 837, 852, 966, 1244, 1506, 1668, 1877
MaeII ACGT 3 cut(s) 501, 1663, 1738
MaeIII GTNAC 8 cut(s) 124, 490, 502, 870, 1598, 1627, 1734, 1856
MflI RGATCY 3 cut(s) 172, 652, 1051
MhlI GDGCHC 3 cut(s) 265, 965, 1462
MluCI AATT 8 cut(s) 98, 192, 562, 952, 1296, 1712, 1762, 1887
MlyI GAGTC 2 cut(s) 857, 1964
MmeI TCCRAC 2 cut(s) 1359, 1934
MseI TTAA 4 cut(s) 8, 330, 366, 1281
MspCI CTTAAG 1 cut(s) 1280
MspR9I CCNGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
MvaI CCWGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 1120, 1562, 1986
NdeI CATATG 3 cut(s) 69, 985, 1522
NheI GCTAGC 1 cut(s) 1243
NlaIII CATG 9 cut(s) 42, 423, 523, 590, 1635, 1771, 1829, 1844, 1993
NlaIV GGNNCC 5 cut(s) 58, 654, 711, 1053, 1446
NmeAIII GCCGAG 1 cut(s) 1705
NmuCI GTSAC 2 cut(s) 490, 1856
NspI RCATGY 2 cut(s) 423, 1844
PciI ACATGT 2 cut(s) 419, 1840
PciSI GCTCTTC 2 cut(s) 570, 1911
PfeI GAWTC 6 cut(s) 50, 989, 1000, 1198, 1323, 1813
PkrI GCNGC 3 cut(s) 277, 1429, 1795
PleI GAGTC 2 cut(s) 856, 1964
PpsI GAGTC 2 cut(s) 856, 1964
Ppu21I YACGTR 1 cut(s) 1739
PscI ACATGT 2 cut(s) 419, 1840
PsiI TTATAA 1 cut(s) 1865
Psp124BI GAGCTC 1 cut(s) 1462
Psp6I CCWGG 7 cut(s) 182, 256, 476, 705, 790, 1307, 1952
PspGI CCWGG 7 cut(s) 182, 256, 476, 705, 790, 1307, 1952
PspN4I GGNNCC 5 cut(s) 58, 654, 711, 1053, 1446
PspPI GGNCC 1 cut(s) 882
PsuI RGATCY 3 cut(s) 172, 652, 1051
SacI GAGCTC 1 cut(s) 1462
SalI GTCGAC 1 cut(s) 1588
SapI GCTCTTC 2 cut(s) 570, 1911
SaqAI TTAA 4 cut(s) 8, 330, 366, 1281
SatI GCNGC 3 cut(s) 276, 1428, 1794
Sau96I GGNCC 1 cut(s) 882
ScaI AGTACT 2 cut(s) 485, 1286
SchI GAGTC 2 cut(s) 857, 1964
ScrFI CCNGG 7 cut(s) 184, 258, 478, 707, 792, 1309, 1954
SduI GDGCHC 3 cut(s) 265, 965, 1462
SfaNI GCATC 4 cut(s) 711, 1030, 1543, 1870
SfcI CTRYAG 2 cut(s) 1146, 1232
SinI GGWCC 1 cut(s) 882
SmlI CTYRAG 1 cut(s) 1280
SmoI CTYRAG 1 cut(s) 1280
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 8 cut(s) 98, 192, 562, 952, 1296, 1712, 1762, 1887
SsiI CCGC 2 cut(s) 271, 276
SspMI CTAG 7 cut(s) 837, 852, 966, 1244, 1506, 1668, 1877
SstI GAGCTC 1 cut(s) 1462
StyD4I CCNGG 7 cut(s) 182, 256, 476, 705, 790, 1307, 1952
TaaI ACNGT 2 cut(s) 267, 1171
TaiI ACGT 3 cut(s) 504, 1666, 1741
TaqI TCGA 3 cut(s) 287, 1456, 1589
TasI AATT 8 cut(s) 98, 192, 562, 952, 1296, 1712, 1762, 1887
TatI WGTACW 4 cut(s) 483, 1284, 1819, 1933
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 6 cut(s) 50, 989, 1000, 1198, 1323, 1813
Tru1I TTAA 4 cut(s) 8, 330, 366, 1281
Tru9I TTAA 4 cut(s) 8, 330, 366, 1281
TscAI CASTG 3 cut(s) 120, 1200, 1533
TseFI GTSAC 2 cut(s) 490, 1856
TseI GCWGC 2 cut(s) 1427, 1793
Tsp45I GTSAC 2 cut(s) 490, 1856
TspDTI ATGAA 4 cut(s) 747, 927, 1002, 1277
TspGWI ACGGA 3 cut(s) 665, 812, 1716
TspRI CASTG 3 cut(s) 120, 1200, 1533
Vha464I CTTAAG 1 cut(s) 1280
VneI GTGCAC 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 882
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 2 cut(s) 562, 1762
XceI RCATGY 2 cut(s) 423, 1844
XmiI GTMKAC 1 cut(s) 1589
XspI CTAG 7 cut(s) 837, 852, 966, 1244, 1506, 1668, 1877
ZrmI AGTACT 2 cut(s) 485, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.