RchiOBHm_Chr5g0032151

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000071
Physical Location & Seq
Reverse (-)
25836442 .. 25841230
4789 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31135

Sequence Viewer

Length: 1341 bp
ATGGAGATTGTGTGGAGCTATTTTGAGGTTATGGATATTGTTAGCAGGTTGTTTGTCCCTATGTTTGACTATTTGAACAAAAATTGTGAGAAGGAACTTGAAGCTGTAAGGAGGCAGTATCCATTCGAACCAAGAAAGTACAATTGCTCACCCCGAGTGTGGTTTGGCAGATTCACTCAGTGCATGAGATGCTTTGGGTACAAGCAAAGCAATTCAGACCACACCTTGTTCCTAAAGCACCAAAAGGGAAAGGTAACTGTGCTTATTATATATGTGGATGATATGGTGATAACAGGGGATGACTTGGTAGAAATTGGAAGTCTTCAGAAGAAGTTGGCATCTGAGTTTGAGATGAAGAATCTGGGAGACTTGAAGTATTTCTTGGGGATTGAGGTAGCCAGGGGGAGAGACGACATCTTTTTATGTCAACGCAAGTATGTGTTGGACCTCTTGGCAGAGACAGGCATGTTGGATTGTTGCCCGATTGACACTCCAATCGAGCAAAATCACAAACTAGCAGAATATCCTGATCAGGTTCCAACTGACAAATCAAGATACCAGAGGTTAGTAGGACATCTGATTTATTTGTCACACACTAGACCTGATGTTGCTTATGCAGTTAGTGTTGTGACTCAGTTTATGCATAATCCAAGTGAACGGCATATGAAGGCAGTGGTAAGAATCTTGAGGTACTTAAAGTCAGCACCAGGAAAAGGTTTAATGTTTTTTAAATATCAGCACCTCAATGTTAGTAGATATACAGATGCAGATTGGGTCGGTTCTATCACAGACAGGAAGTCTACATCTGGGTACTTCACCTTGGTGGGAGGAAACCTTGTTTCTTGGAGAAGTAAGAAGCAAAAAGTTGTTGCAAGGTCAAGTGCTGAAGCTGAATATAGAGGTATGGCACATGGAGTGTGTGAACTTCTGTGGCTACGAAATTTACTTCGAGATTTGGGTTTTAAACCTAAGTCAGCAATGCAATTGTACTGTGATAACAAAGCAGCTATTGACATATCACATAATCCTGTGCAACATGACCGAACAAAACATGTGGAAGTTGATCGACACTTCATTAAGGAAAAGCTGGATGCAAAATTAATCTCCTTTCGTTTTGTTCCGACTGAGGAGCAATTAGCGAATATACTTACCAAAGCTGTATCTAGCAAGTTGTTCCATGACTCACAAGGCAAGTTGGGTCTTCGTGACGATGCCGGTGTCGAAGTTGATCCTATGGGGGACCTAAATACTGAAGCAGAGAGGAAGTTGGGCCAAATAGTTTTGGAGAAATACGAGCACGTACTGAGTTCTACATACTTGCCCGCTATTCGTTGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

446

Amino Acids

51.57

Weight (kDa)

8.74

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 50 - 167 4.9e-23 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AccI GTMKAC 1 cut(s) 800
AciI CCGC 1 cut(s) 1323
AclWI GGATC 1 cut(s) 1223
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 3 cut(s) 308, 906, 1272
AdeI CACNNNGTG 1 cut(s) 180
AfaI GTAC 6 cut(s) 140, 200, 692, 812, 989, 1302
AfiI CCNNNNNNNGG 2 cut(s) 159, 713
AflIII ACRYGT 1 cut(s) 1051
AgsI TTSAA 3 cut(s) 76, 101, 373
AhdI GACNNNNNGTC 1 cut(s) 796
AjnI CCWGG 2 cut(s) 398, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AleI CACNNNNGTG 1 cut(s) 821
AluBI AGCT 6 cut(s) 18, 104, 890, 1007, 1087, 1157
AluI AGCT 6 cut(s) 18, 104, 890, 1007, 1087, 1157
Alw21I GWGCWC 1 cut(s) 1299
Alw26I GTCTC 3 cut(s) 360, 402, 452
AlwI GGATC 1 cut(s) 1223
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 1270
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 1 cut(s) 940
AseI ATTAAT 1 cut(s) 1100
Asp700I GAANNNNTTC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 445, 1240, 1270
AsuHPI GGTGA 3 cut(s) 141, 298, 808
AsuII TTCGAA 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 2 cut(s) 445, 1240
BbsI GAAGAC 2 cut(s) 314, 1193
Bbv12I GWGCWC 1 cut(s) 1299
BbvI GCAGC 1 cut(s) 1016
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 2 cut(s) 400, 708
BciVI GTATCC 1 cut(s) 129
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 360, 402, 452
BfaI CTAG 3 cut(s) 515, 597, 1164
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 1 cut(s) 1005
BlsI GCNGC 1 cut(s) 1006
Bme1390I CCNGG 2 cut(s) 400, 708
Bme18I GGWCC 2 cut(s) 445, 1240
BmeRI GACNNNNNGTC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 445, 1240, 1270
BmiI GGNNCC 2 cut(s) 537, 1241
BmrFI CCNGG 2 cut(s) 400, 708
BmsI GCATC 5 cut(s) 179, 347, 754, 1081, 1201
BpiI GAAGAC 2 cut(s) 314, 1193
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 706
BsaAI YACGTR 1 cut(s) 1300
BsaJI CCNNGG 2 cut(s) 399, 819
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 713
Bse118I RCCGGY 1 cut(s) 1214
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 400, 708
BseDI CCNNGG 2 cut(s) 399, 819
BseGI GGATG 3 cut(s) 283, 304, 1096
BseLI CCNNNNNNNGG 2 cut(s) 159, 713
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 5 cut(s) 191, 333, 647, 1116, 1295
BseRI GAGGAG 1 cut(s) 1142
BseXI GCAGC 1 cut(s) 1016
BshFI GGCC 1 cut(s) 1272
BsiHKAI GWGCWC 1 cut(s) 1299
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 1215
BslFI GGGAC 2 cut(s) 41, 1253
BslI CCNNNNNNNGG 2 cut(s) 159, 713
BsmAI GTCTC 3 cut(s) 360, 402, 452
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 2 cut(s) 41, 1253
BsnI GGCC 1 cut(s) 1272
BsoBI CYCGRG 1 cut(s) 153
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 1299
Bsp143I GATC 3 cut(s) 529, 1063, 1228
BspACI CCGC 1 cut(s) 1323
BspANI GGCC 1 cut(s) 1272
BspCNI CTCAG 5 cut(s) 190, 334, 646, 1117, 1296
BspLI GGNNCC 2 cut(s) 537, 1241
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 1223
BspT104I TTCGAA 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 1214
BssAI RCCGGY 1 cut(s) 1214
BssECI CCNNGG 2 cut(s) 399, 819
BssMI GATC 3 cut(s) 529, 1063, 1228
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 400, 708
Bst4CI ACNGT 2 cut(s) 259, 992
BstAPI GCANNNNNTGC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 1300
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 1323
BstDEI CTNAG 6 cut(s) 177, 342, 633, 969, 1125, 1304
BstF5I GGATG 3 cut(s) 283, 304, 1096
BstKTI GATC 3 cut(s) 532, 1066, 1231
BstMAI GTCTC 3 cut(s) 360, 402, 452
BstMBI GATC 3 cut(s) 529, 1063, 1228
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 2 cut(s) 400, 708
BstNSI RCATGY 2 cut(s) 469, 1055
BstSCI CCNGG 2 cut(s) 398, 706
BstV1I GCAGC 1 cut(s) 1016
BstV2I GAAGAC 2 cut(s) 314, 1193
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 1272
BtsCI GGATG 3 cut(s) 283, 304, 1096
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 2 cut(s) 185, 678
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 1323
Cfr10I RCCGGY 1 cut(s) 1214
Cfr13I GGNCC 3 cut(s) 445, 1240, 1270
Csp6I GTAC 6 cut(s) 139, 199, 691, 811, 988, 1301
CspCI CAANNNNNGTGG 2 cut(s) 1035, 1070
CviAII CATG 6 cut(s) 184, 466, 911, 1037, 1052, 1178
CviQI GTAC 6 cut(s) 139, 199, 691, 811, 988, 1301
DdeI CTNAG 6 cut(s) 177, 342, 633, 969, 1125, 1304
DpnI GATC 3 cut(s) 531, 1065, 1230
DpnII GATC 3 cut(s) 529, 1063, 1228
DraI TTTAAA 2 cut(s) 730, 964
DraIII CACNNNGTG 1 cut(s) 180
DriI GACNNNNNGTC 1 cut(s) 796
Eam1105I GACNNNNNGTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 819
Eco47I GGWCC 2 cut(s) 445, 1240
Eco57I CTGAAG 3 cut(s) 308, 906, 1272
Eco88I CYCGRG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 1240
EcoRII CCWGG 2 cut(s) 398, 706
EcoT14I CCWWGG 1 cut(s) 819
EcoT22I ATGCAT 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 6 cut(s) 187, 469, 914, 1040, 1055, 1181
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 2 cut(s) 41, 1253
FatI CATG 6 cut(s) 183, 465, 910, 1036, 1051, 1177
FauI CCCGC 1 cut(s) 1330
FauNDI CATATG 1 cut(s) 663
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 1 cut(s) 1005
FokI GGATG 3 cut(s) 290, 311, 1103
Fsp4HI GCNGC 1 cut(s) 1005
FspBI CTAG 3 cut(s) 515, 597, 1164
GluI GCNGC 1 cut(s) 1005
HaeIII GGCC 1 cut(s) 1272
HapII CCGG 1 cut(s) 1215
Hin1II CATG 6 cut(s) 187, 469, 914, 1040, 1055, 1181
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HinfI GANTC 5 cut(s) 171, 358, 631, 681, 1181
HpaII CCGG 1 cut(s) 1215
HphI GGTGA 3 cut(s) 141, 298, 808
Hpy166II GTNNAC 4 cut(s) 428, 656, 801, 923
Hpy188I TCNGA 5 cut(s) 217, 327, 343, 579, 1122
Hpy188III TCNNGA 5 cut(s) 527, 552, 685, 950, 1205
Hpy8I GTNNAC 4 cut(s) 428, 656, 801, 923
HpyAV CCTTC 2 cut(s) 85, 661
HpyCH4III ACNGT 2 cut(s) 259, 992
HpyCH4IV ACGT 1 cut(s) 1299
HpyCH4V TGCA 8 cut(s) 183, 617, 643, 767, 872, 982, 1033, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 6 cut(s) 177, 342, 633, 969, 1125, 1304
HpySE526I ACGT 1 cut(s) 1299
Hsp92II CATG 6 cut(s) 187, 469, 914, 1040, 1055, 1181
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 529, 1063, 1228
LmnI GCTCC 2 cut(s) 15, 1129
Lsp1109I GCAGC 1 cut(s) 1016
LweI GCATC 5 cut(s) 179, 347, 754, 1081, 1201
MaeI CTAG 3 cut(s) 515, 597, 1164
MaeII ACGT 1 cut(s) 1299
MaeIII GTNAC 4 cut(s) 253, 588, 628, 1205
MalI GATC 3 cut(s) 531, 1065, 1230
MboI GATC 3 cut(s) 529, 1063, 1228
MboII GAAGA 4 cut(s) 314, 340, 367, 1193
MfeI CAATTG 2 cut(s) 142, 983
MhlI GDGCHC 1 cut(s) 1299
MluCI AATT 8 cut(s) 82, 142, 211, 312, 940, 983, 1097, 1133
MlyI GAGTC 2 cut(s) 625, 1175
MmeI TCCRAC 4 cut(s) 423, 450, 563, 1145
Mph1103I ATGCAT 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 6 cut(s) 695, 719, 729, 963, 1077, 1100
MslI CAYNNNNRTG 2 cut(s) 744, 821
MspI CCGG 1 cut(s) 1215
MspR9I CCNGG 2 cut(s) 400, 708
MunI CAATTG 2 cut(s) 142, 983
MvaI CCWGG 2 cut(s) 400, 708
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeI CATATG 1 cut(s) 663
NdeII GATC 3 cut(s) 529, 1063, 1228
NlaIII CATG 6 cut(s) 187, 469, 914, 1040, 1055, 1181
NlaIV GGNNCC 2 cut(s) 537, 1241
NmuCI GTSAC 3 cut(s) 588, 628, 1205
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 2 cut(s) 469, 1055
NspV TTCGAA 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 821
PciI ACATGT 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 3 cut(s) 171, 358, 681
PkrI GCNGC 1 cut(s) 1006
PleI GAGTC 2 cut(s) 625, 1175
PpsI GAGTC 2 cut(s) 625, 1175
Ppu21I YACGTR 1 cut(s) 1300
PpuMI RGGWCCY 1 cut(s) 1240
PscI ACATGT 1 cut(s) 1051
PshBI ATTAAT 1 cut(s) 1100
Psp5II RGGWCCY 1 cut(s) 1240
Psp6I CCWGG 2 cut(s) 398, 706
PspGI CCWGG 2 cut(s) 398, 706
PspN4I GGNNCC 2 cut(s) 537, 1241
PspPI GGNCC 3 cut(s) 445, 1240, 1270
PspPPI RGGWCCY 1 cut(s) 1240
RsaI GTAC 6 cut(s) 140, 200, 692, 812, 989, 1302
RsaNI GTAC 6 cut(s) 139, 199, 691, 811, 988, 1301
RseI CAYNNNNRTG 2 cut(s) 744, 821
SaqAI TTAA 6 cut(s) 695, 719, 729, 963, 1077, 1100
SatI GCNGC 1 cut(s) 1005
Sau3AI GATC 3 cut(s) 529, 1063, 1228
Sau96I GGNCC 3 cut(s) 445, 1240, 1270
SchI GAGTC 2 cut(s) 625, 1175
ScrFI CCNGG 2 cut(s) 400, 708
SduI GDGCHC 1 cut(s) 1299
SfaNI GCATC 5 cut(s) 179, 347, 754, 1081, 1201
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 2 cut(s) 445, 1240
SmiMI CAYNNNNRTG 2 cut(s) 744, 821
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 8 cut(s) 82, 142, 211, 312, 940, 983, 1097, 1133
SsiI CCGC 1 cut(s) 1323
SspMI CTAG 3 cut(s) 515, 597, 1164
StyD4I CCNGG 2 cut(s) 398, 706
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 2 cut(s) 259, 992
TaiI ACGT 1 cut(s) 1302
TaqI TCGA 5 cut(s) 126, 498, 949, 1066, 1221
TaqII GACCGA 1 cut(s) 1056
TasI AATT 8 cut(s) 82, 142, 211, 312, 940, 983, 1097, 1133
TatI WGTACW 2 cut(s) 138, 987
TfiI GAWTC 3 cut(s) 171, 358, 681
Tru1I TTAA 6 cut(s) 695, 719, 729, 963, 1077, 1100
Tru9I TTAA 6 cut(s) 695, 719, 729, 963, 1077, 1100
TscAI CASTG 2 cut(s) 185, 678
TseFI GTSAC 3 cut(s) 588, 628, 1205
TseI GCWGC 1 cut(s) 1004
Tsp45I GTSAC 3 cut(s) 588, 628, 1205
TspDTI ATGAA 3 cut(s) 368, 680, 1063
TspRI CASTG 2 cut(s) 185, 678
VpaK11BI GGWCC 2 cut(s) 445, 1240
VspI ATTAAT 1 cut(s) 1100
XapI RAATTY 1 cut(s) 940
XceI RCATGY 2 cut(s) 469, 1055
XmiI GTMKAC 1 cut(s) 800
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 3 cut(s) 515, 597, 1164
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.