FvH4_7g12551

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000071
Physical Location & Seq
Reverse (-)
11366621 .. 11367445
825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12551.t1

Sequence Viewer

Length: 747 bp
ATGTGCCAGCGCAAGTATGCTTTAGAGATTATCAAAGATTCAGGGCTGTTAGGCACGACCCCAGTTGATACTCCAATGGAGAGAGGTTTAAAATATTCAGACAAGAGTGACTTACTCAGAGATCCAGGCCGTTATAGAAGATTAGTGGGTCATTTAATATATCTTACTGTGTCAAGGCCAGATATTACCTATGTTGTCCATGTCTTGAGTAGGTTCATGCATCAACCTCGGATGCATCATATGGAGGTAGCTCTTCGTGTTATTCGGTATTTGAAAGGCTGTCCACTCACTAGAAGATCTATTACTAGTTATTGTGTTTTTCTCGGACTTTCATTGATATCTTGGAAATCAAAACGGCAGAAAACAATGTCTTTTTCCTCAGCTGAAGCTAAATATCGTGCAATGACTGGAGCTTGTTGTGAGTTAACATGGCTACGGTATCTATTGAGAGACTTAGGACTTGTTCACCATGAACCTACCTCATTGTGTTGTGACAATAAGGCTGCTTTGCACATAGCAGCCAATCCAGTTTTTCATGAGCGGACTCGACATATTGAGATGGACTGCCATTATATTAGAGACAAGATTCAAGATGGTTCTGTAGTTACAAAACATGTCAGCTCTGCGCACCAATTGGCCGACGTCATGACTAAACCCTTAGGAAAAGAAACTTTTGTTCCTATGGTTCACAAGTTAGGGAGTGCAAGACATTCACTCTCCAACTTGAGGGGGAGTGTTGGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

249

Amino Acids

28.31

Weight (kDa)

9.73

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 645
Acc16I TGCGCA 1 cut(s) 627
AccBSI CCGCTC 1 cut(s) 541
AciI CCGC 1 cut(s) 541
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 636
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 642
AfiI CCNNNNNNNGG 1 cut(s) 726
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 2 cut(s) 274, 590
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 5 cut(s) 251, 383, 389, 413, 621
AluI AGCT 5 cut(s) 251, 383, 389, 413, 621
Alw26I GTCTC 2 cut(s) 444, 573
AlwI GGATC 1 cut(s) 116
AoxI GGCC 3 cut(s) 127, 176, 636
ApeKI GCWGC 2 cut(s) 503, 518
AspLEI GCGC 2 cut(s) 12, 628
AsuHPI GGTGA 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 658
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BbvCI CCTCAGC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 490, 530
BccI CCATC 2 cut(s) 553, 587
BceAI ACGGC 2 cut(s) 114, 371
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 444, 573
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 2 cut(s) 291, 306
BfmI CTRYAG 1 cut(s) 600
BglII AGATCT 1 cut(s) 296
BisI GCNGC 2 cut(s) 504, 519
BlsI GCNGC 2 cut(s) 505, 520
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 222, 229, 244
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 379
BpuEI CTTGAG 2 cut(s) 226, 745
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 726
Bse1I ACTGG 3 cut(s) 62, 412, 527
Bse21I CCTNAGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 726
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 130, 393
BseNI ACTGG 3 cut(s) 62, 412, 527
BseXI GCAGC 2 cut(s) 490, 530
BshFI GGCC 3 cut(s) 129, 178, 638
BslI CCNNNNNNNGG 1 cut(s) 726
BsmAI GTCTC 2 cut(s) 444, 573
BsnI GGCC 3 cut(s) 129, 178, 638
Bsp143I GATC 2 cut(s) 121, 296
BspACI CCGC 1 cut(s) 541
BspANI GGCC 3 cut(s) 129, 178, 638
BspCNI CTCAG 2 cut(s) 129, 392
BspHI TCATGA 2 cut(s) 535, 645
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 3 cut(s) 62, 412, 527
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 2 cut(s) 121, 296
BssNI GRCGYC 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 169, 438
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 4 cut(s) 116, 379, 454, 658
BstF5I GGATG 1 cut(s) 237
BstHHI GCGC 2 cut(s) 12, 628
BstKTI GATC 2 cut(s) 124, 299
BstMAI GTCTC 2 cut(s) 444, 573
BstMBI GATC 2 cut(s) 121, 296
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 490, 530
BstX2I RGATCY 2 cut(s) 121, 296
BstYI RGATCY 2 cut(s) 121, 296
Bsu36I CCTNAGG 1 cut(s) 658
BsuRI GGCC 3 cut(s) 129, 178, 638
BtsCI GGATG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 2 cut(s) 535, 645
CfoI GCGC 2 cut(s) 12, 628
CviAII CATG 7 cut(s) 200, 217, 429, 470, 536, 614, 646
DdeI CTNAG 4 cut(s) 116, 379, 454, 658
DpnI GATC 2 cut(s) 123, 298
DpnII GATC 2 cut(s) 121, 296
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 124
EcoRV GATATC 1 cut(s) 339
EcoT22I ATGCAT 2 cut(s) 222, 237
FaeI CATG 7 cut(s) 203, 220, 432, 473, 539, 617, 649
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 7 cut(s) 199, 216, 428, 469, 535, 613, 645
FauNDI CATATG 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 504, 519
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 504, 519
FspBI CTAG 2 cut(s) 291, 306
FspI TGCGCA 1 cut(s) 627
GlaI GCGC 2 cut(s) 11, 627
GluI GCNGC 2 cut(s) 504, 519
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 3 cut(s) 129, 178, 638
HhaI GCGC 2 cut(s) 12, 628
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 7 cut(s) 203, 220, 432, 473, 539, 617, 649
Hin6I GCGC 2 cut(s) 10, 626
HinP1I GCGC 2 cut(s) 10, 626
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 3 cut(s) 38, 544, 586
HpaI GTTAAC 1 cut(s) 426
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 4 cut(s) 284, 426, 466, 688
Hpy188I TCNGA 4 cut(s) 100, 119, 231, 326
Hpy188III TCNNGA 4 cut(s) 205, 536, 590, 646
Hpy8I GTNNAC 4 cut(s) 284, 426, 466, 688
Hpy99I CGWCG 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 169, 438
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 5 cut(s) 220, 235, 401, 511, 704
HpyF3I CTNAG 4 cut(s) 116, 379, 454, 658
HpySE526I ACGT 1 cut(s) 642
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 7 cut(s) 203, 220, 432, 473, 539, 617, 649
HspAI GCGC 2 cut(s) 10, 626
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 2 cut(s) 121, 296
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 8 cut(s) 20, 27, 75, 111, 138, 192, 393, 540
Lsp1109I GCAGC 2 cut(s) 490, 530
LweI GCATC 3 cut(s) 222, 229, 244
MaeI CTAG 2 cut(s) 291, 306
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 3 cut(s) 107, 491, 604
MalI GATC 2 cut(s) 123, 298
MbiI CCGCTC 1 cut(s) 541
MboI GATC 2 cut(s) 121, 296
MboII GAAGA 3 cut(s) 150, 245, 306
MfeI CAATTG 1 cut(s) 632
MflI RGATCY 2 cut(s) 121, 296
MluCI AATT 1 cut(s) 632
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 2 cut(s) 718, 744
MnlI CCTC 6 cut(s) 77, 237, 238, 388, 490, 720
Mph1103I ATGCAT 2 cut(s) 222, 237
MseI TTAA 3 cut(s) 89, 155, 425
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 240
NdeII GATC 2 cut(s) 121, 296
NlaIII CATG 7 cut(s) 203, 220, 432, 473, 539, 617, 649
NmuCI GTSAC 2 cut(s) 107, 491
NsbI TGCGCA 1 cut(s) 627
NsiI ATGCAT 2 cut(s) 222, 237
NspI RCATGY 1 cut(s) 617
PagI TCATGA 2 cut(s) 535, 645
PciI ACATGT 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 38, 586
PkrI GCNGC 2 cut(s) 505, 520
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PscI ACATGT 1 cut(s) 613
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 121, 296
PvuII CAGCTG 1 cut(s) 383
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 3 cut(s) 89, 155, 425
SatI GCNGC 2 cut(s) 504, 519
Sau3AI GATC 2 cut(s) 121, 296
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 126
SfaNI GCATC 3 cut(s) 222, 229, 244
SfcI CTRYAG 1 cut(s) 600
SmlI CTYRAG 2 cut(s) 205, 724
SmoI CTYRAG 2 cut(s) 205, 724
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 1 cut(s) 632
SsiI CCGC 1 cut(s) 541
SspI AATATT 1 cut(s) 95
SspMI CTAG 2 cut(s) 291, 306
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 169, 438
TaiI ACGT 1 cut(s) 645
TaqI TCGA 1 cut(s) 547
TasI AATT 1 cut(s) 632
TfiI GAWTC 2 cut(s) 38, 586
Tru1I TTAA 3 cut(s) 89, 155, 425
Tru9I TTAA 3 cut(s) 89, 155, 425
TseFI GTSAC 2 cut(s) 107, 491
TseI GCWGC 2 cut(s) 503, 518
Tsp45I GTSAC 2 cut(s) 107, 491
TspDTI ATGAA 4 cut(s) 205, 321, 486, 524
XceI RCATGY 1 cut(s) 617
XspI CTAG 2 cut(s) 291, 306
ZraI GACGTC 1 cut(s) 643
Zsp2I ATGCAT 2 cut(s) 222, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.